GBRAS-Net: A Convolutional Neural Network Architecture for Spatial Image Steganalysis
Reinel, Tabares-Soto, Brayan, Arteaga-Arteaga Harold, Alejandro, Bravo-Ortiz Mario, Alejandro, Mora-Rubio, Daniel, Arias-Garzon, Alejandro, Alzate-Grisales Jesus, Buenaventura, Burbano-Jacome Alejandro, Simon, Orozco-Arias, Gustavo, Isaza, Raul, Ramos-Pollan
Published in IEEE access (2021)
Published in IEEE access (2021)
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Journal Article
Coffee Maturity Classification Using Convolutional Neural Networks and Transfer Learning
Tamayo-Monsalve, Manuel Alejandro, Esteban Mercado Ruiz, Juan Pablo Villa Pulgarin, Bravo Ortiz, Mario Alejandro, Harold Brayan Arteaga Arteaga, Alejandro Mora Rubio, Alzate-Grisales, Jesus Alejandro, Daniel Arias Garzon, Victor Romero Cano, Simon Orozco Arias, Osorio, Gustavo, Reinel Tabares Soto
Published in IEEE access (2022)
Published in IEEE access (2022)
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Journal Article
Genomic object detection: An improved approach for transposable elements detection and classification using convolutional neural networks
Orozco-Arias, Simon, Lopez-Murillo, Luis Humberto, Piña, Johan S, Valencia-Castrillon, Estiven, Tabares-Soto, Reinel, Castillo-Ossa, Luis, Isaza, Gustavo, Guyot, Romain
Published in PloS one (21.09.2023)
Published in PloS one (21.09.2023)
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Journal Article
Clasificación de cáncer cervical usando redes neuronales convolucionales, transferencia de aprendizaje y aumento de datos
Bravo Ortíz, Mario Alejandro, Arteaga Arteaga, Harold Brayan, Tabares Soto, Reinel, Padilla Buriticá, Jorge Iván, Orozco-Arias, Simon
Published in Revista EIA (01.06.2021)
Published in Revista EIA (01.06.2021)
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Journal Article
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago
Raharimalala, Nathalie, Rombauts, Stephane, McCarthy, Andrew, Garavito, Andréa, Orozco-Arias, Simon, Bellanger, Laurence, Morales-Correa, Alexa Yadira, Froger, Solène, Michaux, Stéphane, Berry, Victoria, Metairon, Sylviane, Fournier, Coralie, Lepelley, Maud, Mueller, Lukas, Couturon, Emmanuel, Hamon, Perla, Rakotomalala, Jean-Jacques, Descombes, Patrick, Guyot, Romain, Crouzillat, Dominique
Published in Scientific reports (14.04.2021)
Published in Scientific reports (14.04.2021)
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Journal Article
A comparative study of machine learning and deep learning algorithms to classify cancer types based on microarray gene expression data
Tabares-Soto, Reinel, Orozco-Arias, Simon, Romero-Cano, Victor, Segovia Bucheli, Vanesa, Rodríguez-Sotelo, José Luis, Jiménez-Varón, Cristian Felipe
Published in PeerJ. Computer science (13.04.2020)
Published in PeerJ. Computer science (13.04.2020)
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Journal Article
COVID-19 detection in X-ray images using convolutional neural networks
Arias-Garzón, Daniel, Alzate-Grisales, Jesús Alejandro, Orozco-Arias, Simon, Arteaga-Arteaga, Harold Brayan, Bravo-Ortiz, Mario Alejandro, Mora-Rubio, Alejandro, Saborit-Torres, Jose Manuel, Serrano, Joaquim Ángel Montell, de la Iglesia Vayá, Maria, Cardona-Morales, Oscar, Tabares-Soto, Reinel
Published in Machine learning with applications (15.12.2021)
Published in Machine learning with applications (15.12.2021)
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Journal Article
K -mer-based machine learning method to classify LTR-retrotransposons in plant genomes
Orozco-Arias, Simon, Candamil-Cortés, Mariana S, Jaimes, Paula A, Piña, Johan S, Tabares-Soto, Reinel, Guyot, Romain, Isaza, Gustavo
Published in PeerJ (San Francisco, CA) (19.05.2021)
Published in PeerJ (San Francisco, CA) (19.05.2021)
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Journal Article
InpactorDB: A Classified Lineage-Level Plant LTR Retrotransposon Reference Library for Free-Alignment Methods Based on Machine Learning
Orozco-Arias, Simon, Jaimes, Paula A, Candamil, Mariana S, Jiménez-Varón, Cristian Felipe, Tabares-Soto, Reinel, Isaza, Gustavo, Guyot, Romain
Published in Genes (28.01.2021)
Published in Genes (28.01.2021)
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Journal Article
G-SAIP: Graphical Sequence Alignment Through Parallel Programming in the Post-Genomic Era
Piña, Johan S., Orozco-Arias, Simon, Tobón-Orozco, Nicolas, Camargo-Forero, Leonardo, Tabares-Soto, Reinel, Guyot, Romain
Published in Evolutionary bioinformatics online (01.01.2023)
Published in Evolutionary bioinformatics online (01.01.2023)
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Journal Article
Automatic curation of LTR retrotransposon libraries from plant genomes through machine learning
Orozco-Arias, Simon, Candamil-Cortes, Mariana S., Jaimes, Paula A., Valencia-Castrillon, Estiven, Tabares-Soto, Reinel, Isaza, Gustavo, Guyot, Romain
Published in Journal of integrative bioinformatics (30.09.2022)
Published in Journal of integrative bioinformatics (30.09.2022)
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Journal Article
Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions
de Castro Nunes, Renata, Orozco-Arias, Simon, Crouzillat, Dominique, Mueller, Lukas A, Strickler, Suzy R, Descombes, Patrick, Fournier, Coralie, Moine, Deborah, de Kochko, Alexandre, Yuyama, Priscila M, Vanzela, André L L, Guyot, Romain
Published in Frontiers in plant science (15.02.2018)
Published in Frontiers in plant science (15.02.2018)
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Journal Article
Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics
Orozco-Arias, Simon, Liu, Juan, Tabares-Soto, Reinel, Ceballos, Diego, Silva Domingues, Douglas, Garavito, Andréa, Ming, Ray, Guyot, Romain
Published in Biology (Basel, Switzerland) (25.05.2018)
Published in Biology (Basel, Switzerland) (25.05.2018)
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Journal Article
Machine learning applications to predict two-phase flow patterns
Arteaga-Arteaga, Harold Brayan, Mora-Rubio, Alejandro, Florez, Frank, Murcia-Orjuela, Nicolas, Diaz-Ortega, Cristhian Eduardo, Orozco-Arias, Simon, delaPava, Melissa, Bravo-Ortíz, Mario Alejandro, Robinson, Melvin, Guillen-Rondon, Pablo, Tabares-Soto, Reinel
Published in PeerJ. Computer science (29.11.2021)
Published in PeerJ. Computer science (29.11.2021)
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Journal Article
TIP_finder: An HPC Software to Detect Transposable Element Insertion Polymorphisms in Large Genomic Datasets
Orozco-Arias, Simon, Tobon-Orozco, Nicolas, Piña, Johan S., Jiménez-Varón, Cristian Felipe, Tabares-Soto, Reinel, Guyot, Romain
Published in Biology (Basel, Switzerland) (09.09.2020)
Published in Biology (Basel, Switzerland) (09.09.2020)
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Journal Article
Sensitivity of deep learning applied to spatial image steganalysis
Tabares-Soto, Reinel, Arteaga-Arteaga, Harold Brayan, Mora-Rubio, Alejandro, Bravo-Ortíz, Mario Alejandro, Arias-Garzón, Daniel, Alzate-Grisales, Jesús Alejandro, Orozco-Arias, Simon, Isaza, Gustavo, Ramos-Pollán, Raúl
Published in PeerJ. Computer science (31.08.2021)
Published in PeerJ. Computer science (31.08.2021)
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Journal Article
A Machine Learning-based Pipeline for the Classification of CTX-M in Metagenomics Samples
Ceballos, Diego, López-Álvarez, Diana, Isaza, Gustavo, Tabares-Soto, Reinel, Orozco-Arias, Simón, Ferrin, Carlos
Published in Processes (01.04.2019)
Published in Processes (01.04.2019)
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Journal Article