Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing
Wilson, Michael R, Naccache, Samia N, Samayoa, Erik, Biagtan, Mark, Bashir, Hiba, Yu, Guixia, Salamat, Shahriar M, Somasekar, Sneha, Federman, Scot, Miller, Steve, Sokolic, Robert, Garabedian, Elizabeth, Candotti, Fabio, Buckley, Rebecca H, Reed, Kurt D, Meyer, Teresa L, Seroogy, Christine M, Galloway, Renee, Henderson, Sheryl L, Gern, James E, DeRisi, Joseph L, Chiu, Charles Y
Published in The New England journal of medicine (19.06.2014)
Published in The New England journal of medicine (19.06.2014)
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Human ACE2 receptor polymorphisms and altered susceptibility to SARS-CoV-2
Suryamohan, Kushal, Diwanji, Devan, Stawiski, Eric W., Gupta, Ravi, Miersch, Shane, Liu, Jiang, Chen, Chao, Jiang, Ying-Ping, Fellouse, Frederic A., Sathirapongsasuti, J. Fah, Albers, Patrick K., Deepak, Tanneeru, Saberianfar, Reza, Ratan, Aakrosh, Washburn, Gavin, Mis, Monika, Santhosh, Devi, Somasekar, Sneha, Hiranjith, G. H., Vargas, Derek, Mohan, Sangeetha, Phalke, Sameer, Kuriakose, Boney, Antony, Aju, Ustav Jr, Mart, Schuster, Stephan C., Sidhu, Sachdev, Junutula, Jagath R., Jura, Natalia, Seshagiri, Somasekar
Published in Communications biology (12.04.2021)
Published in Communications biology (12.04.2021)
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Nanopore DNA Sequencing and Genome Assembly on the International Space Station
Castro-Wallace, Sarah L., Chiu, Charles Y., John, Kristen K., Stahl, Sarah E., Rubins, Kathleen H., McIntyre, Alexa B. R., Dworkin, Jason P., Lupisella, Mark L., Smith, David J., Botkin, Douglas J., Stephenson, Timothy A., Juul, Sissel, Turner, Daniel J., Izquierdo, Fernando, Federman, Scot, Stryke, Doug, Somasekar, Sneha, Alexander, Noah, Yu, Guixia, Mason, Christopher E., Burton, Aaron S.
Published in Scientific reports (21.12.2017)
Published in Scientific reports (21.12.2017)
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A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012–14): a retrospective cohort study
Greninger, Alexander L, MD, Naccache, Samia N, PhD, Messacar, Kevin, MD, Clayton, Anna, BSc, Yu, Guixia, BSc, Somasekar, Sneha, BSc, Federman, Scot, BA, Stryke, Doug, BSc, Anderson, Christopher, BSc, Yagi, Shigeo, PhD, Messenger, Sharon, PhD, Wadford, Debra, PhD, Xia, Dongxiang, MD, Watt, James P, MD, Van Haren, Keith, MD, Dominguez, Samuel R, MD, Glaser, Carol, MD, Aldrovandi, Grace, Prof, Chiu, Charles Y, Dr
Published in The Lancet infectious diseases (01.06.2015)
Published in The Lancet infectious diseases (01.06.2015)
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Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing
Sardi, Silvia I, Somasekar, Sneha, Naccache, Samia N, Bandeira, Antonio C, Tauro, Laura B, Campos, Gubio S, Chiu, Charles Y
Published in Journal of clinical microbiology (01.09.2016)
Published in Journal of clinical microbiology (01.09.2016)
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Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
Greninger, Alexander L, Naccache, Samia N, Federman, Scot, Yu, Guixia, Mbala, Placide, Bres, Vanessa, Stryke, Doug, Bouquet, Jerome, Somasekar, Sneha, Linnen, Jeffrey M, Dodd, Roger, Mulembakani, Prime, Schneider, Bradley S, Muyembe-Tamfum, Jean-Jacques, Stramer, Susan L, Chiu, Charles Y
Published in Genome medicine (29.09.2015)
Published in Genome medicine (29.09.2015)
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Experimental Zika Virus Inoculation in a New World Monkey Model Reproduces Key Features of the Human Infection
Chiu, Charles Y., Sánchez-San Martín, Claudia, Bouquet, Jerome, Li, Tony, Yagi, Shigeo, Tamhankar, Manasi, Hodara, Vida L., Parodi, Laura M., Somasekar, Sneha, Yu, Guixia, Giavedoni, Luis D., Tardif, Suzette, Patterson, Jean
Published in Scientific reports (07.12.2017)
Published in Scientific reports (07.12.2017)
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Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016
Chiu, Charles Y, Coffey, Lark L, Murkey, Jamie, Symmes, Kelly, Sample, Hannah A, Wilson, Michael R, Naccache, Samia N, Arevalo, Shaun, Somasekar, Sneha, Federman, Scot, Stryke, Doug, Vespa, Paul, Schiller, Gary, Messenger, Sharon, Humphries, Romney, Miller, Steve, Klausner, Jeffrey D
Published in Emerging infectious diseases (01.10.2017)
Published in Emerging infectious diseases (01.10.2017)
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Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico
Thézé, Julien, Li, Tony, du Plessis, Louis, Bouquet, Jerome, Kraemer, Moritz U.G., Somasekar, Sneha, Yu, Guixia, de Cesare, Mariateresa, Balmaseda, Angel, Kuan, Guillermina, Harris, Eva, Wu, Chieh-hsi, Ansari, M. Azim, Bowden, Rory, Faria, Nuno R., Yagi, Shigeo, Messenger, Sharon, Brooks, Trevor, Stone, Mars, Bloch, Evan M., Busch, Michael, Muñoz-Medina, José E., González-Bonilla, Cesar R., Wolinsky, Steven, López, Susana, Arias, Carlos F., Bonsall, David, Chiu, Charles Y., Pybus, Oliver G.
Published in Cell host & microbe (13.06.2018)
Published in Cell host & microbe (13.06.2018)
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Distinct Zika Virus Lineage in Salvador, Bahia, Brazil
Naccache, Samia N, Thézé, Julien, Sardi, Silvia I, Somasekar, Sneha, Greninger, Alexander L, Bandeira, Antonio C, Campos, Gubio S, Tauro, Laura B, Faria, Nuno R, Pybus, Oliver G, Chiu, Charles Y
Published in Emerging infectious diseases (01.10.2016)
Published in Emerging infectious diseases (01.10.2016)
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No viral association found in a set of differentiated vulvar intraepithelial neoplasia cases by human papillomavirus and pan-viral microarray testing
Saglam, Ozlen, Samayoa, Erik, Somasekar, Sneha, Naccache, Samia, Iwasaki, Akiko, Chiu, Charles Y
Published in PloS one (20.04.2015)
Published in PloS one (20.04.2015)
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Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance
Deng, Xianding, Achari, Asmeeta, Federman, Scot, Yu, Guixia, Somasekar, Sneha, Bártolo, Inês, Yagi, Shigeo, Mbala-Kingebeni, Placide, Kapetshi, Jimmy, Ahuka-Mundeke, Steve, Muyembe-Tamfum, Jean-Jacques, Ahmed, Asim A., Ganesh, Vijay, Tamhankar, Manasi, Patterson, Jean L., Ndembi, Nicaise, Mbanya, Dora, Kaptue, Lazare, McArthur, Carole, Muñoz-Medina, José E., Gonzalez-Bonilla, Cesar R., López, Susana, Arias, Carlos F., Arevalo, Shaun, Miller, Steve, Stone, Mars, Busch, Michael, Hsieh, Kristina, Messenger, Sharon, Wadford, Debra A., Rodgers, Mary, Cloherty, Gavin, Faria, Nuno R., Thézé, Julien, Pybus, Oliver G., Neto, Zoraima, Morais, Joana, Taveira, Nuno, Hackett, John R., Chiu, Charles Y.
Published in Nature microbiology (01.03.2020)
Published in Nature microbiology (01.03.2020)
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Viral Surveillance in Serum Samples From Patients With Acute Liver Failure By Metagenomic Next-Generation Sequencing
Somasekar, Sneha, Lee, Deanna, Rule, Jody, Naccache, Samia N., Stone, Mars, Busch, Michael P., Sanders, Corron, Lee, William M., Chiu, Charles Y.
Published in Clinical infectious diseases (01.11.2017)
Published in Clinical infectious diseases (01.11.2017)
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Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo
Li, Tony, Mbala-Kingebeni, Placide, Naccache, Samia N, Thézé, Julien, Bouquet, Jerome, Federman, Scot, Somasekar, Sneha, Yu, Guixia, Sanchez-San Martin, Claudia, Achari, Asmeeta, Schneider, Bradley S, Rimoin, Anne W, Rambaut, Andrew, Nsio, Justus, Mulembakani, Prime, Ahuka-Mundeke, Steve, Kapetshi, Jimmy, Pybus, Oliver G, Muyembe-Tamfum, Jean-Jacques, Chiu, Charles Y
Published in Journal of clinical microbiology (01.09.2019)
Published in Journal of clinical microbiology (01.09.2019)
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Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance
Deng, Xianding, Achari, Asmeeta, Federman, Scot, Yu, Guixia, Somasekar, Sneha, Bártolo, Inês, Yagi, Shigeo, Mbala-Kingebeni, Placide, Kapetshi, Jimmy, Ahuka-Mundeke, Steve, Muyembe-Tamfum, Jean-Jacques, Ahmed, Asim A., Ganesh, Vijay, Tamhankar, Manasi, Patterson, Jean L., Ndembi, Nicaise, Mbanya, Dora, Kaptue, Lazare, McArthur, Carole, Muñoz-Medina, José E., Gonzalez-Bonilla, Cesar R., López, Susana, Arias, Carlos F., Arevalo, Shaun, Miller, Steve, Stone, Mars, Busch, Michael, Hsieh, Kristina, Messenger, Sharon, Wadford, Debra A., Rodgers, Mary, Cloherty, Gavin, Faria, Nuno R., Thézé, Julien, Pybus, Oliver G., Neto, Zoraima, Morais, Joana, Taveira, Nuno, R. Hackett, John, Chiu, Charles Y.
Published in Nature microbiology (01.03.2020)
Published in Nature microbiology (01.03.2020)
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A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the United States from 2012-2014: a retrospective cohort study
Greninger, Alexander L., Naccache, Samia N., Messacar, Kevin, Clayton, Anna, Yu, Guixia, Somasekar, Sneha, Federman, Scot, Stryke, Doug, Anderson, Christopher, Yagi, Shigeo, Messenger, Sharon, Wadford, Debra, Xia, Dongxiang, Watt, James P., Haren, Keith Van, Dominguez, Samuel R., Glaser, Carol, Aldrovandi, Grace, Chiu, Charles Y.
Published in The Lancet infectious diseases (31.03.2015)
Published in The Lancet infectious diseases (31.03.2015)
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No Viral Association Found in a Set of Differentiated Vulvar Intraepithelial Neoplasia Cases by Human Papillomavirus and Pan-Viral Microarray Testing: e0125292
Saglam, Ozlen, Samayoa, Erik, Somasekar, Sneha, Naccache, Samia, Iwasaki, Akiko, Chiu, Charles Y
Published in PloS one (01.04.2015)
Published in PloS one (01.04.2015)
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Journal Article
Experimental Zika Virus Infection in a New World Monkey Model Reproduces Key Features of the Human Disease
Chiu, Charles Y, Bouquet, Jerome, Li, Tony, Yagi, Shigeo, Sanchez San Martin, Claudia, Tamhankar, Manasi, Hodara, Vida L, Parodi, Laura L, Somasekar, Sneha, Yu, Guixia, Giavedoni, Luis D, Tardif, Suzette, Patterson, Jean
Published in bioRxiv (21.01.2017)
Published in bioRxiv (21.01.2017)
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Discovery of a persistent Zika virus lineage in Bahia, Brazil
Naccache, Samia, Theze, Julien, Sardi, Silvia I, Somasekar, Sneha, Greninger, Alexander L, Bandeira, Antonio C, Campos, Gubio S, Tauro, Laura B, Faria, Nuno R, Pybus, Oliver G, Chiu, Charles Y
Published in bioRxiv (24.04.2016)
Published in bioRxiv (24.04.2016)
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Nanopore DNA Sequencing and Genome Assembly on the International Space Station
Castro-Wallace, Sarah L, Chiu, Charles Y, John, Kristen K, Stahl, Sarah E, Rubins, Kathleen H, Mcintyre, Alexa B R, Dworkin, Jason P, Lupisella, Mark L, Smith, David J, Botkin, Douglas J, Stephenson, Timothy A, Juul, Sissel, Turner, Daniel J, Izquierdo, Fernando, Federman, Scot, Stryke, Doug, Somasekar, Sneha, Alexander, Noah, Yu, Guixia, Mason, Christopher, Burton, Aaron S
Published in bioRxiv (27.09.2016)
Published in bioRxiv (27.09.2016)
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