DNA Methylation Dynamics during In Vivo Differentiation of Blood and Skin Stem Cells
Bock, Christoph, Beerman, Isabel, Lien, Wen-Hui, Smith, Zachary D., Gu, Hongcang, Boyle, Patrick, Gnirke, Andreas, Fuchs, Elaine, Rossi, Derrick J., Meissner, Alexander
Published in Molecular cell (24.08.2012)
Published in Molecular cell (24.08.2012)
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Journal Article
Proliferation-Dependent Alterations of the DNA Methylation Landscape Underlie Hematopoietic Stem Cell Aging
Beerman, Isabel, Bock, Christoph, Garrison, Brian S., Smith, Zachary D., Gu, Hongcang, Meissner, Alexander, Rossi, Derrick J.
Published in Cell stem cell (04.04.2013)
Published in Cell stem cell (04.04.2013)
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Journal Article
Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer
Smith, Zachary D., Shi, Jiantao, Gu, Hongcang, Donaghey, Julie, Clement, Kendell, Cacchiarelli, Davide, Gnirke, Andreas, Michor, Franziska, Meissner, Alexander
Published in Nature (London) (28.09.2017)
Published in Nature (London) (28.09.2017)
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Journal Article
Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines
Bock, Christoph, Kiskinis, Evangelos, Verstappen, Griet, Gu, Hongcang, Boulting, Gabriella, Smith, Zachary D., Ziller, Michael, Croft, Gist F., Amoroso, Mackenzie W., Oakley, Derek H., Gnirke, Andreas, Eggan, Kevin, Meissner, Alexander
Published in Cell (04.02.2011)
Published in Cell (04.02.2011)
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Journal Article
Tet1 Regulates Adult Hippocampal Neurogenesis and Cognition
Zhang, Run-Rui, Cui, Qing-Yan, Murai, Kiyohito, Lim, Yen Ching, Smith, Zachary D., Jin, Shengnan, Ye, Peng, Rosa, Luis, Lee, Yew Kok, Wu, Hai-Ping, Liu, Wei, Xu, Zhi-Mei, Yang, Lu, Ding, Yu-Qiang, Tang, Fuchou, Meissner, Alexander, Ding, Chunming, Shi, Yanhong, Xu, Guo-Liang
Published in Cell stem cell (01.08.2013)
Published in Cell stem cell (01.08.2013)
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Journal Article
Genetic determinants and epigenetic effects of pioneer-factor occupancy
Donaghey, Julie, Thakurela, Sudhir, Charlton, Jocelyn, Chen, Jennifer S., Smith, Zachary D., Gu, Hongcang, Pop, Ramona, Clement, Kendell, Stamenova, Elena K., Karnik, Rahul, Kelley, David R., Gifford, Casey A., Cacchiarelli, Davide, Rinn, John L., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Published in Nature genetics (01.02.2018)
Published in Nature genetics (01.02.2018)
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Journal Article
Dynamic single-cell imaging of direct reprogramming reveals an early specifying event
Meissner, Alexander, Smith, Zachary D, Nachman, Iftach, Regev, Aviv
Published in Nature biotechnology (01.05.2010)
Published in Nature biotechnology (01.05.2010)
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Journal Article
Reprogramming Factor Expression Initiates Widespread Targeted Chromatin Remodeling
Koche, Richard P., Smith, Zachary D., Adli, Mazhar, Gu, Hongcang, Ku, Manching, Gnirke, Andreas, Bernstein, Bradley E., Meissner, Alexander
Published in Cell stem cell (07.01.2011)
Published in Cell stem cell (07.01.2011)
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Journal Article
Hijacking of transcriptional condensates by endogenous retroviruses
Asimi, Vahid, Sampath Kumar, Abhishek, Niskanen, Henri, Riemenschneider, Christina, Hetzel, Sara, Naderi, Julian, Fasching, Nina, Popitsch, Niko, Du, Manyu, Kretzmer, Helene, Smith, Zachary D., Weigert, Raha, Walther, Maria, Mamde, Sainath, Meierhofer, David, Wittler, Lars, Buschow, René, Timmermann, Bernd, Cisse, Ibrahim I., Ameres, Stefan L., Meissner, Alexander, Hnisz, Denes
Published in Nature genetics (01.08.2022)
Published in Nature genetics (01.08.2022)
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Journal Article
Smart-RRBS for single-cell methylome and transcriptome analysis
Gu, Hongcang, Raman, Ayush T., Wang, Xiaoxue, Gaiti, Federico, Chaligne, Ronan, Mohammad, Arman W., Arczewska, Aleksandra, Smith, Zachary D., Landau, Dan A., Aryee, Martin J., Meissner, Alexander, Gnirke, Andreas
Published in Nature protocols (01.08.2021)
Published in Nature protocols (01.08.2021)
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Journal Article
Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
Meissner, Alexander, Gu, Hongcang, Bock, Christoph, Mikkelsen, Tarjei S, Jäger, Natalie, Smith, Zachary D, Tomazou, Eleni, Gnirke, Andreas, Lander, Eric S
Published in Nature methods (01.02.2010)
Published in Nature methods (01.02.2010)
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Journal Article
High-throughput bisulfite sequencing in mammalian genomes
Smith, Zachary D., Gu, Hongcang, Bock, Christoph, Gnirke, Andreas, Meissner, Alexander
Published in Methods (San Diego, Calif.) (01.07.2009)
Published in Methods (San Diego, Calif.) (01.07.2009)
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Journal Article
In vivo Firre and Dxz4 deletion elucidates roles for autosomal gene regulation
Andergassen, Daniel, Smith, Zachary D, Lewandowski, Jordan P, Gerhardinger, Chiara, Meissner, Alexander, Rinn, John L
Published in eLife (18.11.2019)
Published in eLife (18.11.2019)
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Journal Article
Mouse ooplasm confers context-specific reprogramming capacity
Chan, Michelle M, Smith, Zachary D, Egli, Dieter, Regev, Aviv, Meissner, Alexander
Published in Nature genetics (01.09.2012)
Published in Nature genetics (01.09.2012)
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Journal Article
A unique regulatory phase of DNA methylation in the early mammalian embryo
SMITH, Zachary D, CHAN, Michelle M, MIKKELSEN, Tarjei S, HONGCANG GU, GNIRKE, Andreas, REGEV, Aviv, MEISSNER, Alexander
Published in Nature (London) (28.03.2012)
Published in Nature (London) (28.03.2012)
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Journal Article