Metabolic engineering of the oleaginous yeast Rhodosporidium toruloides IFO0880 for lipid overproduction during high-density fermentation
Zhang, Shuyan, Ito, Masakazu, Skerker, Jeffrey M., Arkin, Adam P., Rao, Christopher V.
Published in Applied microbiology and biotechnology (01.11.2016)
Published in Applied microbiology and biotechnology (01.11.2016)
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Journal Article
Engineering Rhodosporidium toruloides for increased lipid production
Zhang, Shuyan, Skerker, Jeffrey M., Rutter, Charles D., Maurer, Matthew J., Arkin, Adam P., Rao, Christopher V.
Published in Biotechnology and bioengineering (01.05.2016)
Published in Biotechnology and bioengineering (01.05.2016)
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Journal Article
Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae
Kim, Soo Rin, Skerker, Jeffrey M, Kang, Wei, Lesmana, Anastashia, Wei, Na, Arkin, Adam P, Jin, Yong-Su
Published in PloS one (26.02.2013)
Published in PloS one (26.02.2013)
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Journal Article
Adaptive Mutations that Prevent Crosstalk Enable the Expansion of Paralogous Signaling Protein Families
Capra, Emily J., Perchuk, Barrett S., Skerker, Jeffrey M., Laub, Michael T.
Published in Cell (06.07.2012)
Published in Cell (06.07.2012)
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Journal Article
Selection of chromosomal DNA libraries using a multiplex CRISPR system
Ryan, Owen W, Skerker, Jeffrey M, Maurer, Matthew J, Li, Xin, Tsai, Jordan C, Poddar, Snigdha, Lee, Michael E, DeLoache, Will, Dueber, John E, Arkin, Adam P, Cate, Jamie H D
Published in eLife (19.08.2014)
Published in eLife (19.08.2014)
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Journal Article
Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides
Coradetti, Samuel T, Pinel, Dominic, Geiselman, Gina M, Ito, Masakazu, Mondo, Stephen J, Reilly, Morgann C, Cheng, Ya-Fang, Bauer, Stefan, Grigoriev, Igor V, Gladden, John M, Simmons, Blake A, Brem, Rachel B, Arkin, Adam P, Skerker, Jeffrey M
Published in eLife (09.03.2018)
Published in eLife (09.03.2018)
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Journal Article
Monoterpene production by the carotenogenic yeast Rhodosporidium toruloides
Zhuang, Xun, Kilian, Oliver, Monroe, Eric, Ito, Masakazu, Tran-Gymfi, Mary Bao, Liu, Fang, Davis, Ryan W, Mirsiaghi, Mona, Sundstrom, Eric, Pray, Todd, Skerker, Jeffrey M, George, Anthe, Gladden, John M
Published in Microbial cell factories (18.03.2019)
Published in Microbial cell factories (18.03.2019)
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Journal Article
The Frequency of Sex: Population Genomics Reveals Differences in Recombination and Population Structure of the Aflatoxin-Producing Fungus Aspergillus flavus
Drott, Milton T, Satterlee, Tatum R, Skerker, Jeffrey M, Pfannenstiel, Brandon T, Glass, N Louise, Keller, Nancy P, Milgroom, Michael G
Published in mBio (14.07.2020)
Published in mBio (14.07.2020)
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Journal Article
Engineering Kluyveromyces marxianus as a Robust Synthetic Biology Platform Host
Cernak, Paul, Estrela, Raissa, Poddar, Snigdha, Skerker, Jeffrey M, Cheng, Ya-Fang, Carlson, Annika K, Chen, Berling, Glynn, Victoria M, Furlan, Monique, Ryan, Owen W, Donnelly, Marie K, Arkin, Adam P, Taylor, John W, Cate, Jamie H D
Published in mBio (25.09.2018)
Published in mBio (25.09.2018)
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Journal Article
A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides
Nora, Luísa Czamanski, Wehrs, Maren, Kim, Joonhoon, Cheng, Jan-Fang, Tarver, Angela, Simmons, Blake A, Magnuson, Jon, Harmon-Smith, Miranda, Silva-Rocha, Rafael, Gladden, John M, Mukhopadhyay, Aindrila, Skerker, Jeffrey M, Kirby, James
Published in Microbial cell factories (29.06.2019)
Published in Microbial cell factories (29.06.2019)
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Journal Article
Indirect and suboptimal control of gene expression is widespread in bacteria
Price, Morgan N, Deutschbauer, Adam M, Skerker, Jeffrey M, Wetmore, Kelly M, Ruths, Troy, Mar, Jordan S, Kuehl, Jennifer V, Shao, Wenjun, Arkin, Adam P
Published in Molecular systems biology (2013)
Published in Molecular systems biology (2013)
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Journal Article
Regulation of the bacterial cell cycle by an integrated genetic circuit
Laub, Michael T, Biondi, Emanuele G, Reisinger, Sarah J, Skerker, Jeffrey M, Arif, Muhammad, Perchuk, Barrett S, Ryan, Kathleen R
Published in Nature (14.12.2006)
Published in Nature (14.12.2006)
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Journal Article
Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides
Geiselman, Gina M, Zhuang, Xun, Kirby, James, Tran-Gyamfi, Mary B, Prahl, Jan-Philip, Sundstrom, Eric R, Gao, Yuqian, Munoz Munoz, Nathalie, Nicora, Carrie D, Clay, Derek M, Papa, Gabriella, Burnum-Johnson, Kristin E, Magnuson, Jon K, Tanjore, Deepti, Skerker, Jeffrey M, Gladden, John M
Published in Microbial cell factories (05.02.2020)
Published in Microbial cell factories (05.02.2020)
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Journal Article
Systematic dissection and trajectory-scanning mutagenesis of the molecular interface that ensures specificity of two-component signaling pathways
Capra, Emily J, Perchuk, Barrett S, Lubin, Emma A, Ashenberg, Orr, Skerker, Jeffrey M, Laub, Michael T
Published in PLoS genetics (01.11.2010)
Published in PLoS genetics (01.11.2010)
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Journal Article
Gene Amplification on Demand Accelerates Cellobiose Utilization in Engineered Saccharomyces cerevisiae
Oh, Eun Joong, Skerker, Jeffrey M, Kim, Soo Rin, Wei, Na, Turner, Timothy L, Maurer, Matthew J, Arkin, Adam P, Jin, Yong-Su
Published in Applied and environmental microbiology (15.06.2016)
Published in Applied and environmental microbiology (15.06.2016)
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Journal Article
Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357
Skerker, Jeffrey M, Pianalto, Kaila M, Mondo, Stephen J, Yang, Kunlong, Arkin, Adam P, Keller, Nancy P, Grigoriev, Igor V, Louise Glass, N Louise
Published in G3 : genes - genomes - genetics (07.08.2021)
Published in G3 : genes - genomes - genetics (07.08.2021)
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Journal Article
Direct Observation of Extension and Retraction of Type IV Pili
Skerker, Jeffrey M., Berg, Howard C.
Published in Proceedings of the National Academy of Sciences - PNAS (05.06.2001)
Published in Proceedings of the National Academy of Sciences - PNAS (05.06.2001)
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Journal Article
Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates
Skerker, Jeffrey M, Leon, Dacia, Price, Morgan N, Mar, Jordan S, Tarjan, Daniel R, Wetmore, Kelly M, Deutschbauer, Adam M, Baumohl, Jason K, Bauer, Stefan, Ibáñez, Ana B, Mitchell, Valerie D, Wu, Cindy H, Hu, Ping, Hazen, Terry, Arkin, Adam P
Published in Molecular systems biology (18.06.2013)
Published in Molecular systems biology (18.06.2013)
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Journal Article
Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides
Kim, Joonhoon, Coradetti, Samuel T, Kim, Young-Mo, Gao, Yuqian, Yaegashi, Junko, Zucker, Jeremy D, Munoz, Nathalie, Zink, Erika M, Burnum-Johnson, Kristin E, Baker, Scott E, Simmons, Blake A, Skerker, Jeffrey M, Gladden, John M, Magnuson, Jon K
Published in Frontiers in bioengineering and biotechnology (08.01.2021)
Published in Frontiers in bioengineering and biotechnology (08.01.2021)
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