Big data in basic and translational cancer research
Jiang, Peng, Sinha, Sanju, Aldape, Kenneth, Hannenhalli, Sridhar, Sahinalp, Cenk, Ruppin, Eytan
Published in Nature reviews. Cancer (01.11.2022)
Published in Nature reviews. Cancer (01.11.2022)
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Journal Article
A systematic genome-wide mapping of oncogenic mutation selection during CRISPR-Cas9 genome editing
Sinha, Sanju, Barbosa, Karina, Cheng, Kuoyuan, Leiserson, Mark D M, Jain, Prashant, Deshpande, Anagha, Wilson, 3rd, David M, Ryan, Bríd M, Luo, Ji, Ronai, Ze'ev A, Lee, Joo Sang, Deshpande, Aniruddha J, Ruppin, Eytan
Published in Nature communications (11.11.2021)
Published in Nature communications (11.11.2021)
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Journal Article
The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective
Ahmadi, Saba, Sukprasert, Pattara, Vegesna, Rahulsimham, Sinha, Sanju, Schischlik, Fiorella, Artzi, Natalie, Khuller, Samir, Schäffer, Alejandro A, Ruppin, Eytan
Published in Nature communications (25.03.2022)
Published in Nature communications (25.03.2022)
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Journal Article
Identification of drugs associated with reduced severity of COVID-19 - a case-control study in a large population
Israel, Ariel, Schäffer, Alejandro A, Cicurel, Assi, Cheng, Kuoyuan, Sinha, Sanju, Schiff, Eyal, Feldhamer, Ilan, Tal, Ameer, Lavie, Gil, Ruppin, Eytan
Published in eLife (27.07.2021)
Published in eLife (27.07.2021)
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Journal Article
A Division of Labor between YAP and TAZ in Non-Small Cell Lung Cancer
Shreberk-Shaked, Michal, Dassa, Bareket, Sinha, Sanju, Di Agostino, Silvia, Azuri, Ido, Mukherjee, Saptaparna, Aylon, Yael, Blandino, Giovanni, Ruppin, Eytan, Oren, Moshe
Published in Cancer research (Chicago, Ill.) (01.10.2020)
Published in Cancer research (Chicago, Ill.) (01.10.2020)
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Journal Article
A comprehensive map of alternative polyadenylation in African American and European American lung cancer patients
Zingone, Adriana, Sinha, Sanju, Ante, Michael, Nguyen, Cu, Daujotyte, Dalia, Bowman, Elise D, Sinha, Neelam, Mitchell, Khadijah A, Chen, Qingrong, Yan, Chunhua, Loher, Phillipe, Meerzaman, Daoud, Ruppin, Eytan, Ryan, Bríd M
Published in Nature communications (23.09.2021)
Published in Nature communications (23.09.2021)
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Journal Article
Recurrent PTPRT/JAK2 mutations in lung adenocarcinoma among African Americans
Mitchell, Khadijah A, Nichols, Noah, Tang, Wei, Walling, Jennifer, Stevenson, Holly, Pineda, Marbin, Stefanescu, Roxana, Edelman, Daniel C, Girvin, Andrew T, Zingone, Adriana, Sinha, Sanju, Bowman, Elise, Rossi, Emily L, Arauz, Rony F, Jack Zhu, Yuelin, Lack, Justin, Weingartner, Elizabeth, Waterfall, Joshua J, Pine, Sharon R, Simmons, John, Meltzer, Paul, Ryan, Bríd M
Published in Nature communications (16.12.2019)
Published in Nature communications (16.12.2019)
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Journal Article
Genome‐scale metabolic modeling reveals SARS‐CoV‐2‐induced metabolic changes and antiviral targets
Cheng, Kuoyuan, Martin‐Sancho, Laura, Pal, Lipika R, Pu, Yuan, Riva, Laura, Yin, Xin, Sinha, Sanju, Nair, Nishanth Ulhas, Chanda, Sumit K, Ruppin, Eytan
Published in Molecular systems biology (01.11.2021)
Published in Molecular systems biology (01.11.2021)
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Journal Article
Author Correction: A systematic genome-wide mapping of oncogenic mutation selection during CRISPR-Cas9 genome editing
Sinha, Sanju, Barbosa, Karina, Cheng, Kuoyuan, Leiserson, Mark D M, Jain, Prashant, Deshpande, Anagha, Wilson, 3rd, David M, Ryan, Bríd M, Luo, Ji, Ronai, Ze'ev A, Lee, Joo Sang, Deshpande, Aniruddha J, Ruppin, Eytan
Published in Nature communications (16.05.2022)
Published in Nature communications (16.05.2022)
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Journal Article
Membrane-Tethered Mucin 1 Is Stimulated by Interferon and Virus Infection in Multiple Cell Types and Inhibits Influenza A Virus Infection in Human Airway Epithelium
Iverson, Ethan, Griswold, Kira, Song, Daniel, Gagliardi, Talita B, Hamidzadeh, Kajal, Kesimer, Mehmet, Sinha, Sanju, Perry, Melissa, Duncan, Gregg A, Scull, Margaret A
Published in mBio (30.08.2022)
Published in mBio (30.08.2022)
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Journal Article
Author Correction: Recurrent PTPRT/JAK2 mutations in lung adenocarcinoma among African Americans
Mitchell, Khadijah A, Nichols, Noah, Tang, Wei, Walling, Jennifer, Stevenson, Holly, Pineda, Marbin, Stefanescu, Roxana, Edelman, Daniel C, Girvin, Andrew T, Zingone, Adriana, Sinha, Sanju, Bowman, Elise, Rossi, Emily L, Arauz, Rony F, Zhu, Yuelin Jack, Lack, Justin, Weingartner, Elizabeth, Waterfall, Joshua J, Pine, Sharon R, Simmons, John, Meltzer, Paul, Ryan, Bríd M
Published in Nature communications (30.01.2020)
Published in Nature communications (30.01.2020)
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Journal Article
Pan-Cancer Analysis of Patient Tumor Single-Cell Transcriptomes Identifies Promising Selective and Safe Chimeric Antigen Receptor Targets in Head and Neck Cancer
Madan, Sanna, Sinha, Sanju, Chang, Tiangen, Gutkind, J. Silvio, Cohen, Ezra E. W, Schäffer, Alejandro A, Ruppin, Eytan
Published in Cancers (01.10.2023)
Published in Cancers (01.10.2023)
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Journal Article
Sex Biases in Cancer and Autoimmune Disease Incidence Are Strongly Positively Correlated with Mitochondrial Gene Expression across Human Tissues
Crawford, David R, Sinha, Sanju, Nair, Nishanth Ulhas, Ryan, Bríd M, Barnholtz-Sloan, Jill S, Mount, Stephen M, Erez, Ayelet, Aldape, Kenneth, Castle, Philip E, Rajagopal, Padma S, Day, Chi-Ping, Schäffer, Alejandro A, Ruppin, Eytan
Published in Cancers (29.11.2022)
Published in Cancers (29.11.2022)
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Journal Article
MCP-1/CCR2 axis inhibition sensitizes the brain microenvironment against melanoma brain metastasis progression
Pozzi, Sabina, Scomparin, Anna, Ben-Shushan, Dikla, Yeini, Eilam, Ofek, Paula, Nahmad, Alessio D., Soffer, Shelly, Ionescu, Ariel, Ruggiero, Antonella, Barzel, Adi, Brem, Henry, Hyde, Thomas M., Barshack, Iris, Sinha, Sanju, Ruppin, Eytan, Weiss, Tomer, Madi, Asaf, Perlson, Eran, Slutsky, Inna, Florindo, Helena F., Satchi-Fainaro, Ronit
Published in JCI insight (08.09.2022)
Published in JCI insight (08.09.2022)
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Journal Article
Synthetic lethality-based prediction of anti-SARS-CoV-2 targets
Pal, Lipika R., Cheng, Kuoyuan, Nair, Nishanth Ulhas, Martin-Sancho, Laura, Sinha, Sanju, Pu, Yuan, Riva, Laura, Yin, Xin, Schischlik, Fiorella, Lee, Joo Sang, Chanda, Sumit K., Ruppin, Eytan
Published in iScience (20.05.2022)
Published in iScience (20.05.2022)
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Journal Article
Web Resource
Using single-cell transcriptomics to predict which tumors will respond to targeted therapy
Published in Nature cancer
(01.06.2024)
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Journal Article
Abstract 3115: Predicting in-depth mechanism of action of cancer drugs
Sinha, Sanju, Sinha, Neelam, Ruppin, Eytan
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Immune Determinants of the Association between Tumor Mutational Burden and Immunotherapy Response across Cancer Types
Sinha, Neelam, Sinha, Sanju, Valero, Cristina, Schäffer, Alejandro A, Aldape, Kenneth, Litchfield, Kevin, Chan, Timothy A, Morris, Luc G T, Ruppin, Eytan
Published in Cancer research (Chicago, Ill.) (06.06.2022)
Published in Cancer research (Chicago, Ill.) (06.06.2022)
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Journal Article
Abstract 2688: The landscape of precision cancer combination therapy: a single-cell perspective
Ahmadi, Saba, Sukprasert, Pattara, Vegesna, Rahulsimham, Sinha, Sanju, Artzi, Natalie, Khuller, Samir, Schäffer, Alejandro A., Ruppin, Eytan
Published in Cancer research (Chicago, Ill.) (01.07.2021)
Published in Cancer research (Chicago, Ill.) (01.07.2021)
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Journal Article