RepeatModeler2 for automated genomic discovery of transposable element families
Flynn, Jullien M., Hubley, Robert, Goubert, Clément, Rosenb, Jeb, Clark, Andrew G., Feschotte, Cédric, Smit, Arian F.
Published in Proceedings of the National Academy of Sciences - PNAS (28.04.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (28.04.2020)
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The Dfam community resource of transposable element families, sequence models, and genome annotations
Storer, Jessica, Hubley, Robert, Rosen, Jeb, Wheeler, Travis J, Smit, Arian F
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RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics
Best, Myron G., Sol, Nik, Kooi, Irsan, Tannous, Jihane, Westerman, Bart A., Rustenburg, François, Schellen, Pepijn, Verschueren, Heleen, Post, Edward, Koster, Jan, Ylstra, Bauke, Ameziane, Najim, Dorsman, Josephine, Smit, Egbert F., Verheul, Henk M., Noske, David P., Reijneveld, Jaap C., Nilsson, R. Jonas A., Tannous, Bakhos A., Wesseling, Pieter, Wurdinger, Thomas
Published in Cancer cell (09.11.2015)
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Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing
Roach, Jared C, Glusman, Gustavo, Smit, Arian F.A, Huff, Chad D, Hubley, Robert, Shannon, Paul T, Rowen, Lee, Pant, Krishna P, Goodman, Nathan, Bamshad, Michael, Shendure, Jay, Drmanac, Radoje, Jorde, Lynn B, Hood, Leroy, Galas, David J
Published in Science (American Association for the Advancement of Science) (30.04.2010)
Published in Science (American Association for the Advancement of Science) (30.04.2010)
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Challenges in Establishing Pure Lung Cancer Organoids Limit Their Utility for Personalized Medicine
Dijkstra, Krijn K., Monkhorst, Kim, Schipper, Luuk J., Hartemink, Koen J., Smit, Egbert F., Kaing, Sovann, de Groot, Rosa, Wolkers, Monika C., Clevers, Hans, Cuppen, Edwin, Voest, Emile E.
Published in Cell reports (Cambridge) (05.05.2020)
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Predictors of treatment dropout in self-guided web-based interventions for depression: an ‘individual patient data’ meta-analysis
Karyotaki, E., Kleiboer, A., Smit, F., Turner, D. T., Pastor, A. M., Andersson, G., Berger, T., Botella, C., Breton, J. M., Carlbring, P., Christensen, H., de Graaf, E., Griffiths, K., Donker, T., Farrer, L., Huibers, M. J. H., Lenndin, J., Mackinnon, A., Meyer, B., Moritz, S., Riper, H., Spek, V., Vernmark, K., Cuijpers, P.
Published in Psychological medicine (01.10.2015)
Published in Psychological medicine (01.10.2015)
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Whole body PD-1 and PD-L1 positron emission tomography in patients with non-small-cell lung cancer
Niemeijer, A. N., Leung, D., Huisman, M. C., Bahce, I., Hoekstra, O. S., van Dongen, G. A. M. S., Boellaard, R., Du, S., Hayes, W., Smith, R., Windhorst, A. D., Hendrikse, N. H., Poot, A., Vugts, D. J., Thunnissen, E., Morin, P., Lipovsek, D., Donnelly, D. J., Bonacorsi, S. J., Velasquez, L. M., de Gruijl, T. D., Smit, E. F., de Langen, A. J.
Published in Nature communications (07.11.2018)
Published in Nature communications (07.11.2018)
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Crizotinib therapy for advanced lung adenocarcinoma and a ROS1 rearrangement: results from the EUROS1 cohort
Mazières, Julien, Zalcman, Gérard, Crinò, Lucio, Biondani, Pamela, Barlesi, Fabrice, Filleron, Thomas, Dingemans, Anne-Marie C, Léna, Hervé, Monnet, Isabelle, Rothschild, Sacha I, Cappuzzo, Federico, Besse, Benjamin, Thiberville, Luc, Rouvière, Damien, Dziadziuszko, Rafal, Smit, Egbert F, Wolf, Jurgen, Spirig, Christian, Pecuchet, Nicolas, Leenders, Frauke, Heuckmann, Johannes M, Diebold, Joachim, Milia, Julie D, Thomas, Roman K, Gautschi, Oliver
Published in Journal of clinical oncology (20.03.2015)
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Intrinsic resistance to MEK inhibition in KRAS mutant lung and colon cancer through transcriptional induction of ERBB3
Sun, Chong, Hobor, Sebastijan, Bertotti, Andrea, Zecchin, Davide, Huang, Sidong, Galimi, Francesco, Cottino, Francesca, Prahallad, Anirudh, Grernrum, Wipawadee, Tzani, Anna, Schlicker, Andreas, Wessels, Lodewyk F A, Smit, Egbert F, Thunnissen, Erik, Halonen, Pasi, Lieftink, Cor, Beijersbergen, Roderick L, Di Nicolantonio, Federica, Bardelli, Alberto, Trusolino, Livio, Bernards, Rene
Published in Cell reports (Cambridge) (01.04.2014)
Published in Cell reports (Cambridge) (01.04.2014)
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Rapid Decrease in Delivery of Chemotherapy to Tumors after Anti-VEGF Therapy: Implications for Scheduling of Anti-Angiogenic Drugs
Van der Veldt, Astrid A.M., Lubberink, Mark, Bahce, Idris, Walraven, Maudy, de Boer, Michiel P., Greuter, Henri N.J.M., Hendrikse, N. Harry, Eriksson, Jonas, Windhorst, Albert D., Postmus, Pieter E., Verheul, Henk M., Serné, Erik H., Lammertsma, Adriaan A., Smit, Egbert F.
Published in Cancer cell (17.01.2012)
Published in Cancer cell (17.01.2012)
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Outcomes of Risk-Adapted Fractionated Stereotactic Radiotherapy for Stage I Non–Small-Cell Lung Cancer
Lagerwaard, Frank J., M.D., Ph.D, Haasbeek, Cornelis J.A., M.D, Smit, Egbert F., M.D., Ph.D, Slotman, Ben J., M.D., Ph.D, Senan, S., M.R.C.P., F.R.C.R., Ph.D
Published in International journal of radiation oncology, biology, physics (01.03.2008)
Published in International journal of radiation oncology, biology, physics (01.03.2008)
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Dabrafenib in patients with BRAFV600E -positive advanced non-small-cell lung cancer: a single-arm, multicentre, open-label, phase 2 trial
Planchard, David, MD, Kim, Tae Min, MD, Mazieres, Julien, Prof, Quoix, Elisabeth, Prof, Riely, Gregory, MD, Barlesi, Fabrice, Prof, Souquet, Pierre-Jean, MD, Smit, Egbert F, Prof, Groen, Harry J M, Prof, Kelly, Ronan J, MD, Cho, B C, MD, Socinski, Mark A, Prof, Pandite, Lini, MD, Nase, Christine, BSN, Ma, Bo, PhD, D'Amelio, Anthony, PhD, Mookerjee, Bijoyesh, MD, Curtis, C Martin, BS, Johnson, Bruce E, Prof
Published in The lancet oncology (01.05.2016)
Published in The lancet oncology (01.05.2016)
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Influence of initial severity of depression on effectiveness of low intensity interventions: meta-analysis of individual patient data
Bower, Peter, Kontopantelis, Evangelos, Sutton, Alex, Kendrick, Tony, Richards, David A, Gilbody, Simon, Knowles, Sarah, Cuijpers, Pim, Andersson, Gerhard, Christensen, Helen, Meyer, Björn, Huibers, Marcus, Smit, Filip, van Straten, Annemieke, Warmerdam, Lisanne, Barkham, Michael, Bilich, Linda, Lovell, Karina, Liu, Emily Tung-Hsueh
Published in BMJ (Online) (26.02.2013)
Published in BMJ (Online) (26.02.2013)
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2nd ESMO Consensus Conference on Lung Cancer: non-small-cell lung cancer first-line/second and further lines of treatment in advanced disease
Besse, B., Adjei, A., Baas, P., Meldgaard, P., Nicolson, M., Paz-Ares, L., Reck, M., Smit, E.F., Syrigos, K., Stahel, R., Felip, E., Peters, S., Stahel, Rolf, Felip, Enriqueta, Peters, Solange, Kerr, Keith, Besse, Benjamin, Vansteenkiste, Johan, Eberhardt, Wilfried, Edelman, Martin, Mok, Tony, O'Byrne, Ken, Novello, Silvia, Bubendorf, Lukas, Marchetti, Antonio, Baas, Paul, Reck, Martin, Syrigos, Konstantinos, Paz-Ares, Luis, Smit, Egbert F., Meldgaard, Peter, Adjei, Alex, Nicolson, Marianne, Crinò, Lucio, Van Schil, Paul, Senan, Suresh, Faivre-Finn, Corinne, Rocco, Gaetano, Veronesi, Giulia, Douillard, Jean-Yves, Lim, Eric, Dooms, Christophe, Weder, Walter, De Ruysscher, Dirk, Le Pechoux, Cecile, De Leyn, Paul, Westeel, Virginie
Published in Annals of oncology (01.08.2014)
Published in Annals of oncology (01.08.2014)
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Conference Proceeding
Repeatability of Radiomic Features in Non-Small-Cell Lung Cancer [18F]FDG-PET/CT Studies: Impact of Reconstruction and Delineation
van Velden, Floris H. P., Kramer, Gerbrand M., Frings, Virginie, Nissen, Ida A., Mulder, Emma R., de Langen, Adrianus J., Hoekstra, Otto S., Smit, Egbert F., Boellaard, Ronald
Published in Molecular imaging and biology (01.10.2016)
Published in Molecular imaging and biology (01.10.2016)
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The Potential of Combined Immunotherapy and Antiangiogenesis for the Synergistic Treatment of Advanced NSCLC
Manegold, Christian, Dingemans, Anne-Marie C., Gray, Jhanelle E., Nakagawa, Kazuhiko, Nicolson, Marianne, Peters, Solange, Reck, Martin, Wu, Yi-Long, Brustugun, Odd Terje, Crinò, Lucio, Felip, Enriqueta, Fennell, Dean, Garrido, Pilar, Huber, Rudolf M., Marabelle, Aurélien, Moniuszko, Marcin, Mornex, Françoise, Novello, Silvia, Papotti, Mauro, Pérol, Maurice, Smit, Egbert F., Syrigos, Kostas, van Meerbeeck, Jan P., van Zandwijk, Nico, Chih-Hsin Yang, James, Zhou, Caicun, Vokes, Everett
Published in Journal of thoracic oncology (01.02.2017)
Published in Journal of thoracic oncology (01.02.2017)
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Brigatinib in Crizotinib-Refractory ALK+ NSCLC: 2-Year Follow-up on Systemic and Intracranial Outcomes in the Phase 2 ALTA Trial
Huber, Rudolf M., Hansen, Karin H., Paz-Ares Rodríguez, Luis, West, Howard L., Reckamp, Karen L., Leighl, Natasha B., Tiseo, Marcello, Smit, Egbert F., Kim, Dong-Wan, Gettinger, Scott N., Hochmair, Maximilian J., Kim, Sang-We, Langer, Corey J., Ahn, Myung-Ju, Kim, Edward S., Kerstein, David, Groen, Harry J.M., Camidge, D. Ross
Published in Journal of thoracic oncology (01.03.2020)
Published in Journal of thoracic oncology (01.03.2020)
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Randomized Controlled Trial of Resection Versus Radiotherapy After Induction Chemotherapy in Stage IIIA-N2 Non–Small-Cell Lung Cancer
van Meerbeeck, Jan P., Kramer, Gijs W. P. M., Van Schil, Paul E. Y., Legrand, Catherine, Smit, Egbert F., Schramel, Franz, Tjan-Heijnen, Vivianne C., Biesma, Bonne, Debruyne, Channa, van Zandwijk, Nico, Splinter, Ted A. W., Giaccone, Giuseppe
Published in JNCI : Journal of the National Cancer Institute (21.03.2007)
Published in JNCI : Journal of the National Cancer Institute (21.03.2007)
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