Comparison of the performance of an amplicon sequencing assay based on Oxford Nanopore technology to real-time PCR assays for detecting bacterial biodefense pathogens
Player, Robert, Verratti, Kathleen, Staab, Andrea, Bradburne, Christopher, Grady, Sarah, Goodwin, Bruce, Sozhamannan, Shanmuga
Published in BMC genomics (17.02.2020)
Published in BMC genomics (17.02.2020)
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Journal Article
Genetic evidence for the interaction between Bacillus anthracis-encoded phage receptors and their cognate phage-encoded receptor binding proteins
Forrest, Samantha, Ton, Sarah, Sholes, Samantha L., Harrison, Sarah, Plaut, Roger D., Verratti, Kathleen, Wittekind, Michael, Ettehadieh, Elham, Necciai, Bryan, Sozhamannan, Shanmuga, Grady, Sarah L.
Published in Frontiers in microbiology (31.10.2023)
Published in Frontiers in microbiology (31.10.2023)
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Journal Article
Novel High-Molecular-Weight, R-Type Bacteriocins of Clostridium difficile
Gebhart, Dana, Williams, Steven R, Bishop-Lilly, Kimberly A, Govoni, Gregory R, Willner, Kristin M, Butani, Amy, Sozhamannan, Shanmuga, Martin, David, Fortier, Louis-Charles, Scholl, Dean
Published in Journal of Bacteriology (01.11.2012)
Published in Journal of Bacteriology (01.11.2012)
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Journal Article
Impact of template denaturation prior to whole genome amplification on gene detection in high GC-content species, Burkholderia mallei and B. pseudomallei
Taitt, Chris R, Leski, Tomasz A, Compton, Jaimee R, Chen, Amy, Berk, Kimberly L, Dorsey, Robert W, Sozhamannan, Shanmuga, Dutt, Dianne L, Vora, Gary J
Published in BMC research notes (12.03.2024)
Published in BMC research notes (12.03.2024)
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Journal Article
Beyond the chromosome: the prevalence of unique extra-chromosomal bacteriophages with integrated virulence genes in pathogenic Staphylococcus aureus
Utter, Bryan, Deutsch, Douglas R, Schuch, Raymond, Winer, Benjamin Y, Verratti, Kathleen, Bishop-Lilly, Kim, Sozhamannan, Shanmuga, Fischetti, Vincent A
Published in PloS one (25.06.2014)
Published in PloS one (25.06.2014)
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Journal Article
Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome
Bruhn, Matthias, Schindler, Daniel, Kemter, Franziska S, Wiley, Michael R, Chase, Kitty, Koroleva, Galina I, Palacios, Gustavo, Sozhamannan, Shanmuga, Waldminghaus, Torsten
Published in Frontiers in microbiology (30.11.2018)
Published in Frontiers in microbiology (30.11.2018)
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Journal Article
A Survey of Antimicrobial Resistance Determinants in Category A Select Agents, Exempt Strains, and Near-Neighbor Species
Taitt, Chris R, Leski, Tomasz A, Chen, Amy, Berk, Kimberly L, Dorsey, Robert W, Gregory, Michael J, Sozhamannan, Shanmuga, Frey, Kenneth G, Dutt, Diane L, Vora, Gary J
Published in International journal of molecular sciences (29.02.2020)
Published in International journal of molecular sciences (29.02.2020)
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Journal Article
Wastewater Surveillance Pilot at US Military Installations: Cost Model Analysis
Sanjak, Jaleal S, McAuley, Erin M, Raybern, Justin, Pinkham, Richard, Tarnowski, Jacob, Miko, Nicole, Rasmussen, Bridgette, Manalo, Christian J, Goodson, Michael, Stamps, Blake, Necciai, Bryan, Sozhamannan, Shanmuga, Maier, Ezekiel J
Published in JMIR public health and surveillance (06.09.2024)
Published in JMIR public health and surveillance (06.09.2024)
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Journal Article
Standards for sequencing viral genomes in the era of high-throughput sequencing
Ladner, Jason T, Beitzel, Brett, Chain, Patrick S G, Davenport, Matthew G, Donaldson, Eric F, Frieman, Matthew, Kugelman, Jeffrey R, Kuhn, Jens H, O'Rear, Jules, Sabeti, Pardis C, Wentworth, David E, Wiley, Michael R, Yu, Guo-Yun, Sozhamannan, Shanmuga, Bradburne, Christopher, Palacios, Gustavo
Published in mBio (17.06.2014)
Published in mBio (17.06.2014)
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Journal Article
Development, testing and validation of a SARS-CoV-2 multiplex panel for detection of the five major variants of concern on a portable PCR platform
Stanhope, Bryce J, Peterson, Brittany, Knight, Brittany, Decadiz, Ray Nobles, Pan, Roger, Davis, Phillip, Fraser, Anne, Nuth, Manunya, vanWestrienen, Jesse, Wendlandt, Erik, Goodwin, Bruce, Myers, Christopher, Stone, Jennifer, Sozhamannan, Shanmuga
Published in Frontiers in public health (15.12.2022)
Published in Frontiers in public health (15.12.2022)
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Journal Article
Genomic characterization of the Yersinia genus
Chen, Peter E, Cook, Christopher, Stewart, Andrew C, Nagarajan, Niranjan, Sommer, Dan D, Pop, Mihai, Thomason, Brendan, Thomason, Maureen P Kiley, Lentz, Shannon, Nolan, Nichole, Sozhamannan, Shanmuga, Sulakvelidze, Alexander, Mateczun, Alfred, Du, Lei, Zwick, Michael E, Read, Timothy D
Published in Genome biology (04.01.2010)
Published in Genome biology (04.01.2010)
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Journal Article
Impact of SARS-CoV-2 Mutations on PCR Assay Sequence Alignment
Negrón, Daniel Antonio, Kang, June, Mitchell, Shane, Holland, Mitchell Y, Wist, Stephen, Voss, Jameson, Brinkac, Lauren, Jennings, Katharine, Guertin, Stephanie, Goodwin, Bruce G, Sozhamannan, Shanmuga
Published in Frontiers in public health (28.04.2022)
Published in Frontiers in public health (28.04.2022)
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Journal Article
Genetic Evidence for the Involvement of the S-Layer Protein Gene sap and the Sporulation Genes spo0A, spo0B, and spo0F in Phage AP50c Infection of Bacillus anthracis
Plaut, Roger D, Beaber, John W, Zemansky, Jason, Kaur, Ajinder P, George, Matroner, Biswas, Biswajit, Henry, Matthew, Bishop-Lilly, Kimberly A, Mokashi, Vishwesh, Hannah, Ryan M, Pope, Robert K, Read, Timothy D, Stibitz, Scott, Calendar, Richard, Sozhamannan, Shanmuga
Published in Journal of Bacteriology (01.03.2014)
Published in Journal of Bacteriology (01.03.2014)
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Journal Article
Avirulent Bacillus anthracis Strain with Molecular Assay Targets as Surrogate for Irradiation-Inactivated Virulent Spores
Plaut, Roger D, Staab, Andrea B, Munson, Mark A, Gebhardt, Joan S, Klimko, Christopher P, Quirk, Avery V, Cote, Christopher K, Buhr, Tony L, Rossmaier, Rebecca D, Bernhards, Robert C, Love, Courtney E, Berk, Kimberly L, Abshire, Teresa G, Rozak, David A, Beck, Linda C, Stibitz, Scott, Goodwin, Bruce G, Smith, Michael A, Sozhamannan, Shanmuga
Published in Emerging infectious diseases (01.04.2018)
Published in Emerging infectious diseases (01.04.2018)
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Journal Article
Scanning the landscape of genome architecture of non-O1 and non-O139 Vibrio cholerae by whole genome mapping reveals extensive population genetic diversity
Chapman, Carol, Henry, Matthew, Bishop-Lilly, Kimberly A, Awosika, Joy, Briska, Adam, Ptashkin, Ryan N, Wagner, Trevor, Rajanna, Chythanya, Tsang, Hsinyi, Johnson, Shannon L, Mokashi, Vishwesh P, Chain, Patrick S G, Sozhamannan, Shanmuga
Published in PloS one (20.03.2015)
Published in PloS one (20.03.2015)
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Journal Article
Halo-A Universal Fluorescence Reader Based Threat Agent Detection Platform-A Proof of Concept Study Using SARS-CoV-2 Assays
Walish, Joseph, Cox, Jason, Boone, Jeremy, Stone, Jennifer, Henderson, Nathan, Maloney, Molly, Ma, Joe, Maa, Jonathan, On, Nghiem, Petre, Konrad, Goodwin, Bruce G, Sozhamannan, Shanmuga, Deans, Robert
Published in Frontiers in public health (12.04.2022)
Published in Frontiers in public health (12.04.2022)
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Journal Article
Reorganized Genomic Taxonomy of Francisellaceae Enables Design of Robust Environmental PCR Assays for Detection of Francisella tularensis
Öhrman, Caroline, Sahl, Jason W, Sjödin, Andreas, Uneklint, Ingrid, Ballard, Rebecca, Karlsson, Linda, McDonough, Ryelan F, Sundell, David, Soria, Kathleen, Bäckman, Stina, Chase, Kitty, Brindefalk, Björn, Sozhamannan, Shanmuga, Vallesi, Adriana, Hägglund, Emil, Ramirez-Paredes, Jose Gustavo, Thelaus, Johanna, Colquhoun, Duncan, Myrtennäs, Kerstin, Birdsell, Dawn, Johansson, Anders, Wagner, David M, Forsman, Mats
Published in Microorganisms (Basel) (01.01.2021)
Published in Microorganisms (Basel) (01.01.2021)
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Journal Article
Blind Spot: A Braille Patterned Novel Multiplex Lateral Flow Immunoassay Sensor Array for the Detection of Biothreat Agents
Hofmann, E. Randal, Davidson, Charles, Chen, Hsiu, Zacharko, Melody, Dorton, Jay E, Kilper, Gary K, Graves, Carcie, Miklos, Aleksandr E, Rhea, Katherine, Ma, Joe, Goodwin, Bruce G, Sozhamannan, Shanmuga
Published in ACS omega (07.09.2021)
Published in ACS omega (07.09.2021)
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