GenVisR: Genomic Visualizations in R
Skidmore, Zachary L, Wagner, Alex H, Lesurf, Robert, Campbell, Katie M, Kunisaki, Jason, Griffith, Obi L, Griffith, Malachi
Published in Bioinformatics (Oxford, England) (01.10.2016)
Published in Bioinformatics (Oxford, England) (01.10.2016)
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Journal Article
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer
Cotto, Kelsy C, Feng, Yang-Yang, Ramu, Avinash, Richters, Megan, Freshour, Sharon L, Skidmore, Zachary L, Xia, Huiming, McMichael, Joshua F, Kunisaki, Jason, Campbell, Katie M, Chen, Timothy Hung-Po, Rozycki, Emily B, Adkins, Douglas, Devarakonda, Siddhartha, Sankararaman, Sumithra, Lin, Yiing, Chapman, William C, Maher, Christopher A, Arora, Vivek, Dunn, Gavin P, Uppaluri, Ravindra, Govindan, Ramaswamy, Griffith, Obi L, Griffith, Malachi
Published in Nature communications (22.03.2023)
Published in Nature communications (22.03.2023)
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Journal Article
Unraveling the chaotic genomic landscape of primary and metastatic canine appendicular osteosarcoma with current sequencing technologies and bioinformatic approaches
Chu, Shirley, Skidmore, Zachary L, Kunisaki, Jason, Walker, Jason R, Griffith, Malachi, Griffith, Obi L, Bryan, Jeffrey N
Published in PloS one (08.02.2021)
Published in PloS one (08.02.2021)
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Journal Article
Yap1 Mediates Trametinib Resistance in Head and Neck Squamous Cell Carcinomas
Mudianto, Tenny, Campbell, Katie M, Webb, Jason, Zolkind, Paul, Skidmore, Zachary L, Riley, Rachel, Barnell, Erica K, Ozgenc, Ibrahim, Giri, Tusar, Dunn, Gavin P, Adkins, Douglas R, Griffith, Malachi, Egloff, Ann Marie, Griffith, Obi L, Uppaluri, Ravindra
Published in Clinical cancer research (15.04.2021)
Published in Clinical cancer research (15.04.2021)
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Journal Article
Personalized ctDNA micro-panels can monitor and predict clinical outcomes for patients with triple-negative breast cancer
Barnell, Erica K, Fisk, Bryan, Skidmore, Zachary L, Cotto, Kelsy C, Basu, Anamika, Anand, Aparna, Richters, Megan M, Luo, Jingqin, Fronick, Catrina, Anurag, Meenakshi, Fulton, Robert, Ellis, Matthew J, Griffith, Obi L, Griffith, Malachi, Ademuyiwa, Foluso O
Published in Scientific reports (22.10.2022)
Published in Scientific reports (22.10.2022)
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Journal Article
Genomic landscape and gene expression profiles of feline oral squamous cell carcinoma
Rodney, Alana R, Skidmore, Zachary L, Grenier, Jennifer K, Griffith, Obi L, Miller, Andrew D, Chu, Shirley, Ahmed, Faraz, Bryan, Jeffrey N, Peralta, Santiago, Warren, Wesley C
Published in Frontiers in veterinary science (17.05.2023)
Published in Frontiers in veterinary science (17.05.2023)
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Journal Article
Endothelial cells are a key target of IFN-g during response to combined PD-1/CTLA-4 ICB treatment in a mouse model of bladder cancer
Freshour, Sharon L., Chen, Timothy H.-P., Fisk, Bryan, Shen, Haolin, Mosior, Matthew, Skidmore, Zachary L., Fronick, Catrina, Bolzenius, Jennifer K., Griffith, Obi L., Arora, Vivek K., Griffith, Malachi
Published in iScience (20.10.2023)
Published in iScience (20.10.2023)
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Journal Article
Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer
Griffith, Obi L, Spies, Nicholas C, Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L, Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E, Davies, Sherri, Kavuri, Shyam M, Chang, Eric C, Magrini, Vincent, Larson, David E, Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K, Nielsen, Torsten O, Mardis, Elaine R, Ellis, Matthew J
Published in Nature communications (14.11.2018)
Published in Nature communications (14.11.2018)
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Journal Article
Integrative genomic analysis reveals low T-cell infiltration as the primary feature of tobacco use in HPV-positive oropharyngeal cancer
Wahle, Benjamin M., Zolkind, Paul, Ramirez, Ricardo J., Skidmore, Zachary L., Anderson, Sydney R., Mazul, Angela, Hayes, D. Neil, Sandulache, Vlad C., Thorstad, Wade L., Adkins, Douglas, Griffith, Obi L., Griffith, Malachi, Zevallos, Jose P.
Published in iScience (20.05.2022)
Published in iScience (20.05.2022)
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Journal Article
A case of acute myeloid leukemia with promyelocytic features characterized by expression of a novel RARG-CPSF6 fusion
Miller, Christopher A., Tricarico, Christopher, Skidmore, Zachary L., Uy, Geoffrey L., Lee, Yi-Shan, Hassan, Anjum, O'Laughlin, Michelle D., Schmidt, Heather, Tian, Ling, Duncavage, Eric J., Griffith, Malachi, Griffith, Obi L., Welch, John S., Wartman, Lukas D.
Published in Blood advances (12.06.2018)
Published in Blood advances (12.06.2018)
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Journal Article
DGIdb 2.0: mining clinically relevant drug-gene interactions
Wagner, Alex H, Coffman, Adam C, Ainscough, Benjamin J, Spies, Nicholas C, Skidmore, Zachary L, Campbell, Katie M, Krysiak, Kilannin, Pan, Deng, McMichael, Joshua F, Eldred, James M, Walker, Jason R, Wilson, Richard K, Mardis, Elaine R, Griffith, Malachi, Griffith, Obi L
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
Rapid progression of adult T-cell leukemia/lymphoma as tumor-infiltrating Tregs after PD-1 blockade
Rauch, Daniel A., Conlon, Kevin C., Janakiram, Murali, Brammer, Jonathan E., Harding, John C., Ye, B.Hilda, Zang, Xingxing, Ren, Xiaoxin, Olson, Sydney, Cheng, Xiaogang, Miljkovic, Milos D., Sundaramoorthi, Hemalatha, Joseph, Ancy, Skidmore, Zachary L., Griffith, Obi, Griffith, Malachi, Waldmann, Thomas A., Ratner, Lee
Published in Blood (24.10.2019)
Published in Blood (24.10.2019)
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Journal Article
NeoPalAna: Neoadjuvant Palbociclib, a Cyclin-Dependent Kinase 4/6 Inhibitor, and Anastrozole for Clinical Stage 2 or 3 Estrogen Receptor-Positive Breast Cancer
Ma, Cynthia X, Gao, Feng, Luo, Jingqin, Northfelt, Donald W, Goetz, Matthew, Forero, Andres, Hoog, Jeremy, Naughton, Michael, Ademuyiwa, Foluso, Suresh, Rama, Anderson, Karen S, Margenthaler, Julie, Aft, Rebecca, Hobday, Timothy, Moynihan, Timothy, Gillanders, William, Cyr, Amy, Eberlein, Timothy J, Hieken, Tina, Krontiras, Helen, Guo, Zhanfang, Lee, Michelle V, Spies, Nicholas C, Skidmore, Zachary L, Griffith, Obi L, Griffith, Malachi, Thomas, Shana, Bumb, Caroline, Vij, Kiran, Bartlett, Cynthia Huang, Koehler, Maria, Al-Kateb, Hussam, Sanati, Souzan, Ellis, Matthew J
Published in Clinical cancer research (01.08.2017)
Published in Clinical cancer research (01.08.2017)
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Journal Article
Recurrent WNT pathway alterations are frequent in relapsed small cell lung cancer
Wagner, Alex H, Devarakonda, Siddhartha, Skidmore, Zachary L, Krysiak, Kilannin, Ramu, Avinash, Trani, Lee, Kunisaki, Jason, Masood, Ashiq, Waqar, Saiama N, Spies, Nicholas C, Morgensztern, Daniel, Waligorski, Jason, Ponce, Jennifer, Fulton, Robert S, Maggi, Jr, Leonard B, Weber, Jason D, Watson, Mark A, O'Conor, Christopher J, Ritter, Jon H, Olsen, Rachelle R, Cheng, Haixia, Mukhopadhyay, Anandaroop, Can, Ismail, Cessna, Melissa H, Oliver, Trudy G, Mardis, Elaine R, Wilson, Richard K, Griffith, Malachi, Griffith, Obi L, Govindan, Ramaswamy
Published in Nature communications (17.09.2018)
Published in Nature communications (17.09.2018)
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Journal Article
A Phase I Trial of BKM120 (Buparlisib) in Combination with Fulvestrant in Postmenopausal Women with Estrogen Receptor-Positive Metastatic Breast Cancer
Ma, Cynthia X, Luo, Jingqin, Naughton, Michael, Ademuyiwa, Foluso, Suresh, Rama, Griffith, Malachi, Griffith, Obi L, Skidmore, Zachary L, Spies, Nicholas C, Ramu, Avinash, Trani, Lee, Pluard, Timothy, Nagaraj, Gayathri, Thomas, Shana, Guo, Zhanfang, Hoog, Jeremy, Han, Jing, Mardis, Elaine, Lockhart, Craig, Ellis, Matthew J
Published in Clinical cancer research (01.04.2016)
Published in Clinical cancer research (01.04.2016)
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Journal Article
The prognostic effects of somatic mutations in ER-positive breast cancer
Griffith, Obi L, Spies, Nicholas C, Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L, Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E, Davies, Sherri, Kavuri, Shyam M, Chang, Eric C, Magrini, Vincent, Larson, David E, Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K, Nielsen, Torsten O, Mardis, Elaine R, Ellis, Matthew J
Published in Nature communications (04.09.2018)
Published in Nature communications (04.09.2018)
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Journal Article
Immunological ignorance is an enabling feature of the oligo-clonal T cell response to melanoma neoantigens
Linette, Gerald P., Becker-Hapak, Michelle, Skidmore, Zachary L., Baroja, Miren Lorea, Xu, Chong, Hundal, Jasreet, Spencer, David H., Fu, Weixuan, Cummins, Casey, Robnett, Maya, Kaabinejadian, Saghar, Hildebrand, William H., Magrini, Vincent, Demeter, Ryan, Krupnick, Alexander S., Griffith, Obi L., Griffith, Malachi, Mardis, Elaine R., Carreno, Beatriz M.
Published in Proceedings of the National Academy of Sciences - PNAS (19.11.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (19.11.2019)
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Journal Article
A virome sequencing approach to feline oral squamous cell carcinoma to evaluate viral causative factors
Chu, Shirley, Wylie, Todd N., Wylie, Kristine M., Johnson, Gayle C., Skidmore, Zachary L., Fleer, Maren, Griffith, Obi L., Bryan, Jeffrey N.
Published in Veterinary microbiology (01.01.2020)
Published in Veterinary microbiology (01.01.2020)
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Journal Article
Phase 1/dose expansion trial of brentuximab vedotin and lenalidomide in relapsed or refractory diffuse large B-cell lymphoma
Ward, Jeffrey P., Berrien-Elliott, Melissa M., Gomez, Felicia, Luo, Jingqin, Becker-Hapak, Michelle, Cashen, Amanda F., Wagner-Johnston, Nina D., Maddocks, Kami, Mosior, Matthew, Foster, Mark, Krysiak, Kilannin, Schmidt, Alina, Skidmore, Zachary L., Desai, Sweta, Watkins, Marcus P., Fischer, Anne, Griffith, Malachi, Griffith, Obi L., Fehniger, Todd A., Bartlett, Nancy L.
Published in Blood (31.03.2022)
Published in Blood (31.03.2022)
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Journal Article
Characterization of the Genomic and Immunologic Diversity of Malignant Brain Tumors through Multisector Analysis
Schaettler, Maximilian O, Richters, Megan M, Wang, Anthony Z, Skidmore, Zachary L, Fisk, Bryan, Miller, Katherine E, Vickery, Tammi L, Kim, Albert H, Chicoine, Michael R, Osbun, Joshua W, Leuthardt, Eric C, Dowling, Joshua L, Zipfel, Gregory J, Dacey, Ralph G, Lu, Hsiang-Chih, Johanns, Tanner M, Griffith, Obi L, Mardis, Elaine R, Griffith, Malachi, Dunn, Gavin P
Published in Cancer discovery (01.01.2022)
Published in Cancer discovery (01.01.2022)
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