How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Schurch, Nicholas J, Schofield, Pietá, Gierliński, Marek, Cole, Christian, Sherstnev, Alexander, Singh, Vijender, Wrobel, Nicola, Gharbi, Karim, Simpson, Gordon G, Owen-Hughes, Tom, Blaxter, Mark, Barton, Geoffrey J
Published in RNA (Cambridge) (01.06.2016)
Published in RNA (Cambridge) (01.06.2016)
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Journal Article
Arabidopsis, the Rosetta Stone of Flowering Time?
Simpson, Gordon G., Dean, Caroline
Published in Science (American Association for the Advancement of Science) (12.04.2002)
Published in Science (American Association for the Advancement of Science) (12.04.2002)
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Journal Article
U6 snRNA m6A modification is required for accurate and efficient splicing of C. elegans and human pre-mRNAs
Shen, Aykut, Hencel, Katarzyna, Parker, Matthew T, Scott, Robyn, Skukan, Roberta, Adesina, Aduragbemi S, Metheringham, Carey L, Miska, Eric A, Nam, Yunsun, Haerty, Wilfried, Simpson, Gordon G, Akay, Alper
Published in Nucleic acids research (27.08.2024)
Published in Nucleic acids research (27.08.2024)
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Journal Article
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
Bredeson, Jessen V., Lyons, Jessica B., Oniyinde, Ibukun O., Okereke, Nneka R., Kolade, Olufisayo, Nnabue, Ikenna, Nwadili, Christian O., Hřibová, Eva, Parker, Matthew, Nwogha, Jeremiah, Shu, Shengqiang, Carlson, Joseph, Kariba, Robert, Muthemba, Samuel, Knop, Katarzyna, Barton, Geoffrey J., Sherwood, Anna V., Lopez-Montes, Antonio, Asiedu, Robert, Jamnadass, Ramni, Muchugi, Alice, Goodstein, David, Egesi, Chiedozie N., Featherston, Jonathan, Asfaw, Asrat, Simpson, Gordon G., Doležel, Jaroslav, Hendre, Prasad S., Van Deynze, Allen, Kumar, Pullikanti Lava, Obidiegwu, Jude E., Bhattacharjee, Ranjana, Rokhsar, Daniel S.
Published in Nature communications (14.04.2022)
Published in Nature communications (14.04.2022)
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Journal Article
Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation
Sherstnev, Alexander, Duc, Céline, Cole, Christian, Zacharaki, Vasiliki, Hornyik, Csaba, Ozsolak, Fatih, Milos, Patrice M, Barton, Geoffrey J, Simpson, Gordon G
Published in Nature structural & molecular biology (01.08.2012)
Published in Nature structural & molecular biology (01.08.2012)
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Journal Article
Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K
Parker, Matthew T, Fica, Sebastian M, Barton, Geoffrey J, Simpson, Gordon G
Published in eLife (03.10.2023)
Published in eLife (03.10.2023)
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Journal Article
Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA
Duc, Céline, Sherstnev, Alexander, Cole, Christian, Barton, Geoffrey J, Simpson, Gordon G
Published in PLoS genetics (01.10.2013)
Published in PLoS genetics (01.10.2013)
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Journal Article
Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA
Parker, Matthew T, Knop, Katarzyna, Zacharaki, Vasiliki, Sherwood, Anna V, Tomé, Daniel, Yu, Xuhong, Martin, Pascal Gp, Beynon, Jim, Michaels, Scott D, Barton, Geoffrey J, Simpson, Gordon G
Published in eLife (27.04.2021)
Published in eLife (27.04.2021)
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Journal Article
Two zinc finger proteins with functions in m6A writing interact with HAKAI
Zhang, Mi, Bodi, Zsuzsanna, Mackinnon, Katarzyna, Zhong, Silin, Archer, Nathan, Mongan, Nigel P., Simpson, Gordon G., Fray, Rupert G.
Published in Nature communications (02.03.2022)
Published in Nature communications (02.03.2022)
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Journal Article
Arabidopsis RNA immunoprecipitation
Terzi, Lionel C, Simpson, Gordon G
Published in The Plant journal : for cell and molecular biology (01.07.2009)
Published in The Plant journal : for cell and molecular biology (01.07.2009)
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Journal Article
Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs
Schurch, Nicholas J, Cole, Christian, Sherstnev, Alexander, Song, Junfang, Duc, Céline, Storey, Kate G, McLean, W H Irwin, Brown, Sara J, Simpson, Gordon G, Barton, Geoffrey J
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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Journal Article
Alternative polyadenylation of antisense RNAs and flowering time control
Hornyik, Csaba, Duc, Céline, Rataj, Katarzyna, Terzi, Lionel C, Simpson, Gordon G
Published in Biochemical Society transactions (01.08.2010)
Published in Biochemical Society transactions (01.08.2010)
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Journal Article
The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation
Lyons, Rebecca, Iwase, Akira, Gänsewig, Thomas, Sherstnev, Alexander, Duc, Céline, Barton, Geoffrey J., Hanada, Kousuke, Higuchi-Takeuchi, Mieko, Matsui, Minami, Sugimoto, Keiko, Kazan, Kemal, Simpson, Gordon G., Shirasu, Ken
Published in Scientific reports (09.10.2013)
Published in Scientific reports (09.10.2013)
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Journal Article
Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis
Vanholme, Ruben, Cesarino, Igor, Rataj, Katarzyna, Xiao, Yuguo, Sundin, Lisa, Goeminne, Geert, Kim, Hoon, Cross, Joanna, Morreel, Kris, Araujo, Pedro, Welsh, Lydia, Haustraete, Jurgen, McClellan, Christopher, Vanholme, Bartel, Ralph, John, Simpson, Gordon G., Halpin, Claire, Boerjan, Wout
Published in Science (American Association for the Advancement of Science) (06.09.2013)
Published in Science (American Association for the Advancement of Science) (06.09.2013)
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Journal Article
WHEN TO SWITCH TO FLOWERING
Simpson, Gordon G, Gendall, Anthony R, Dean, Caroline
Published in Annual review of cell and developmental biology (01.01.1999)
Published in Annual review of cell and developmental biology (01.01.1999)
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Journal Article