Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts
Bell, Jason C, Jukam, David, Teran, Nicole A, Risca, Viviana I, Smith, Owen K, Johnson, Whitney L, Skotheim, Jan M, Greenleaf, William James, Straight, Aaron F
Published in eLife (12.04.2018)
Published in eLife (12.04.2018)
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Journal Article
The replication initiation determinant protein (RepID) modulates replication by recruiting CUL4 to chromatin
Jang, Sang-Min, Zhang, Ya, Utani, Koichi, Fu, Haiqing, Redon, Christophe E, Marks, Anna B, Smith, Owen K, Redmond, Catherine J, Baris, Adrian M, Tulchinsky, Danielle A, Aladjem, Mirit I
Published in Nature communications (17.07.2018)
Published in Nature communications (17.07.2018)
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Journal Article
Replication origins: determinants or consequences of nuclear organization?
Marks, Anna B, Smith, Owen K, Aladjem, Mirit I
Published in Current opinion in genetics & development (01.04.2016)
Published in Current opinion in genetics & development (01.04.2016)
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Journal Article
A replicator-specific binding protein essential for site-specific initiation of DNA replication in mammalian cells
Zhang, Ya, Huang, Liang, Fu, Haiqing, Smith, Owen K, Lin, Chii Mei, Utani, Koichi, Rao, Mishal, Reinhold, William C, Redon, Christophe E, Ryan, Michael, Kim, RyangGuk, You, Yang, Hanna, Harlington, Boisclair, Yves, Long, Qiaoming, Aladjem, Mirit I
Published in Nature communications (08.06.2016)
Published in Nature communications (08.06.2016)
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Journal Article
Distinct epigenetic features of differentiation-regulated replication origins
Smith, Owen K, Kim, RyanGuk, Fu, Haiqing, Martin, Melvenia M, Lin, Chii Mei, Utani, Koichi, Zhang, Ya, Marks, Anna B, Lalande, Marc, Chamberlain, Stormy, Libbrecht, Maxwell W, Bouhassira, Eric E, Ryan, Michael C, Noble, William S, Aladjem, Mirit I
Published in Epigenetics & chromatin (10.05.2016)
Published in Epigenetics & chromatin (10.05.2016)
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Journal Article
Chromatin-Associated RNA Sequencing (ChAR-seq)
Jukam, David, Limouse, Charles, Smith, Owen K, Risca, Viviana I, Bell, Jason C, Straight, Aaron F
Published in Current protocols in molecular biology (Print) (01.04.2019)
Published in Current protocols in molecular biology (Print) (01.04.2019)
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Journal Article
Molecular conflicts disrupting centromere maintenance contribute to Xenopus hybrid inviability
Kitaoka, Maiko, Smith, Owen K., Straight, Aaron F., Heald, Rebecca
Published in Current biology (26.09.2022)
Published in Current biology (26.09.2022)
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Journal Article
DiMeLo-seq: a long-read, single-molecule method for mapping protein-DNA interactions genome wide
Altemose, Nicolas, Maslan, Annie, Smith, Owen K, Sundararajan, Kousik, Brown, Rachel R, Mishra, Reet, Detweiler, Angela M, Neff, Norma, Miga, Karen H, Straight, Aaron F, Streets, Aaron
Published in Nature methods (01.06.2022)
Published in Nature methods (01.06.2022)
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Journal Article
Phosphorylated SIRT1 associates with replication origins to prevent excess replication initiation and preserve genomic stability
Utani, Koichi, Fu, Haiqing, Jang, Sang-Min, Marks, Anna B, Smith, Owen K, Zhang, Ya, Redon, Christophe E, Shimizu, Noriaki, Aladjem, Mirit I
Published in Nucleic acids research (27.07.2017)
Published in Nucleic acids research (27.07.2017)
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Journal Article
Identification and characterization of centromeric sequences in Xenopus laevis
Smith, Owen K, Limouse, Charles, Fryer, Kelsey A, Teran, Nicole A, Sundararajan, Kousik, Heald, Rebecca, Straight, Aaron F
Published in Genome research (01.06.2021)
Published in Genome research (01.06.2021)
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Journal Article
Temporal association of ORCA/LRWD1 to late-firing origins during G1 dictates heterochromatin replication and organization
Wang, Yating, Khan, Abid, Marks, Anna B, Smith, Owen K, Giri, Sumanprava, Lin, Yo-Chuen, Creager, Rachel, MacAlpine, David M, Prasanth, Kannanganattu V, Aladjem, Mirit I, Prasanth, Supriya G
Published in Nucleic acids research (17.03.2017)
Published in Nucleic acids research (17.03.2017)
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Journal Article
DiMeLo-seq: a long-read, single-molecule method for mapping protein–DNA interactions genome wide
Altemose, Nicolas, Maslan, Annie, Smith, Owen K., Sundararajan, Kousik, Brown, Rachel R., Mishra, Reet, Detweiler, Angela M., Neff, Norma, Miga, Karen H., Straight, Aaron F., Streets, Aaron
Published in Nature methods (08.04.2022)
Published in Nature methods (08.04.2022)
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Journal Article
ColoWeb: a resource for analysis of colocalization of genomic features
Kim, RyangGuk, Smith, Owen K, Wong, Wing Chung, Ryan, Alex M, Ryan, Michael C, Aladjem, Mirit I
Published in BMC genomics (28.02.2015)
Published in BMC genomics (28.02.2015)
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Journal Article
DiMeLo-seq: a long-read, single-molecule method for mapping protein-DNA interactions genome-wide
Altemose, Nicolas, Maslan, Annie, Smith, Owen K, Sundararajan, Kousik, Brown, Rachel R, Detweiler, Angela M, Neff, Norma, Miga, Karen H, Straight, Aaron F, Streets, Aaron
Published in bioRxiv (07.07.2021)
Published in bioRxiv (07.07.2021)
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Paper
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs
Bredeson, Jessen V, Mudd, Austin B, Medina-Ruiz, Sofia, Mitros, Therese, Smith, Owen K, Miller, Kelly E, Lyons, Jessica B, Batra, Sanjit S, Park, Joseph, Berkoff, Kodiak C, Plott, Christopher, Grimwood, Jane, Schmutz, Jeremy, Aguirre-Figueroa, Guadalupe, Khokha, Mustafa K, Lane, Maura, Philipp, Isabelle, Laslo, Mara, Hanken, James, Kerdivel, Gwenneg, Buisine, Nicolas, Sachs, Laurent M, Buchholz, Daniel R, Kwon, Taejoon, Smith-Parker, Heidi, Gridi-Papp, Marcos, Ryan, Michael J, Denton, Robert D, Malone, John H, Wallingford, John B, Straight, Aaron F, Heald, Rebecca, Hockemeyer, Dirk, Harland, Richard M, Rokhsar, Daniel S
Published in bioRxiv (18.10.2021)
Published in bioRxiv (18.10.2021)
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