Dynamic CpG island methylation landscape in oocytes and preimplantation embryos
Kelsey, Gavin, Smallwood, Sébastien A, Tomizawa, Shin-ichi, Krueger, Felix, Ruf, Nico, Carli, Natasha, Segonds-Pichon, Anne, Sato, Shun, Hata, Kenichiro, Andrews, Simon R
Published in Nature genetics (01.08.2011)
Published in Nature genetics (01.08.2011)
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A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity
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Published in Nature communications (29.05.2020)
Published in Nature communications (29.05.2020)
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BANP opens chromatin and activates CpG-island-regulated genes
Grand, Ralph S., Burger, Lukas, Gräwe, Cathrin, Michael, Alicia K., Isbel, Luke, Hess, Daniel, Hoerner, Leslie, Iesmantavicius, Vytautas, Durdu, Sevi, Pregnolato, Marco, Krebs, Arnaud R., Smallwood, Sébastien A., Thomä, Nicolas, Vermeulen, Michiel, Schübeler, Dirk
Published in Nature (London) (05.08.2021)
Published in Nature (London) (05.08.2021)
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Genome-wide Bisulfite Sequencing in Zygotes Identifies Demethylation Targets and Maps the Contribution of TET3 Oxidation
Peat, Julian R., Dean, Wendy, Clark, Stephen J., Krueger, Felix, Smallwood, Sébastien A., Ficz, Gabriella, Kim, Jong Kyoung, Marioni, John C., Hore, Timothy A., Reik, Wolf
Published in Cell reports (Cambridge) (24.12.2014)
Published in Cell reports (Cambridge) (24.12.2014)
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Cooperation between HDAC3 and DAX1 mediates lineage restriction of embryonic stem cells
Olivieri, Daniel, Castelli, Eleonora, Kawamura, Yumiko K, Papasaikas, Panagiotis, Lukonin, Ilya, Rittirsch, Melanie, Hess, Daniel, Smallwood, Sébastien A, Stadler, Michael B, Peters, Antoine H F M, Betschinger, Joerg
Published in The EMBO journal (15.06.2021)
Published in The EMBO journal (15.06.2021)
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Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
Angermueller, Christof, Clark, Stephen J, Lee, Heather J, Macaulay, Iain C, Teng, Mabel J, Hu, Tim Xiaoming, Krueger, Felix, Smallwood, Sébastien A, Ponting, Chris P, Voet, Thierry, Kelsey, Gavin, Stegle, Oliver, Reik, Wolf
Published in Nature methods (01.03.2016)
Published in Nature methods (01.03.2016)
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Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
Smallwood, Sébastien A, Lee, Heather J, Angermueller, Christof, Krueger, Felix, Saadeh, Heba, Peat, Julian, Andrews, Simon R, Stegle, Oliver, Reik, Wolf, Kelsey, Gavin
Published in Nature methods (01.08.2014)
Published in Nature methods (01.08.2014)
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Revealing the Large-Scale Network Organization of Growth Hormone-Secreting Cells
Xavier Bonnefont, Lacampagne, Alain, Angela Sanchez-Hormigo, Elodie Fino, Creff, Audrey, Marie-Noelle Mathieu, Sébastien Smallwood, Danielle Carmignac, Pierre Fontanaud, Pierre Travo, Alonso, Gérard, Nathalie Courtois-Coutry, Steve M. Pincus, Iain C. A. F. Robinson, Mollard, Patrice, Guillemin, Roger
Published in Proceedings of the National Academy of Sciences - PNAS (15.11.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (15.11.2005)
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Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity
Clark, Stephen J, Lee, Heather J, Smallwood, Sébastien A, Kelsey, Gavin, Reik, Wolf
Published in Genome Biology (18.04.2016)
Published in Genome Biology (18.04.2016)
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Dynamic changes in histone modifications precede de novo DNA methylation in oocytes
Stewart, Kathleen R, Veselovska, Lenka, Kim, Jeesun, Huang, Jiahao, Saadeh, Heba, Tomizawa, Shin-ichi, Smallwood, Sébastien A, Chen, Taiping, Kelsey, Gavin
Published in Genes & development (01.12.2015)
Published in Genes & development (01.12.2015)
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Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape
Veselovska, Lenka, Smallwood, Sebastien A, Saadeh, Heba, Stewart, Kathleen R, Krueger, Felix, Maupetit-Méhouas, Stéphanie, Arnaud, Philippe, Tomizawa, Shin-Ichi, Andrews, Simon, Kelsey, Gavin
Published in Genome Biology (25.09.2015)
Published in Genome Biology (25.09.2015)
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Nonlinear control of transcription through enhancer–promoter interactions
Zuin, Jessica, Roth, Gregory, Zhan, Yinxiu, Cramard, Julie, Redolfi, Josef, Piskadlo, Ewa, Mach, Pia, Kryzhanovska, Mariya, Tihanyi, Gergely, Kohler, Hubertus, Eder, Mathias, Leemans, Christ, van Steensel, Bas, Meister, Peter, Smallwood, Sebastien, Giorgetti, Luca
Published in Nature (London) (21.04.2022)
Published in Nature (London) (21.04.2022)
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The BTB-domain transcription factor ZBTB2 recruits chromatin remodelers and a histone chaperone during the exit from pluripotency
Olivieri, Daniel, Paramanathan, Sujani, Bardet, Anaïs F., Hess, Daniel, Smallwood, Sébastien A., Elling, Ulrich, Betschinger, Joerg
Published in The Journal of biological chemistry (01.08.2021)
Published in The Journal of biological chemistry (01.08.2021)
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Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
Gahurova, Lenka, Tomizawa, Shin-Ichi, Smallwood, Sébastien A, Stewart-Morgan, Kathleen R, Saadeh, Heba, Kim, Jeesun, Andrews, Simon R, Chen, Taiping, Kelsey, Gavin
Published in Epigenetics & chromatin (12.05.2017)
Published in Epigenetics & chromatin (12.05.2017)
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Continuous Histone Replacement by Hira Is Essential for Normal Transcriptional Regulation and De Novo DNA Methylation during Mouse Oogenesis
Nashun, Buhe, Hill, Peter W.S., Smallwood, Sebastien A., Dharmalingam, Gopuraja, Amouroux, Rachel, Clark, Stephen J., Sharma, Vineet, Ndjetehe, Elodie, Pelczar, Pawel, Festenstein, Richard J., Kelsey, Gavin, Hajkova, Petra
Published in Molecular cell (19.11.2015)
Published in Molecular cell (19.11.2015)
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Cohesin and CTCF control the dynamics of chromosome folding
Mach, Pia, Kos, Pavel I., Zhan, Yinxiu, Cramard, Julie, Gaudin, Simon, Tünnermann, Jana, Marchi, Edoardo, Eglinger, Jan, Zuin, Jessica, Kryzhanovska, Mariya, Smallwood, Sebastien, Gelman, Laurent, Roth, Gregory, Nora, Elphège P., Tiana, Guido, Giorgetti, Luca
Published in Nature genetics (01.12.2022)
Published in Nature genetics (01.12.2022)
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Multi-omics profiling of mouse gastrulation at single-cell resolution
Argelaguet, Ricard, Clark, Stephen J., Mohammed, Hisham, Stapel, L. Carine, Krueger, Christel, Kapourani, Chantriolnt-Andreas, Imaz-Rosshandler, Ivan, Lohoff, Tim, Xiang, Yunlong, Hanna, Courtney W., Smallwood, Sebastien, Ibarra-Soria, Ximena, Buettner, Florian, Sanguinetti, Guido, Xie, Wei, Krueger, Felix, Göttgens, Berthold, Rugg-Gunn, Peter J., Kelsey, Gavin, Dean, Wendy, Nichols, Jennifer, Stegle, Oliver, Marioni, John C., Reik, Wolf
Published in Nature (London) (01.12.2019)
Published in Nature (London) (01.12.2019)
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