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Varoquaux, Nelle, Cole, Benjamin, Gao, Cheng, Pierroz, Grady, Baker, Christopher R., Patel, Dhruv, Madera, Mary, Jeffers, Tim, Hollingsworth, Joy, Sievert, Julie, Yoshinaga, Yuko, Owiti, Judith A., Singan, Vasanth R., DeGraaf, Stephanie, Xu, Ling, Blow, Matthew J., Harrison, Maria J., Visel, Axel, Jansson, Christer, Niyogi, Krishna K., Hutmacher, Robert, Coleman-Derr, Devin, O’Malley, Ronan C., Taylor, John W., Dahlberg, Jeffery, Vogel, John P., Lemaux, Peggy G., Purdom, Elizabeth
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
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Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus
Zhang, Jin, Yang, Yongil, Zheng, Kaijie, Xie, Meng, Feng, Kai, Jawdy, Sara S., Gunter, Lee E., Ranjan, Priya, Singan, Vasanth R., Engle, Nancy, Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Zhao, Nan, Tschaplinski, Timothy J., LeBoldus, Jared, Tuskan, Gerald A., Chen, Jin‐Gui, Muchero, Wellington
Published in The New phytologist (01.10.2018)
Published in The New phytologist (01.10.2018)
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Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
Banerjee, Deepanwita, Eng, Thomas, Lau, Andrew K., Sasaki, Yusuke, Wang, Brenda, Chen, Yan, Prahl, Jan-Philip, Singan, Vasanth R., Herbert, Robin A., Liu, Yuzhong, Tanjore, Deepti, Petzold, Christopher J., Keasling, Jay D., Mukhopadhyay, Aindrila
Published in Nature communications (23.10.2020)
Published in Nature communications (23.10.2020)
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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
Fochi, Valeria, Chitarra, Walter, Kohler, Annegret, Voyron, Samuele, Singan, Vasanth R., Lindquist, Erika A., Barry, Kerrie W., Girlanda, Mariangela, Grigoriev, Igor V., Martin, Francis, Balestrini, Raffaella, Perotto, Silvia
Published in The New phytologist (01.01.2017)
Published in The New phytologist (01.01.2017)
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Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses
Schwessinger, Benjamin, Bahar, Ofir, Thomas, Nicholas, Thomas, Nicolas, Holton, Nicolas, Nekrasov, Vladimir, Ruan, Deling, Canlas, Patrick E, Daudi, Arsalan, Petzold, Christopher J, Singan, Vasanth R, Kuo, Rita, Chovatia, Mansi, Daum, Christopher, Heazlewood, Joshua L, Zipfel, Cyril, Ronald, Pamela C
Published in PLoS pathogens (01.03.2015)
Published in PLoS pathogens (01.03.2015)
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Serendipita Fungi Modulate the Switchgrass Root Transcriptome to Circumvent Host Defenses and Establish a Symbiotic Relationship
Ray, Prasun, Guo, Yingqing, Chi, Myoung-Hwan, Krom, Nick, Boschiero, Clarissa, Watson, Bonnie, Huhman, David, Zhao, Patrick, Singan, Vasanth R, Lindquist, Erika A, Yan, Juying, Adam, Catherine, Craven, Kelly D
Published in Molecular plant-microbe interactions (01.10.2021)
Published in Molecular plant-microbe interactions (01.10.2021)
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A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism
Xiong, Yi, Wu, Vincent W, Lubbe, Andrea, Qin, Lina, Deng, Siwen, Kennedy, Megan, Bauer, Diane, Singan, Vasanth R, Barry, Kerrie, Northen, Trent R, Grigoriev, Igor V, Glass, N Louise
Published in PLoS genetics (03.05.2017)
Published in PLoS genetics (03.05.2017)
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Dichomitus squalens partially tailors its molecular responses to the composition of solid wood
Daly, Paul, López, Sara Casado, Peng, Mao, Lancefield, Christopher S., Purvine, Samuel O., Kim, Young‐Mo, Zink, Erika M., Dohnalkova, Alice, Singan, Vasanth R., Lipzen, Anna, Dilworth, David, Wang, Mei, Ng, Vivian, Robinson, Errol, Orr, Galya, Baker, Scott E., Bruijnincx, Pieter C. A., Hildén, Kristiina S., Grigoriev, Igor V., Mäkelä, Miia R., de Vries, Ronald P.
Published in Environmental microbiology (01.11.2018)
Published in Environmental microbiology (01.11.2018)
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Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress
Banerjee, Deepanwita, Eng, Thomas, Sasaki, Yusuke, Srinivasan, Aparajitha, Oka, Asun, Herbert, Robin A., Trinh, Jessica, Singan, Vasanth R., Sun, Ning, Putnam, Dan, Scown, Corinne D., Simmons, Blake, Mukhopadhyay, Aindrila
Published in Frontiers in bioengineering and biotechnology (18.11.2021)
Published in Frontiers in bioengineering and biotechnology (18.11.2021)
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Genomic variation within the maize stiff‐stalk heterotic germplasm pool
Bornowski, Nolan, Michel, Kathryn J., Hamilton, John P., Ou, Shujun, Seetharam, Arun S., Jenkins, Jerry, Grimwood, Jane, Plott, Chris, Shu, Shengqiang, Talag, Jayson, Kennedy, Megan, Hundley, Hope, Singan, Vasanth R., Barry, Kerrie, Daum, Chris, Yoshinaga, Yuko, Schmutz, Jeremy, Hirsch, Candice N., Hufford, Matthew B., Leon, Natalia, Kaeppler, Shawn M., Buell, C. Robin
Published in The plant genome (01.11.2021)
Published in The plant genome (01.11.2021)
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Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images
Singan, Vasanth R, Jones, Thouis R, Curran, Kathleen M, Simpson, Jeremy C
Published in BMC bioinformatics (21.10.2011)
Published in BMC bioinformatics (21.10.2011)
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Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses
Schwessinger, Benjamin, Bahar, Ofir, Thomas, Nicholas, Holton, Nicolas, Nekrasov, Vladimir, Ruan, Deling, Canlas, Patrick E, Daudi, Arsalan, Petzold, Christopher J, Singan, Vasanth R, Kuo, Rita, Chovatia, Mansi, Daum, Christopher, Heazlewood, Joshua L, Zipfel, Cyril, Ronald, Pamela C
Published in PLoS pathogens (23.04.2015)
Published in PLoS pathogens (23.04.2015)
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The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis
Wong-Bajracharya, Johanna, Singan, Vasanth R, Monti, Remo, Plett, Krista L, Ng, Vivian, Grigoriev, Igor V, Martin, Francis M, Anderson, Ian C, Plett, Jonathan M
Published in Proceedings of the National Academy of Sciences - PNAS (18.01.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (18.01.2022)
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Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells
Stadler, Charlotte, Rexhepaj, Elton, Singan, Vasanth R, Murphy, Robert F, Pepperkok, Rainer, Uhlén, Mathias, Simpson, Jeremy C, Lundberg, Emma
Published in Nature methods (01.04.2013)
Published in Nature methods (01.04.2013)
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Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP‐TF and determination of its transcriptional effect
Xie, Meng, Zhang, Jin, Singan, Vasanth R., McGranahan, Melissa J., LaFayette, Peter R., Jawdy, Sara S., Engle, Nancy, Doeppke, Crissa, Tschaplinski, Timothy J., Davis, Mark F., Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Parrott, Wayne A., Chen, Feng, Tuskan, Gerald A., Chen, Jin‐Gui, Muchero, Wellington
Published in Plant direct (01.01.2020)
Published in Plant direct (01.01.2020)
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The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus
Wu, Vincent W., Thieme, Nils, Huberman, Lori B., Dietschmann, Axel, Kowbel, David J., Lee, Juna, Calhoun, Sara, Singan, Vasanth R., Lipzen, Anna, Xiong, Yi, Monti, Remo, Blow, Matthew J., O’Malley, Ronan C., Grigoriev, Igor V., Benz, J. Philipp, Glass, N. Louise
Published in Proceedings of the National Academy of Sciences - PNAS (17.03.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (17.03.2020)
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Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway
Simpson, Jeremy C., Joggerst, Brigitte, Laketa, Vibor, Verissimo, Fatima, Cetin, Cihan, Erfle, Holger, Bexiga, Mariana G., Singan, Vasanth R., Hériché, Jean-Karim, Neumann, Beate, Mateos, Alvaro, Blake, Jonathon, Bechtel, Stephanie, Benes, Vladimir, Wiemann, Stefan, Ellenberg, Jan, Pepperkok, Rainer
Published in Nature cell biology (01.07.2012)
Published in Nature cell biology (01.07.2012)
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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.
Published in Nature communications (29.07.2020)
Published in Nature communications (29.07.2020)
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