Improved contact predictions using the recognition of protein like contact patterns
Skwark, Marcin J, Raimondi, Daniele, Michel, Mirco, Elofsson, Arne
Published in PLoS computational biology (01.11.2014)
Published in PLoS computational biology (01.11.2014)
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Journal Article
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
Skwark, Marcin J, Croucher, Nicholas J, Puranen, Santeri, Chewapreecha, Claire, Pesonen, Maiju, Xu, Ying Ying, Turner, Paul, Harris, Simon R, Beres, Stephen B, Musser, James M, Parkhill, Julian, Bentley, Stephen D, Aurell, Erik, Corander, Jukka
Published in PLoS genetics (16.02.2017)
Published in PLoS genetics (16.02.2017)
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Journal Article
Improving contact prediction along three dimensions
Feinauer, Christoph, Skwark, Marcin J, Pagnani, Andrea, Aurell, Erik
Published in PLoS computational biology (01.10.2014)
Published in PLoS computational biology (01.10.2014)
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Journal Article
The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer
Saleh, Almutasem, Noguchi, Yasunori, Aramayo, Ricardo, Ivanova, Marina E., Stevens, Kathryn M., Montoya, Alex, Sunidhi, S., Carranza, Nicolas Lopez, Skwark, Marcin J., Speck, Christian
Published in Nature communications (25.05.2022)
Published in Nature communications (25.05.2022)
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Journal Article
Urinary Proteins of Female Domestic Dog ( Canis familiaris ) during Ovarian Cycle
Woszczyło, Martyna, Pasikowski, Paweł, Devaraj, Sankarganesh, Kokocińska, Agata, Szumny, Antoni, Skwark, Marcin J, Niżański, Wojciech, Dzięcioł, Michał
Published in Veterinary sciences (14.04.2023)
Published in Veterinary sciences (14.04.2023)
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Journal Article
Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae
Vedithi, Sundeep Chaitanya, Rodrigues, Carlos H.M., Portelli, Stephanie, Skwark, Marcin J., Das, Madhusmita, Ascher, David B., Blundell, Tom L., Malhotra, Sony
Published in Computational and structural biotechnology journal (01.01.2020)
Published in Computational and structural biotechnology journal (01.01.2020)
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Journal Article
Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery
Waman, Vaishali P., Vedithi, Sundeep Chaitanya, Thomas, Sherine E., Bannerman, Bridget P., Munir, Asma, Skwark, Marcin J., Malhotra, Sony, Blundell, Tom L.
Published in Emerging microbes & infections (01.01.2019)
Published in Emerging microbes & infections (01.01.2019)
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Journal Article
Membrane protein contact and structure prediction using co-evolution in conjunction with machine learning
Teixeira, Pedro L, Mendenhall, Jeff L, Heinze, Sten, Weiner, Brian, Skwark, Marcin J, Meiler, Jens
Published in PloS one (24.05.2017)
Published in PloS one (24.05.2017)
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Journal Article
HARP: a database of structural impacts of systematic missense mutations in drug targets of Mycobacterium leprae
Vedithi, Sundeep Chaitanya, Malhotra, Sony, Skwark, Marcin J., Munir, Asma, Acebrón-García-De-Eulate, Marta, Waman, Vaishali P, Alsulami, Ali, Ascher, David B, Blundell, Tom L
Published in Computational and structural biotechnology journal (01.01.2020)
Published in Computational and structural biotechnology journal (01.01.2020)
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Journal Article
The Collagen Receptor Discoidin Domain Receptor 1b Enhances Integrin β1-Mediated Cell Migration by Interacting With Talin and Promoting Rac1 Activation
Borza, Corina M, Bolas, Gema, Zhang, Xiuqi, Browning Monroe, Mary Beth, Zhang, Ming-Zhi, Meiler, Jens, Skwark, Marcin J, Harris, Raymond C, Lapierre, Lynne A, Goldenring, James R, Hook, Magnus, Rivera, Jose, Brown, Kyle L, Leitinger, Birgit, Tyska, Matthew J, Moser, Markus, Böttcher, Ralph T, Zent, Roy, Pozzi, Ambra
Published in Frontiers in cell and developmental biology (03.03.2022)
Published in Frontiers in cell and developmental biology (03.03.2022)
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Journal Article
PconsFold: improved contact predictions improve protein models
Michel, Mirco, Hayat, Sikander, Skwark, Marcin J, Sander, Chris, Marks, Debora S, Elofsson, Arne
Published in Bioinformatics (01.09.2014)
Published in Bioinformatics (01.09.2014)
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Journal Article
Predicting accurate contacts in thousands of Pfam domain families using PconsC3
Michel, Mirco, Skwark, Marcin J, Menéndez Hurtado, David, Ekeberg, Magnus, Elofsson, Arne
Published in Bioinformatics (Oxford, England) (15.09.2017)
Published in Bioinformatics (Oxford, England) (15.09.2017)
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Journal Article
The influence of manual semen collection in male trained dogs (Canis familiaris), in the presence or absence of a female in estrus, on the concentrations of cortisol, oxytocin, prolactin and testosterone
Woszczyło, Martyna, Szumny, Antoni, Knap, Piotr, Jezierski, Tadeusz, Niżański, Wojciech, Kokocińska, Agata, Skwark, Marcin J, Dzięcioł, Michał
Published in PloS one (02.02.2023)
Published in PloS one (02.02.2023)
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Journal Article
Early computational detection of potential high-risk SARS-CoV-2 variants
Beguir, Karim, Skwark, Marcin J., Fu, Yunguan, Pierrot, Thomas, Carranza, Nicolas Lopez, Laterre, Alexandre, Kadri, Ibtissem, Korched, Abir, Lowegard, Anna U., Lui, Bonny Gaby, Sänger, Bianca, Liu, Yunpeng, Poran, Asaf, Muik, Alexander, Şahin, Uğur
Published in Computers in biology and medicine (01.03.2023)
Published in Computers in biology and medicine (01.03.2023)
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Journal Article
Discoidin domain receptor 1 kinase activity is required for regulating collagen IV synthesis
Borza, Corina M., Su, Yan, Tran, Truc-Linh, Yu, Ling, Steyns, Nick, Temple, Kayla J., Skwark, Marcin J., Meiler, Jens, Lindsley, Craig W., Hicks, Brennan R., Leitinger, Birgit, Zent, Roy, Pozzi, Ambra
Published in Matrix biology (01.01.2017)
Published in Matrix biology (01.01.2017)
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Journal Article
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation
Sillitoe, Ian, Andreeva, Antonina, Blundell, Tom L, Buchan, Daniel W A, Finn, Robert D, Gough, Julian, Jones, David, Kelley, Lawrence A, Paysan-Lafosse, Typhaine, Lam, Su Datt, Murzin, Alexey G, Pandurangan, Arun Prasad, Salazar, Gustavo A, Skwark, Marcin J, Sternberg, Michael J E, Velankar, Sameer, Orengo, Christine
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus
Skwark, Marcin J, Torres, Pedro H M, Copoiu, Liviu, Bannerman, Bridget, Floto, R Andres, Blundell, Tom L
Published in Database : the journal of biological databases and curation (2019)
Published in Database : the journal of biological databases and curation (2019)
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Journal Article