Dr.VAE: improving drug response prediction via modeling of drug perturbation effects
Rampášek, Ladislav, Hidru, Daniel, Smirnov, Petr, Haibe-Kains, Benjamin, Goldenberg, Anna
Published in Bioinformatics (01.10.2019)
Published in Bioinformatics (01.10.2019)
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Journal Article
PharmacoDB: an integrative database for mining in vitro anticancer drug screening studies
Smirnov, Petr, Kofia, Victor, Maru, Alexander, Freeman, Mark, Ho, Chantal, El-Hachem, Nehme, Adam, George-Alexandru, Ba-alawi, Wail, Safikhani, Zhaleh, Haibe-Kains, Benjamin
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Integrative Pharmacogenomics Analysis of Patient-Derived Xenografts
Mer, Arvind S, Ba-Alawi, Wail, Smirnov, Petr, Wang, Yi X, Brew, Ben, Ortmann, Janosch, Tsao, Ming-Sound, Cescon, David W, Goldenberg, Anna, Haibe-Kains, Benjamin
Published in Cancer research (Chicago, Ill.) (01.09.2019)
Published in Cancer research (Chicago, Ill.) (01.09.2019)
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Journal Article
Orchestrating and sharing large multimodal data for transparent and reproducible research
Mammoliti, Anthony, Smirnov, Petr, Nakano, Minoru, Safikhani, Zhaleh, Eeles, Christopher, Seo, Heewon, Nair, Sisira Kadambat, Mer, Arvind S., Smith, Ian, Ho, Chantal, Beri, Gangesh, Kusko, Rebecca, Lin, Eva, Yu, Yihong, Martin, Scott, Hafner, Marc, Haibe-Kains, Benjamin
Published in Nature communications (04.10.2021)
Published in Nature communications (04.10.2021)
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Journal Article
The mevalonate pathway is an actionable vulnerability of t(4;14)-positive multiple myeloma
Longo, Joseph, Smirnov, Petr, Li, Zhihua, Branchard, Emily, van Leeuwen, Jenna E., Licht, Jonathan D., Haibe-Kains, Benjamin, Andrews, David W., Keats, Jonathan J., Pugh, Trevor J., Trudel, Suzanne, Penn, Linda Z.
Published in Leukemia (01.03.2021)
Published in Leukemia (01.03.2021)
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Journal Article
Gene isoforms as expression-based biomarkers predictive of drug response in vitro
Safikhani, Zhaleh, Smirnov, Petr, Thu, Kelsie L., Silvester, Jennifer, El-Hachem, Nehme, Quevedo, Rene, Lupien, Mathieu, Mak, Tak W., Cescon, David, Haibe-Kains, Benjamin
Published in Nature communications (24.10.2017)
Published in Nature communications (24.10.2017)
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Journal Article
Evaluation of statistical approaches for association testing in noisy drug screening data
Smirnov, Petr, Smith, Ian, Safikhani, Zhaleh, Ba-Alawi, Wail, Khodakarami, Farnoosh, Lin, Eva, Yu, Yihong, Martin, Scott, Ortmann, Janosch, Aittokallio, Tero, Hafner, Marc, Haibe-Kains, Benjamin
Published in BMC bioinformatics (18.05.2022)
Published in BMC bioinformatics (18.05.2022)
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Journal Article
Insulin receptor loss impairs mammary tumorigenesis in mice
Podmore, Lauren, Poloz, Yekaterina, Iorio, Catherine, Mouaaz, Samar, Nixon, Kevin, Smirnov, Petr, McDonnell, Brianna, Lam, Sonya, Zhang, Bowen, Tharmapalan, Pirashaanthy, Sarkar, Soumili, Vyas, Foram, Ennis, Marguerite, Dowling, Ryan, Stambolic, Vuk
Published in Cell reports (Cambridge) (28.11.2023)
Published in Cell reports (Cambridge) (28.11.2023)
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Journal Article
Integrative Cancer Pharmacogenomics to Infer Large-Scale Drug Taxonomy
El-Hachem, Nehme, Gendoo, Deena M A, Ghoraie, Laleh Soltan, Safikhani, Zhaleh, Smirnov, Petr, Chung, Christina, Deng, Kenan, Fang, Ailsa, Birkwood, Erin, Ho, Chantal, Isserlin, Ruth, Bader, Gary D, Goldenberg, Anna, Haibe-Kains, Benjamin
Published in Cancer research (Chicago, Ill.) (01.06.2017)
Published in Cancer research (Chicago, Ill.) (01.06.2017)
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Journal Article
Revisiting inconsistency in large pharmacogenomic studies [version 3; peer review: 2 approved, 1 approved with reservations]
Safikhani, Zhaleh, Smirnov, Petr, Freeman, Mark, El-Hachem, Nehme, She, Adrian, Rene, Quevedo, Goldenberg, Anna, Birkbak, Nicolai J, Hatzis, Christos, Shi, Leming, Beck, Andrew H, Aerts, Hugo J.W.L, Quackenbush, John, Haibe-Kains, Benjamin
Published in F1000 research (01.01.2016)
Published in F1000 research (01.01.2016)
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Journal Article
Tissue specificity of in vitro drug sensitivity
Yao, Fupan, Madani Tonekaboni, Seyed Ali, Safikhani, Zhaleh, Smirnov, Petr, El-Hachem, Nehme, Freeman, Mark, Manem, Venkata Satya Kumar, Haibe-Kains, Benjamin
Published in Journal of the American Medical Informatics Association : JAMIA (01.02.2018)
Published in Journal of the American Medical Informatics Association : JAMIA (01.02.2018)
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Journal Article
Ultrastructure and functional morphology of dermal glands in the freshwater mite Limnochares aquatica (L., 1758) (Acariformes, Limnocharidae)
Shatrov, Andrey B., Soldatenko, Elena V., Stolbov, Vitaliy A., Smirnov, Petr A., Petukhova, Olga A.
Published in Arthropod structure & development (01.03.2019)
Published in Arthropod structure & development (01.03.2019)
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Journal Article
Author Correction: Gene isoforms as expression-based biomarkers predictive of drug response in vitro
Safikhani, Zhaleh, Smirnov, Petr, Thu, Kelsie L., Silvester, Jennifer, El-Hachem, Nehme, Quevedo, Rene, Lupien, Mathieu, Mak, Tak W., Cescon, David, Haibe-Kains, Benjamin
Published in Nature communications (09.01.2018)
Published in Nature communications (09.01.2018)
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Journal Article
Issues of physical interaction of unmanned aircraft manipulators with ground objects
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Journal Article
Conference Proceeding
Assessment of pharmacogenomic agreement
Safikhani, Zhaleh, El-Hachem, Nehme, Quevedo, Rene, Smirnov, Petr, Goldenberg, Anna, Juul Birkbak, Nicolai, Mason, Christopher, Hatzis, Christos, Shi, Leming, Aerts, Hugo Jwl, Quackenbush, John, Haibe-Kains, Benjamin
Published in F1000 research (2016)
Published in F1000 research (2016)
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Journal Article