Integration of multiomics data shows down regulation of mismatch repair and tubulin pathways in triple-negative chemotherapy-resistant breast tumors
Tang, Xiaojia, Thompson, Kevin J, Kalari, Krishna R, Sinnwell, Jason P, Suman, Vera J, Vedell, Peter T, McLaughlin, Sarah A, Northfelt, Donald W, Aspitia, Alvaro Moreno, Gray, Richard J, Carter, Jodi M, Weinshilboum, Richard, Wang, Liewei, Boughey, Judy C, Goetz, Matthew P
Published in Breast cancer research : BCR (24.05.2023)
Published in Breast cancer research : BCR (24.05.2023)
Get full text
Journal Article
Impact of variant-level batch effects on identification of genetic risk factors in large sequencing studies
Wickland, Daniel P, Ren, Yingxue, Sinnwell, Jason P, Reddy, Joseph S, Pottier, Cyril, Sarangi, Vivekananda, Carrasquillo, Minerva M, Ross, Owen A, Younkin, Steven G, Ertekin-Taner, Nilüfer, Rademakers, Rosa, Hudson, Matthew E, Mainzer, Liudmila Sergeevna, Biernacka, Joanna M, Asmann, Yan W
Published in PloS one (16.04.2021)
Published in PloS one (16.04.2021)
Get full text
Journal Article
Identification of missing variants by combining multiple analytic pipelines
Ren, Yingxue, Reddy, Joseph S, Pottier, Cyril, Sarangi, Vivekananda, Tian, Shulan, Sinnwell, Jason P, McDonnell, Shannon K, Biernacka, Joanna M, Carrasquillo, Minerva M, Ross, Owen A, Ertekin-Taner, Nilüfer, Rademakers, Rosa, Hudson, Matthew, Mainzer, Liudmila Sergeevna, Asmann, Yan W
Published in BMC bioinformatics (16.04.2018)
Published in BMC bioinformatics (16.04.2018)
Get full text
Journal Article
Deep sequencing across germline genome-wide association study signals relating to breast cancer events in women receiving aromatase inhibitors for adjuvant therapy of early breast cancer
Ingle, James N, Kalari, Krishna R, Momozawa, Yukihide, Kubo, Michiaki, Furukawa, Yoichi, Shepherd, Lois E, Ellis, Matthew J, Goss, Paul E, Barman, Poulami, Carlson, Erin E, Sinnwell, Jason P, Tang, Xiaojia, Goetz, Matthew P, Chen, Bingshu E, Cairns, Junmei, Weinshilboum, Richard M, Wang, Liewei
Published in Pharmacogenetics and genomics (01.10.2019)
Published in Pharmacogenetics and genomics (01.10.2019)
Get more information
Journal Article
Automated mitotic spindle hotspot counts are highly associated with clinical outcomes in systemically untreated early-stage triple-negative breast cancer
Leon-Ferre, Roberto A., Carter, Jodi M., Zahrieh, David, Sinnwell, Jason P., Salgado, Roberto, Suman, Vera J., Hillman, David W., Boughey, Judy C., Kalari, Krishna R., Couch, Fergus J., Ingle, James N., Balkenhol, Maschenka, Ciompi, Francesco, van der Laak, Jeroen, Goetz, Matthew P.
Published in NPJ breast cancer (29.03.2024)
Published in NPJ breast cancer (29.03.2024)
Get full text
Journal Article
Determining the frequency of pathogenic germline variants from exome sequencing in patients with castrate-resistant prostate cancer
Hart, Steven N, Ellingson, Marissa S, Schahl, Kim, Vedell, Peter T, Carlson, Rachel E, Sinnwell, Jason P, Barman, Poulami, Sicotte, Hugues, Eckel-Passow, Jeanette E, Wang, Liguo, Kalari, Krishna R, Qin, Rui, Kruisselbrink, Teresa M, Jimenez, Rafael E, Bryce, Alan H, Tan, Winston, Weinshilboum, Richard, Wang, Liewei, Kohli, Manish
Published in BMJ open (15.04.2016)
Published in BMJ open (15.04.2016)
Get full text
Journal Article
Utility of ALK-1 protein expression and ALK rearrangements in distinguishing inflammatory myofibroblastic tumor from malignant spindle cell lesions of the urinary bladder
Sukov, William R, Cheville, John C, Carlson, Austin W, Shearer, Brandon M, Piatigorsky, Eli J, Grogg, Karen L, Sebo, Thomas J, Sinnwell, Jason P, Ketterling, Rhett P
Published in Modern pathology (01.05.2007)
Published in Modern pathology (01.05.2007)
Get full text
Journal Article
CCND1 rearrangements and cyclin D1 overexpression in renal oncocytomas: frequency, clinicopathologic features, and utility in differentiation from chromophobe renal cell carcinoma
Sukov, William R., MD, Ketterling, Rhett P., MD, Lager, Donna J., MD, Carlson, Austin W., BS, Sinnwell, Jason P., MS, Chow, George K., MD, Jenkins, Robert B., MD, PhD, Cheville, John C., MD
Published in Human pathology (01.09.2009)
Published in Human pathology (01.09.2009)
Get full text
Journal Article
Statistical Methods for Testing Genetic Pleiotropy
Schaid, Daniel J, Tong, Xingwei, Larrabee, Beth, Kennedy, Richard B, Poland, Gregory A, Sinnwell, Jason P
Published in Genetics (Austin) (01.10.2016)
Published in Genetics (Austin) (01.10.2016)
Get full text
Journal Article
A Prospective Correlation of Tissue Histopathology With Nucleic Acid Yield in Metastatic Castration-Resistant Prostate Cancer Biopsy Specimens
Jimenez, Rafael E., Atwell, Thomas D., Sicotte, Hughes, Eckloff, Bruce, Wang, Liguo, Barman, Poulami, Sinnwell, Jason P., Eiken, Patrick W., McMenomy, Brendan P., Tan, Winston, Wang, Liewei, Carlson, Rachel E., Kohli, Manish
Published in Mayo Clinic proceedings. Innovations, quality & outcomes (01.03.2019)
Published in Mayo Clinic proceedings. Innovations, quality & outcomes (01.03.2019)
Get full text
Journal Article
Penalized mediation models for multivariate data
Schaid, Daniel J., Dikilitas, Ozan, Sinnwell, Jason P., Kullo, Iftikhar J.
Published in Genetic epidemiology (01.02.2022)
Published in Genetic epidemiology (01.02.2022)
Get full text
Journal Article
Isochromosome 12p and polysomy 12 in primary central nervous system germ cell tumors: frequency and association with clinicopathologic features
Sukov, William R., MD, Cheville, John C., MD, Giannini, Caterina, MD, Carlson, Austin W., BS, Shearer, Brandon M., BA, Sinnwell, Jason P., MS, Ketterling, Rhett P., MD
Published in Human pathology (01.02.2010)
Published in Human pathology (01.02.2010)
Get full text
Journal Article
Penalized variance components for association of multiple genes with traits
Schaid, Daniel J., Sinnwell, Jason P., Larson, Nicholas B., Chen, Jun
Published in Genetic epidemiology (01.10.2020)
Published in Genetic epidemiology (01.10.2020)
Get full text
Journal Article
Biomarkers for Predicting Abiraterone Treatment Outcome and Selecting Alternative Therapies in Castration‐Resistant Prostate Cancer
Qin, Sisi, Gao, Huanyao, Kim, Wootae, Zhang, Huan, Gu, Yayun, Kalari, Krishna R., Sinnwell, Jason P., Scholz, Jodi A., Xie, Fang, Yin, Ping, Yu, Jia, Qin, Bo, Zhuang, Yongxian, Wei, Lixuan, Tan, Winston, Bryce, Alan H., Weinshilboum, Richard M., Wang, Liewei
Published in Clinical pharmacology and therapeutics (01.06.2022)
Published in Clinical pharmacology and therapeutics (01.06.2022)
Get full text
Journal Article
Molecular Profile Changes in Patients with Castrate-Resistant Prostate Cancer Pre- and Post-Abiraterone/Prednisone Treatment
Sicotte, Hugues, Kalari, Krishna R, Qin, Sisi, Dehm, Scott M, Bhargava, Vipul, Gormley, Michael, Tan, Winston, Sinnwell, Jason P, Hillman, David W, Li, Ying, Vedell, Peter T, Carlson, Rachel E, Bryce, Alan H, Jimenez, Raphael E, Weinshilboum, Richard M, Kohli, Manish, Wang, Liewei
Published in Molecular cancer research (02.12.2022)
Published in Molecular cancer research (02.12.2022)
Get full text
Journal Article
Multivariate generalized linear model for genetic pleiotropy
Schaid, Daniel J, Tong, Xingwei, Batzler, Anthony, Sinnwell, Jason P, Qing, Jiang, Biernacka, Joanna M
Published in Biostatistics (Oxford, England) (01.01.2019)
Published in Biostatistics (Oxford, England) (01.01.2019)
Get full text
Journal Article