PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria
Bayliss, Sion C, Thorpe, Harry A, Coyle, Nicola M, Sheppard, Samuel K, Feil, Edward J
Published in Gigascience (01.10.2019)
Published in Gigascience (01.10.2019)
Get full text
Journal Article
Genome evolution and the emergence of pathogenicity in avian Escherichia coli
Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C, Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K, Yahara, Koji, Murray, Susan, Wilkinson, Thomas S, Williams, Lisa K, Hitchings, Matthew D, Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J, Jolley, Keith A, Williams, Nicola J, Corander, Jukka, Sheppard, Samuel K
Published in Nature communications (03.02.2021)
Published in Nature communications (03.02.2021)
Get full text
Journal Article
Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species
Thorpe, Harry A, Bayliss, Sion C, Hurst, Laurence D, Feil, Edward J
Published in Genetics (Austin) (01.05.2017)
Published in Genetics (Austin) (01.05.2017)
Get full text
Journal Article
WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread dissemination of a vanA-containing plasmid and acquisition of a heterogeneous accessory genome
Pinholt, Mette, Bayliss, Sion C, Gumpert, Heidi, Worning, Peder, Jensen, Veronika V S, Pedersen, Michael, Feil, Edward J, Westh, Henrik
Published in Journal of antimicrobial chemotherapy (01.07.2019)
Published in Journal of antimicrobial chemotherapy (01.07.2019)
Get full text
Journal Article
Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages
Calland, Jessica K, Pascoe, Ben, Bayliss, Sion C, Mourkas, Evangelos, Berthenet, Elvire, Thorpe, Harry A, Hitchings, Matthew D, Feil, Edward J, Corander, Jukka, Blaser, Martin J, Falush, Daniel, Sheppard, Samuel K
Published in PLoS genetics (28.09.2021)
Published in PLoS genetics (28.09.2021)
Get full text
Journal Article
Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease
Mourkas, Evangelos, Florez‐Cuadrado, Diego, Pascoe, Ben, Calland, Jessica K., Bayliss, Sion C., Mageiros, Leonardos, Méric, Guillaume, Hitchings, Matthew D., Quesada, Alberto, Porrero, Concepción, Ugarte‐Ruiz, María, Gutiérrez‐Fernández, José, Domínguez, Lucas, Sheppard, Samuel K.
Published in Environmental microbiology (01.12.2019)
Published in Environmental microbiology (01.12.2019)
Get full text
Journal Article
Real time monitoring of Aeromonas salmonicida evolution in response to successive antibiotic therapies in a commercial fish farm
Du, Xiaochen, Bayliss, Sion C., Feil, Edward J., Liu, Ying, Wang, Chao, Zhang, Gang, Zhou, Dongsheng, Wei, Dawei, Tang, Na, Leclercq, Sébastien O., Feng, Jie
Published in Environmental microbiology (01.03.2019)
Published in Environmental microbiology (01.03.2019)
Get full text
Journal Article
Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni
Mourkas, Evangelos, Taylor, Aidan J., Meric, Guillaume, Bayliss, Sion C., Pascoe, Ben, Mageiros, Leonardos, Calland, Jessica K., Hitchings, Matthew D., Ridley, Anne, Vidal, Ana, Forbes, Ken J., Strachan, Norval J. C., Parker, Craig T., Parkhill, Julian, Jolley, Keith A., Cody, Alison J., Maiden, Martin C. J., Kelly, David J., Sheppard, Samuel K.
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2020)
Get full text
Journal Article
Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter
Mourkas, Evangelos, Yahara, Koji, Bayliss, Sion C, Calland, Jessica K, Johansson, Håkan, Mageiros, Leonardos, Muñoz-Ramirez, Zilia Y, Futcher, Grant, Méric, Guillaume, Hitchings, Matthew D, Sandoval-Motta, Santiago, Torres, Javier, Jolley, Keith A, Maiden, Martin C J, Ellström, Patrik, Waldenström, Jonas, Pascoe, Ben, Sheppard, Samuel K
Published in eLife (22.02.2022)
Published in eLife (22.02.2022)
Get full text
Journal Article
Low- and high-load resistance training exercise to volitional fatigue generate exercise-induced appetite suppression
McCarthy, Seth F., Bornath, Derek P.D., Grisebach, Daniel, Tucker, Jessica A.L., Jarosz, Claudia, Ormond, Sion C., Medeiros, Philip J., Hazell, Tom J.
Published in Appetite (01.05.2024)
Published in Appetite (01.05.2024)
Get full text
Journal Article
The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens
Bayliss, Sion C, Verner-Jeffreys, David W, Bartie, Kerry L, Aanensen, David M, Sheppard, Samuel K, Adams, Alexandra, Feil, Edward J
Published in Frontiers in microbiology (03.02.2017)
Published in Frontiers in microbiology (03.02.2017)
Get full text
Journal Article
Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon
Pascoe, Ben, Schiaffino, Francesca, Murray, Susan, Méric, Guillaume, Bayliss, Sion C, Hitchings, Matthew D, Mourkas, Evangelos, Calland, Jessica K, Burga, Rosa, Yori, Pablo Peñataro, Jolley, Keith A, Cooper, Kerry K, Parker, Craig T, Olortegui, Maribel Paredes, Kosek, Margaret N, Sheppard, Samuel K
Published in PLoS neglected tropical diseases (01.08.2020)
Published in PLoS neglected tropical diseases (01.08.2020)
Get full text
Journal Article
Gene Composition as a Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella pneumoniae
Comandatore, Francesco, Sassera, Davide, Bayliss, Sion C, Scaltriti, Erika, Gaiarsa, Stefano, Cao, Xiaoli, Gales, Ana C, Saito, Ryoichi, Pongolini, Stefano, Brisse, Sylvain, Feil, Edward J, Bandi, Claudio
Published in Genome biology and evolution (01.11.2019)
Published in Genome biology and evolution (01.11.2019)
Get full text
Journal Article
Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria
Thorpe, Harry A, Bayliss, Sion C, Sheppard, Samuel K, Feil, Edward J
Published in Gigascience (01.04.2018)
Published in Gigascience (01.04.2018)
Get full text
Journal Article
Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli
Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C, Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K, Yahara, Koji, Murray, Susan, Wilkinson, Thomas S, Williams, Lisa K, Hitchings, Matthew D, Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J, Jolley, Keith A, Williams, Nicola J, Corander, Jukka, Sheppard, Samuel K
Published in Nature communications (22.03.2021)
Published in Nature communications (22.03.2021)
Get full text
Journal Article
A Hopeful Sea-Monster: A Very Large Homologous Recombination Event Impacting the Core Genome of the Marine Pathogen Vibrio anguillarum
Coyle, Nicola M., Bartie, Kerry L., Bayliss, Sion C., Bekaert, Michaël, Adams, Alexandra, McMillan, Stuart, Verner-Jeffreys, David W., Desbois, Andrew P., Feil, Edward J.
Published in Frontiers in microbiology (29.06.2020)
Published in Frontiers in microbiology (29.06.2020)
Get full text
Journal Article