COPASI—a COmplex PAthway SImulator
Hoops, Stefan, Sahle, Sven, Gauges, Ralph, Lee, Christine, Pahle, Jürgen, Simus, Natalia, Singhal, Mudita, Xu, Liang, Mendes, Pedro, Kummer, Ursula
Published in Bioinformatics (15.12.2006)
Published in Bioinformatics (15.12.2006)
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Journal Article
Proteomic and phospho-proteomic profile of human platelets in basal, resting state: insights into integrin signaling
Qureshi, Amir H, Chaoji, Vineet, Maiguel, Dony, Faridi, Mohd Hafeez, Barth, Constantinos J, Salem, Saeed M, Singhal, Mudita, Stoub, Darren, Krastins, Bryan, Ogihara, Mitsunori, Zaki, Mohammed J, Gupta, Vineet
Published in PloS one (27.10.2009)
Published in PloS one (27.10.2009)
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Journal Article
Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress
Taylor, Ronald C, Acquaah-Mensah, George, Singhal, Mudita, Malhotra, Deepti, Biswal, Shyam
Published in PLoS computational biology (29.08.2008)
Published in PLoS computational biology (29.08.2008)
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Journal Article
Site-Specific Protein Adducts of 4-Hydroxy-2(E)-Nonenal in Human THP-1 Monocytic Cells: Protein Carbonylation Is Diminished by Ascorbic Acid
Chavez, Juan, Chung, Woon-Gye, Miranda, Cristobal L, Singhal, Mudita, Stevens, Jan F, Maier, Claudia S
Published in Chemical research in toxicology (18.01.2010)
Published in Chemical research in toxicology (18.01.2010)
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Journal Article
Machine learning based prediction for peptide drift times in ion mobility spectrometry
Shah, Anuj R., Agarwal, Khushbu, Baker, Erin S., Singhal, Mudita, Mayampurath, Anoop M., Ibrahim, Yehia M., Kangas, Lars J., Monroe, Matthew E., Zhao, Rui, Belov, Mikhail E., Anderson, Gordon A., Smith, Richard D.
Published in Bioinformatics (01.07.2010)
Published in Bioinformatics (01.07.2010)
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Journal Article
Benchmark study of automatic annotation of MALDI-TOF N-glycan profiles
Brito, Alejandro E., Kletter, Doron, Singhal, Mudita, Bern, Marshall
Published in Journal of proteomics (03.11.2015)
Published in Journal of proteomics (03.11.2015)
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Journal Article
Characterization of the Mouse Pancreatic Islet Proteome and Comparative Analysis with Other Mouse Tissues
Petyuk, Vladislav A, Qian, Wei-Jun, Hinault, Charlotte, Gritsenko, Marina A, Singhal, Mudita, Monroe, Matthew E, Camp, David G, Kulkarni, Rohit N, Smith, Richard D
Published in Journal of proteome research (01.08.2008)
Published in Journal of proteome research (01.08.2008)
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Journal Article
Separating the drivers from the driven: Integrative network and pathway approaches aid identification of disease biomarkers from high-throughput data
McDermott, Jason E, Costa, Michelle, Janszen, Derek, Singhal, Mudita, Tilton, Susan C
Published in Disease markers (01.01.2010)
Published in Disease markers (01.01.2010)
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Journal Article
Visual analysis of dynamic data streams
Chin, George, Singhal, Mudita, Nakamura, Grant, Gurumoorthi, Vidhya, Freeman-Cadoret, Natalie
Published in Information visualization (01.09.2009)
Published in Information visualization (01.09.2009)
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Journal Article
Separating the drivers from the driven: Integrative network and pathway approaches aid identification of disease biomarkers from high-throughput data
McDermott, Jason E, Costa, Michelle, Janszen, Derek, Singhal, Mudita, Tilton, Susan C
Published in Disease markers (01.01.2010)
Published in Disease markers (01.01.2010)
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Journal Article
PQuad—a visual analysis platform for proteomic data exploration of microbial organisms
Webb-Robertson, Bobbie-Jo M., Peterson, Elena S., Singhal, Mudita, Klicker, Kyle R., Oehmen, Christopher S., Adkins, Joshua N., Havre, Susan L.
Published in Bioinformatics (01.07.2007)
Published in Bioinformatics (01.07.2007)
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Journal Article