Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
Smallwood, Sébastien A, Lee, Heather J, Angermueller, Christof, Krueger, Felix, Saadeh, Heba, Peat, Julian, Andrews, Simon R, Stegle, Oliver, Reik, Wolf, Kelsey, Gavin
Published in Nature methods (01.08.2014)
Published in Nature methods (01.08.2014)
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Journal Article
Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity
Clark, Stephen J, Lee, Heather J, Smallwood, Sébastien A, Kelsey, Gavin, Reik, Wolf
Published in Genome Biology (18.04.2016)
Published in Genome Biology (18.04.2016)
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Journal Article
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
Angermueller, Christof, Clark, Stephen J, Lee, Heather J, Macaulay, Iain C, Teng, Mabel J, Hu, Tim Xiaoming, Krueger, Felix, Smallwood, Sebastien, Ponting, Chris P, Voet, Thierry, Kelsey, Gavin, Stegle, Oliver, Reik, Wolf
Published in Nature methods (01.03.2016)
Published in Nature methods (01.03.2016)
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Journal Article
Dynamic changes in histone modifications precede de novo DNA methylation in oocytes
Stewart, Kathleen R, Veselovska, Lenka, Kim, Jeesun, Huang, Jiahao, Saadeh, Heba, Tomizawa, Shin-ichi, Smallwood, Sébastien A, Chen, Taiping, Kelsey, Gavin
Published in Genes & development (01.12.2015)
Published in Genes & development (01.12.2015)
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Journal Article
The BTB-domain transcription factor ZBTB2 recruits chromatin remodelers and a histone chaperone during the exit from pluripotency
Olivieri, Daniel, Paramanathan, Sujani, Bardet, Anaïs F., Hess, Daniel, Smallwood, Sébastien A., Elling, Ulrich, Betschinger, Joerg
Published in The Journal of biological chemistry (01.08.2021)
Published in The Journal of biological chemistry (01.08.2021)
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Journal Article
Continuous Histone Replacement by Hira Is Essential for Normal Transcriptional Regulation and De Novo DNA Methylation during Mouse Oogenesis
Nashun, Buhe, Hill, Peter W.S., Smallwood, Sebastien A., Dharmalingam, Gopuraja, Amouroux, Rachel, Clark, Stephen J., Sharma, Vineet, Ndjetehe, Elodie, Pelczar, Pawel, Festenstein, Richard J., Kelsey, Gavin, Hajkova, Petra
Published in Molecular cell (19.11.2015)
Published in Molecular cell (19.11.2015)
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Journal Article
Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape
Veselovska, Lenka, Smallwood, Sebastien A, Saadeh, Heba, Stewart, Kathleen R, Krueger, Felix, Maupetit-Méhouas, Stéphanie, Arnaud, Philippe, Tomizawa, Shin-Ichi, Andrews, Simon, Kelsey, Gavin
Published in Genome Biology (25.09.2015)
Published in Genome Biology (25.09.2015)
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Journal Article
Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
Gahurova, Lenka, Tomizawa, Shin-Ichi, Smallwood, Sébastien A, Stewart-Morgan, Kathleen R, Saadeh, Heba, Kim, Jeesun, Andrews, Simon R, Chen, Taiping, Kelsey, Gavin
Published in Epigenetics & chromatin (12.05.2017)
Published in Epigenetics & chromatin (12.05.2017)
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Journal Article
Transcription is required for establishment of germline methylation marks at imprinted genes
Chotalia, Mita, Smallwood, Sebastien A, Ruf, Nico, Dawson, Claire, Lucifero, Diana, Frontera, Marga, James, Katherine, Dean, Wendy, Kelsey, Gavin
Published in Genes & development (01.01.2009)
Published in Genes & development (01.01.2009)
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Journal Article
Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency
Rulands, Steffen, Lee, Heather J., Clark, Stephen J., Angermueller, Christof, Smallwood, Sébastien A., Krueger, Felix, Mohammed, Hisham, Dean, Wendy, Nichols, Jennifer, Rugg-Gunn, Peter, Kelsey, Gavin, Stegle, Oliver, Simons, Benjamin D., Reik, Wolf
Published in Cell systems (25.07.2018)
Published in Cell systems (25.07.2018)
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Journal Article
Lysosomal Signaling Licenses Embryonic Stem Cell Differentiation via Inactivation of Tfe3
Villegas, Florian, Lehalle, Daphné, Mayer, Daniela, Rittirsch, Melanie, Stadler, Michael B., Zinner, Marietta, Olivieri, Daniel, Vabres, Pierre, Duplomb-Jego, Laurence, De Bont, Eveline S.J.M., Duffourd, Yannis, Duijkers, Floor, Avila, Magali, Geneviève, David, Houcinat, Nada, Jouan, Thibaud, Kuentz, Paul, Lichtenbelt, Klaske D., Thauvin-Robinet, Christel, St-Onge, Judith, Thevenon, Julien, van Gassen, Koen L.I., van Haelst, Mieke, van Koningsbruggen, Silvana, Hess, Daniel, Smallwood, Sebastien A., Rivière, Jean-Baptiste, Faivre, Laurence, Betschinger, Joerg
Published in Cell stem cell (07.02.2019)
Published in Cell stem cell (07.02.2019)
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Journal Article
Detailed Analysis of the Genetic and Epigenetic Signatures of iPSC-Derived Mesodiencephalic Dopaminergic Neurons
Roessler, Reinhard, Smallwood, Sebastien A., Veenvliet, Jesse V., Pechlivanoglou, Petros, Peng, Su-Ping, Chakrabarty, Koushik, Groot-Koerkamp, Marian J.A., Pasterkamp, R. Jeroen, Wesseling, Evelyn, Kelsey, Gavin, Boddeke, Erik, Smidt, Marten P., Copray, Sjef
Published in Stem cell reports (08.04.2014)
Published in Stem cell reports (08.04.2014)
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Journal Article
Dynamic CpG island methylation landscape in oocytes and preimplantation embryos
Kelsey, Gavin, Smallwood, Sébastien A, Tomizawa, Shin-ichi, Krueger, Felix, Ruf, Nico, Carli, Natasha, Segonds-Pichon, Anne, Sato, Shun, Hata, Kenichiro, Andrews, Simon R
Published in Nature genetics (01.08.2011)
Published in Nature genetics (01.08.2011)
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Journal Article
A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity
Ginno, Paul Adrian, Gaidatzis, Dimos, Feldmann, Angelika, Hoerner, Leslie, Imanci, Dilek, Burger, Lukas, Zilbermann, Frederic, Peters, Antoine H F M, Edenhofer, Frank, Smallwood, Sébastien A, Krebs, Arnaud R, Schübeler, Dirk
Published in Nature communications (29.05.2020)
Published in Nature communications (29.05.2020)
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Journal Article
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation
Redolfi, Josef, Zhan, Yinxiu, Valdes-Quezada, Christian, Kryzhanovska, Mariya, Guerreiro, Isabel, Iesmantavicius, Vytautas, Pollex, Tim, Grand, Ralph S, Mulugeta, Eskeatnaf, Kind, Jop, Tiana, Guido, Smallwood, Sebastien A, de Laat, Wouter, Giorgetti, Luca
Published in Nature structural & molecular biology (01.06.2019)
Published in Nature structural & molecular biology (01.06.2019)
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Journal Article
BANP opens chromatin and activates CpG-island-regulated genes
Grand, Ralph S, Burger, Lukas, Gräwe, Cathrin, Michael, Alicia K, Isbel, Luke, Hess, Daniel, Hoerner, Leslie, Iesmantavicius, Vytautas, Durdu, Sevi, Pregnolato, Marco, Krebs, Arnaud R, Smallwood, Sébastien A, Thomä, Nicolas, Vermeulen, Michiel, Schübeler, Dirk
Published in Nature (London) (05.08.2021)
Published in Nature (London) (05.08.2021)
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