Understanding the Promises and Hurdles of Metagenomic Next-Generation Sequencing as a Diagnostic Tool for Infectious Diseases
Simner, Patricia J, Miller, Steven, Carroll, Karen C
Published in Clinical Infectious Diseases (01.03.2018)
Published in Clinical Infectious Diseases (01.03.2018)
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Journal Article
Book Review
The Human “Contaminome” and Understanding Infectious Disease
Simner, Patricia J., Salzberg, Steven L.
Published in The New England journal of medicine (08.09.2022)
Published in The New England journal of medicine (08.09.2022)
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Journal Article
Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients
Mostafa, Heba H, Fissel, John A, Fanelli, Brian, Bergman, Yehudit, Gniazdowski, Victoria, Dadlani, Manoj, Carroll, Karen C, Colwell, Rita R, Simner, Patricia J
Published in mBio (20.11.2020)
Published in mBio (20.11.2020)
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Journal Article
Modified Carbapenem Inactivation Method for Phenotypic Detection of Carbapenemase Production among Enterobacteriaceae
Pierce, Virginia M, Simner, Patricia J, Lonsway, David R, Roe-Carpenter, Darcie E, Johnson, J Kristie, Brasso, William B, Bobenchik, April M, Lockett, Zabrina C, Charnot-Katsikas, Angella, Ferraro, Mary Jane, Thomson, Jr, Richard B, Jenkins, Stephen G, Limbago, Brandi M, Das, Sanchita
Published in Journal of clinical microbiology (01.08.2017)
Published in Journal of clinical microbiology (01.08.2017)
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Journal Article
Comparison of 11 Phenotypic Assays for Accurate Detection of Carbapenemase-Producing Enterobacteriaceae
Tamma, Pranita D, Opene, Belita N A, Gluck, Andrew, Chambers, Krizia K, Carroll, Karen C, Simner, Patricia J
Published in Journal of clinical microbiology (01.04.2017)
Published in Journal of clinical microbiology (01.04.2017)
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Journal Article
Multicenter Evaluation of an MIC-Based Aztreonam and Ceftazidime-Avibactam Broth Disk Elution Test
Harris, Harley, Tao, Lili, Jacobs, Emily B, Bergman, Yehudit, Adebayo, Ayomikun, Tekle, Tsigedera, Lewis, Shawna, Dahlquist, Ashley, Abbey, Taylor C, Wenzler, Eric, Humphries, Romney, Simner, Patricia J
Published in Journal of clinical microbiology (23.05.2023)
Published in Journal of clinical microbiology (23.05.2023)
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Journal Article
Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics
Simner, Patricia J, Miller, Heather B, Breitwieser, Florian P, Pinilla Monsalve, Gabriel, Pardo, Carlos A, Salzberg, Steven L, Sears, Cynthia L, Thomas, David L, Eberhart, Charles G, Carroll, Karen C
Published in Journal of clinical microbiology (01.09.2018)
Published in Journal of clinical microbiology (01.09.2018)
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Journal Article
Evaluation of Piperacillin-Tazobactam Testing against Enterobacterales by the Phoenix, MicroScan, and Vitek2 Tests Using Updated Clinical and Laboratory Standards Institute Breakpoints
Manuel, Carmila, Maynard, Richard, Abbott, April, Adams, Kara, Alby, Kevin, Sweeney, Amy, Dien Bard, Jennifer, Flores, Irvin Ibarra, Rekasius, Violet, Harrington, Amanda, Kidd, Tiffany S, Mathers, Amy J, Tekle, Tsigereda, Simner, Patricia J, Humphries, Romney M
Published in Journal of clinical microbiology (22.02.2023)
Published in Journal of clinical microbiology (22.02.2023)
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Journal Article
Evaluation of NG-Test Carba 5 for Rapid Phenotypic Detection and Differentiation of Five Common Carbapenemase Families: Results of a Multicenter Clinical Evaluation
Jenkins, Stephen, Ledeboer, Nathan A, Westblade, Lars F, Burnham, C A, Faron, Matthew L, Bergman, Yehudit, Yee, Rebecca, Mesich, Brian, Gerstbrein, Derek, Wallace, Meghan A, Robertson, Amy, Fauntleroy, Kathy A, Klavins, Anna S, Malherbe, Rianna, Hsiung, Andre, Simner, Patricia J
Published in Journal of clinical microbiology (24.06.2020)
Published in Journal of clinical microbiology (24.06.2020)
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Journal Article
Automated antimicrobial susceptibility testing and antimicrobial resistance genotyping using Illumina and Oxford Nanopore Technologies sequencing data among Enterobacteriaceae
Conzemius, Rick, Bergman, Yehudit, Májek, Peter, Beisken, Stephan, Lewis, Shawna, Jacobs, Emily B, Tamma, Pranita D, Simner, Patricia J
Published in Frontiers in microbiology (08.08.2022)
Published in Frontiers in microbiology (08.08.2022)
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Journal Article
Comparison of a Novel, Rapid Chromogenic Biochemical Assay, the Carba NP Test, with the Modified Hodge Test for Detection of Carbapenemase-Producing Gram-Negative Bacilli
Vasoo, Shawn, Cunningham, Scott A, Kohner, Peggy C, Simner, Patricia J, Mandrekar, Jayawant N, Lolans, Karen, Hayden, Mary K, Patel, Robin
Published in Journal of Clinical Microbiology (01.09.2013)
Published in Journal of Clinical Microbiology (01.09.2013)
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Journal Article
Combined comparative genomics and clinical modeling reveals plasmid-encoded genes are independently associated with Klebsiella infection
Vornhagen, Jay, Roberts, Emily K, Unverdorben, Lavinia, Mason, Sophia, Patel, Alieysa, Crawford, Ryan, Holmes, Caitlyn L, Sun, Yuang, Teodorescu, Alexandra, Snitkin, Evan S, Zhao, Lili, Simner, Patricia J, Tamma, Pranita D, Rao, Krishna, Kaye, Keith S, Bachman, Michael A
Published in Nature communications (01.08.2022)
Published in Nature communications (01.08.2022)
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Journal Article
A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor
Vornhagen, Jay, Bassis, Christine M, Ramakrishnan, Srividya, Hein, Robert, Mason, Sophia, Bergman, Yehudit, Sunshine, Nicole, Fan, Yunfan, Holmes, Caitlyn L, Timp, Winston, Schatz, Michael C, Young, Vincent B, Simner, Patricia J, Bachman, Michael A
Published in PLoS pathogens (30.04.2021)
Published in PLoS pathogens (30.04.2021)
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Journal Article
Evaluation of five chromogenic agar media and the Rosco Rapid Carb screen kit for detection and confirmation of carbapenemase production in Gram-negative bacilli
Simner, Patricia J, Gilmour, Matthew W, DeGagne, Pat, Nichol, Kim, Karlowsky, James A
Published in Journal of clinical microbiology (01.01.2015)
Published in Journal of clinical microbiology (01.01.2015)
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Journal Article
Evaluation of the Direct MacConkey Method for Identification of Carbapenem-Resistant Gram-Negative Organisms from Rectal Swabs: Reevaluating Zone Diameter Cutoffs
Workneh, Meklit, Wang, Ruibin, Kazmi, Abida Q, Chambers, Krizia K, Opene, Belita N A, Lewis, Shawna, Goodman, Katherine, Tamma, Pranita D, Carroll, Karen C, Milstone, Aaron M, Simner, Patricia J
Published in Journal of clinical microbiology (01.12.2019)
Published in Journal of clinical microbiology (01.12.2019)
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Journal Article