Colorectal Cancer Cells Enter a Diapause-like DTP State to Survive Chemotherapy
Rehman, Sumaiyah K., Haynes, Jennifer, Collignon, Evelyne, Brown, Kevin R., Wang, Yadong, Nixon, Allison M.L., Bruce, Jeffrey P., Wintersinger, Jeffrey A., Singh Mer, Arvind, Lo, Edwyn B.L., Leung, Cherry, Lima-Fernandes, Evelyne, Pedley, Nicholas M., Soares, Fraser, McGibbon, Sophie, He, Housheng Hansen, Pollet, Aaron, Pugh, Trevor J., Haibe-Kains, Benjamin, Morris, Quaid, Ramalho-Santos, Miguel, Goyal, Sidhartha, Moffat, Jason, O’Brien, Catherine A.
Published in Cell (07.01.2021)
Published in Cell (07.01.2021)
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Journal Article
Biological and therapeutic implications of a unique subtype of NPM1 mutated AML
Mer, Arvind Singh, Heath, Emily M, Madani Tonekaboni, Seyed Ali, Dogan-Artun, Nergiz, Nair, Sisira Kadambat, Murison, Alex, Garcia-Prat, Laura, Shlush, Liran, Hurren, Rose, Voisin, Veronique, Bader, Gary D, Nislow, Corey, Rantalainen, Mattias, Lehmann, Soren, Gower, Mark, Guidos, Cynthia J, Lupien, Mathieu, Dick, John E, Minden, Mark D, Schimmer, Aaron D, Haibe-Kains, Benjamin
Published in Nature communications (16.02.2021)
Published in Nature communications (16.02.2021)
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Journal Article
Organoid Cultures as Preclinical Models of Non-Small Cell Lung Cancer
Shi, Ruoshi, Radulovich, Nikolina, Ng, Christine, Liu, Ni, Notsuda, Hirotsugu, Cabanero, Michael, Martins-Filho, Sebastiao N, Raghavan, Vibha, Li, Quan, Mer, Arvind Singh, Rosen, Joshua C, Li, Ming, Wang, Yu-Hui, Tamblyn, Laura, Pham, Nhu-An, Haibe-Kains, Benjamin, Liu, Geoffrey, Moghal, Nadeem, Tsao, Ming-Sound
Published in Clinical cancer research (01.03.2020)
Published in Clinical cancer research (01.03.2020)
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Journal Article
Ontogeny and Vulnerabilities of Drug-Tolerant Persisters in HER2+ Breast Cancer
Chang, Chewei Anderson, Jen, Jayu, Jiang, Shaowen, Sayad, Azin, Mer, Arvind Singh, Brown, Kevin R, Nixon, Allison M L, Dhabaria, Avantika, Tang, Kwan Ho, Venet, David, Sotiriou, Christos, Deng, Jiehui, Wong, Kwok-Kin, Adams, Sylvia, Meyn, Peter, Heguy, Adriana, Skok, Jane A, Tsirigos, Aristotelis, Ueberheide, Beatrix, Moffat, Jason, Singh, Abhyudai, Haibe-Kains, Benjamin, Khodadadi-Jamayran, Alireza, Neel, Benjamin G
Published in Cancer discovery (01.04.2022)
Published in Cancer discovery (01.04.2022)
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Journal Article
Expression levels of long non-coding RNAs are prognostic for AML outcome
Mer, Arvind Singh, Lindberg, Johan, Nilsson, Christer, Klevebring, Daniel, Wang, Mei, Grönberg, Henrik, Lehmann, Soren, Rantalainen, Mattias
Published in Journal of hematology and oncology (07.04.2018)
Published in Journal of hematology and oncology (07.04.2018)
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Journal Article
Assessing therapy response in patient-derived xenografts
Ortmann, Janosch, Rampášek, Ladislav, Tai, Elijah, Mer, Arvind Singh, Shi, Ruoshi, Stewart, Erin L, Mascaux, Celine, Fares, Aline, Pham, Nhu-An, Beri, Gangesh, Eeles, Christopher, Tkachuk, Denis, Ho, Chantal, Sakashita, Shingo, Weiss, Jessica, Jiang, Xiaoqian, Liu, Geoffrey, Cescon, David W, O'Brien, Catherine A, Guo, Sheng, Tsao, Ming-Sound, Haibe-Kains, Benjamin, Goldenberg, Anna
Published in Science translational medicine (17.11.2021)
Published in Science translational medicine (17.11.2021)
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Journal Article
Integrative cancer pharmacogenomics to establish drug mechanism of action: drug repurposing
El-Hachem, Nehme, Ba-alawi, Wail, Smith, Ian, Mer, Arvind Singh, Haibe-Kains, Benjamin
Published in Pharmacogenomics (01.11.2017)
Published in Pharmacogenomics (01.11.2017)
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Journal Article
MicroRNAs modulate the dynamics of the NF-κB signaling pathway
Vaz, Candida, Mer, Arvind Singh, Bhattacharya, Alok, Ramaswamy, Ramakrishna
Published in PloS one (17.11.2011)
Published in PloS one (17.11.2011)
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Journal Article
Highlights from the 16th International Society for Computational Biology Student Council Symposium 2020 [version 1; peer review: not peer reviewed]
Cuypers, Wim L, Dönertaş, Handan Melike, Grewal, Jasleen K, Fatima, Nazeefa, Donnelly, Chase, Mer, Arvind Singh, Krieger, Spencer, Cuypers, Bart, Rahman, Farzana
Published in F1000 research (2021)
Published in F1000 research (2021)
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Journal Article
Novel subtypes of NPM1-mutated AML with distinct outcome
Mer, Arvind Singh, Minden, Mark D., Haibe-Kains, Benjamin, Schimmer, Aaron D.
Published in Molecular & cellular oncology (04.07.2021)
Published in Molecular & cellular oncology (04.07.2021)
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Journal Article
Drug sensitivity prediction from cell line-based pharmacogenomics data: guidelines for developing machine learning models
Sharifi-Noghabi, Hossein, Jahangiri-Tazehkand, Soheil, Smirnov, Petr, Hon, Casey, Mammoliti, Anthony, Nair, Sisira Kadambat, Mer, Arvind Singh, Ester, Martin, Haibe-Kains, Benjamin
Published in Briefings in bioinformatics (05.11.2021)
Published in Briefings in bioinformatics (05.11.2021)
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Journal Article
Bimodal Gene Expression in Patients with Cancer Provides Interpretable Biomarkers for Drug Sensitivity
Ba-Alawi, Wail, Nair, Sisira Kadambat, Li, Bo, Mammoliti, Anthony, Smirnov, Petr, Mer, Arvind Singh, Penn, Linda Z., Haibe-Kains, Benjamin
Published in Cancer research (Chicago, Ill.) (05.07.2022)
Published in Cancer research (Chicago, Ill.) (05.07.2022)
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Journal Article
Abstract PO-070: Bimodality of gene expression in cancer patient tumors as interpretable biomarkers for drug sensitivity
Ba-alawi, Wail, Nair, Sisira Kadambat, Li, Bo, Mammoliti, Anthony, Smirnov, Petr, Mer, Arvind Singh, Penn, Linda, Haibe-Kains, Benjamin
Published in Clinical cancer research (01.03.2021)
Published in Clinical cancer research (01.03.2021)
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Journal Article
Abstract PR-07: ORCESTRA: A platform for orchestrating and sharing high-throughput multimodal data analyses
Mammoliti, Anthony, Smirnov, Petr, Nakano, Minoru, Safikhani, Zhaleh, Nair, Sisira, Mer, Arvind Singh, Ho, Chantal, Beri, Gangesh, Haibe-Kains, Benjamin
Published in Clinical cancer research (01.03.2021)
Published in Clinical cancer research (01.03.2021)
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Journal Article
PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis
Feizi, Nikta, Nair, Sisira Kadambat, Smirnov, Petr, Beri, Gangesh, Eeles, Christopher, Esfahani, Parinaz Nasr, Nakano, Minoru, Tkachuk, Denis, Mammoliti, Anthony, Gorobets, Evgeniya, Mer, Arvind Singh, Lin, Eva, Yu, Yihong, Martin, Scott, Hafner, Marc, Haibe-Kains, Benjamin
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
Spatiotemporal modeling of chemoresistance evolution in breast tumors uncovers dependencies on SLC38A7 and SLC46A1
Audet-Delage, Yannick, St-Louis, Catherine, Minarrieta, Lucía, McGuirk, Shawn, Kurreal, Irwin, Annis, Matthew G., Mer, Arvind Singh, Siegel, Peter M., St-Pierre, Julie
Published in Cell reports (Cambridge) (31.10.2023)
Published in Cell reports (Cambridge) (31.10.2023)
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Journal Article
Abstract 3378: Systematic pharmacogenomic analysis of large patient derived xenografts data
Mer, Arvind Singh, Ba-alawi, Wail, Smirnov, Petr, Wang, Yi Xiao, Brew, Ben, Tsao, Ming-Sound, Cescon, David, Goldenberg, Anna, Haibe-Kains, Benjamin
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article