An extensive evaluation of read trimming effects on Illumina NGS data analysis
Del Fabbro, Cristian, Scalabrin, Simone, Morgante, Michele, Giorgi, Federico M
Published in PloS one (23.12.2013)
Published in PloS one (23.12.2013)
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Journal Article
Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach
Falchi, Rachele, Vendramin, Elisa, Zanon, Laura, Scalabrin, Simone, Cipriani, Guido, Verde, Ignazio, Vizzotto, Giannina, Morgante, Michele
Published in The Plant journal : for cell and molecular biology (01.10.2013)
Published in The Plant journal : for cell and molecular biology (01.10.2013)
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Journal Article
A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm
Scalabrin, Simone, Toniutti, Lucile, Di Gaspero, Gabriele, Scaglione, Davide, Magris, Gabriele, Vidotto, Michele, Pinosio, Sara, Cattonaro, Federica, Magni, Federica, Jurman, Irena, Cerutti, Mario, Suggi Liverani, Furio, Navarini, Luciano, Del Terra, Lorenzo, Pellegrino, Gloria, Ruosi, Manuela Rosanna, Vitulo, Nicola, Valle, Giorgio, Pallavicini, Alberto, Graziosi, Giorgio, Klein, Patricia E., Bentley, Nolan, Murray, Seth, Solano, William, Al Hakimi, Amin, Schilling, Timothy, Montagnon, Christophe, Morgante, Michele, Bertrand, Benoit
Published in Scientific reports (13.03.2020)
Published in Scientific reports (13.03.2020)
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Journal Article
Single primer enrichment technology as a tool for massive genotyping: a benchmark on black poplar and maize
Scaglione, Davide, Pinosio, Sara, Marroni, Fabio, Di Centa, Eleonora, Fornasiero, Alice, Magris, Gabriele, Scalabrin, Simone, Cattonaro, Federica, Taylor, Gail, Morgante, Michele
Published in Annals of botany (29.10.2019)
Published in Annals of botany (29.10.2019)
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Journal Article
Historical introgression of the downy mildew resistance gene Rpv12 from the Asian species Vitis amurensis into grapevine varieties
Venuti, Silvia, Copetti, Dario, Foria, Serena, Falginella, Luigi, Hoffmann, Sarolta, Bellin, Diana, Cindrić, Petar, Kozma, Pál, Scalabrin, Simone, Morgante, Michele, Testolin, Raffaele, Di Gaspero, Gabriele
Published in PloS one (12.04.2013)
Published in PloS one (12.04.2013)
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Journal Article
A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach
Vendramin, Elisa, Pea, Giorgio, Dondini, Luca, Pacheco, Igor, Dettori, Maria Teresa, Gazza, Laura, Scalabrin, Simone, Strozzi, Francesco, Tartarini, Stefano, Bassi, Daniele, Verde, Ignazio, Rossini, Laura
Published in PloS one (03.03.2014)
Published in PloS one (03.03.2014)
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Journal Article
A chromosome-scale assembly reveals chromosomal aberrations and exchanges generating genetic diversity in Coffea arabica germplasm
Scalabrin, Simone, Magris, Gabriele, Liva, Mario, Vitulo, Nicola, Vidotto, Michele, Scaglione, Davide, Del Terra, Lorenzo, Ruosi, Manuela Rosanna, Navarini, Luciano, Pellegrino, Gloria, Berny Mier y Teran, Jorge Carlos, Toniutti, Lucile, Suggi Liverani, Furio, Cerutti, Mario, Di Gaspero, Gabriele, Morgante, Michele
Published in Nature communications (23.01.2024)
Published in Nature communications (23.01.2024)
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Journal Article
Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm
Verde, Ignazio, Bassil, Nahla, Scalabrin, Simone, Gilmore, Barbara, Lawley, Cynthia T, Gasic, Ksenija, Micheletti, Diego, Rosyara, Umesh R, Cattonaro, Federica, Vendramin, Elisa, Main, Dorrie, Aramini, Valeria, Blas, Andrea L, Mockler, Todd C, Bryant, Douglas W, Wilhelm, Larry, Troggio, Michela, Sosinski, Bryon, Aranzana, Maria José, Arús, Pere, Iezzoni, Amy, Morgante, Michele, Peace, Cameron, Wu, Rongling
Published in PloS one (20.04.2012)
Published in PloS one (20.04.2012)
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Journal Article
Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution
Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesneville, Hadi, Teycheney, Pierre-Yves
Published in Nature communications (10.11.2014)
Published in Nature communications (10.11.2014)
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Journal Article
Resilience of genetic diversity in forest trees over the Quaternary
Milesi, Pascal, Kastally, Chedly, Dauphin, Benjamin, Cervantes, Sandra, Bagnoli, Francesca, Budde, Katharina B., Cavers, Stephen, Fady, Bruno, Faivre-Rampant, Patricia, González-Martínez, Santiago C., Grivet, Delphine, Gugerli, Felix, Jorge, Véronique, Lesur Kupin, Isabelle, Ojeda, Dario I., Olsson, Sanna, Opgenoorth, Lars, Pinosio, Sara, Plomion, Christophe, Rellstab, Christian, Rogier, Odile, Scalabrin, Simone, Scotti, Ivan, Vendramin, Giovanni G., Westergren, Marjana, Lascoux, Martin, Pyhäjärvi, Tanja
Published in Nature communications (14.10.2024)
Published in Nature communications (14.10.2024)
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Journal Article
The functional capacity of plantaricin-producing Lactobacillus plantarum SF9C and S-layer-carrying Lactobacillus brevis SF9B to withstand gastrointestinal transit
Butorac, Katarina, Banić, Martina, Novak, Jasna, Leboš Pavunc, Andreja, Uroić, Ksenija, Durgo, Ksenija, Oršolić, Nada, Kukolj, Marina, Radović, Slobodanka, Scalabrin, Simone, Žučko, Jurica, Starčević, Antonio, Šušković, Jagoda, Kos, Blaženka
Published in Microbial cell factories (19.05.2020)
Published in Microbial cell factories (19.05.2020)
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Journal Article
Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra
Wildhagen, Henning, Paul, Shanty, Allwright, Mike, Smith, Hazel K, Malinowska, Marta, Schnabel, Sabine K, Paulo, M João, Cattonaro, Federica, Vendramin, Vera, Scalabrin, Simone, Janz, Dennis, Douthe, Cyril, Brendel, Oliver, Buré, Cyril, Cohen, David, Hummel, Irène, Le Thiec, Didier, van Eeuwijk, Fred, Keurentjes, Joost J B, Flexas, Jaume, Morgante, Michele, Robson, Paul, Bogeat-Triboulot, Marie-Béatrice, Taylor, Gail, Polle, Andrea
Published in Tree physiology (01.03.2018)
Published in Tree physiology (01.03.2018)
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Journal Article
Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm
Vendramin, Vera, Ormanbekova, Danara, Scalabrin, Simone, Scaglione, Davide, Maccaferri, Marco, Martelli, Pierluigi, Salvi, Silvio, Jurman, Irena, Casadio, Rita, Cattonaro, Federica, Tuberosa, Roberto, Massi, Andrea, Morgante, Michele
Published in BMC genomics (10.04.2019)
Published in BMC genomics (10.04.2019)
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Journal Article
Genetic Mapping of the Incompatibility Locus in Olive and Development of a Linked Sequence-Tagged Site Marker
Mariotti, Roberto, Fornasiero, Alice, Mousavi, Soraya, Cultrera, Nicolò G M, Brizioli, Federico, Pandolfi, Saverio, Passeri, Valentina, Rossi, Martina, Magris, Gabriele, Scalabrin, Simone, Scaglione, Davide, Di Gaspero, Gabriele, Saumitou-Laprade, Pierre, Vernet, Philippe, Alagna, Fiammetta, Morgante, Michele, Baldoni, Luciana
Published in Frontiers in plant science (28.01.2020)
Published in Frontiers in plant science (28.01.2020)
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Journal Article
Resistance to Sharka in Apricot: Comparison of Phase-Reconstructed Resistant and Susceptible Haplotypes of 'Lito' Chromosome 1 and Analysis of Candidate Genes
De Mori, Gloria, Falchi, Rachele, Testolin, Raffaele, Bassi, Daniele, Savazzini, Federica, Dondini, Luca, Tartarini, Stefano, Palmisano, Francesco, Minafra, Angelantonio, Spadotto, Alessandro, Scalabrin, Simone, Geuna, Filippo
Published in Frontiers in plant science (04.12.2019)
Published in Frontiers in plant science (04.12.2019)
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Journal Article
A 3,000-Loci Transcription Map of Chromosome 3B Unravels the Structural and Functional Features of Gene Islands in Hexaploid Wheat
Rustenholz, Camille, Choulet, Frédéric, Laugier, Christel, Šafář, Jan, Šimková, Hana, Doležel, Jaroslav, Magni, Federica, Scalabrin, Simone, Cattonaro, Federica, Vautrin, Sonia, Bellec, Arnaud, Bergès, Hélène, Feuillet, Catherine, Paux, Etienne
Published in Plant physiology (Bethesda) (01.12.2011)
Published in Plant physiology (Bethesda) (01.12.2011)
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Journal Article
A physical map of the short arm of wheat chromosome 1A
Breen, James, Wicker, Thomas, Shatalina, Margarita, Frenkel, Zeev, Bertin, Isabelle, Philippe, Romain, Spielmeyer, Wolfgang, Simková, Hana, Safář, Jan, Cattonaro, Federica, Scalabrin, Simone, Magni, Federica, Vautrin, Sonia, Bergès, Hélène, Paux, Etienne, Fahima, Tzion, Doležel, Jaroslav, Korol, Abraham, Feuillet, Catherine, Keller, Beat
Published in PloS one (21.11.2013)
Published in PloS one (21.11.2013)
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Journal Article
Genotypic and tissue-specific variation of Populus nigra transcriptome profiles in response to drought
Eckert, Christian, Wildhagen, Henning, Paulo, Maria João, Scalabrin, Simone, Ballauff, Johannes, Schnabel, Sabine K., Vendramin, Vera, Keurentjes, Joost J. B., Bogeat-Triboulot, Marie-Béatrice, Taylor, Gail, Polle, Andrea
Published in Scientific data (14.06.2022)
Published in Scientific data (14.06.2022)
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Journal Article
Mapping and sequencing complex genomes: let's get physical
Morgante, Michele, Meyers, Blake C, Scalabrin, Simone
Published in Nature reviews. Genetics (01.08.2004)
Published in Nature reviews. Genetics (01.08.2004)
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Journal Article
Wnt-mediated Down-regulation of Sp1 Target Genes by a Transcriptional Repressor Sp5
Fujimura, Naoko, Vacik, Tomas, Machon, Ondrej, Vlcek, Cestmir, Scalabrin, Simone, Speth, Martin, Diep, Dzung, Krauss, Stefan, Kozmik, Zbynek
Published in The Journal of biological chemistry (12.01.2007)
Published in The Journal of biological chemistry (12.01.2007)
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