BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
Manni, Mosè, Berkeley, Matthew R, Seppey, Mathieu, Simão, Felipe A, Zdobnov, Evgeny M
Published in Molecular biology and evolution (01.10.2021)
Published in Molecular biology and evolution (01.10.2021)
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Journal Article
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
Kriventseva, Evgenia V, Kuznetsov, Dmitry, Tegenfeldt, Fredrik, Manni, Mosè, Dias, Renata, Simão, Felipe A, Zdobnov, Evgeny M
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
Zdobnov, Evgeny M, Tegenfeldt, Fredrik, Kuznetsov, Dmitry, Waterhouse, Robert M, Simão, Felipe A, Ioannidis, Panagiotis, Seppey, Mathieu, Loetscher, Alexis, Kriventseva, Evgenia V
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
Waterhouse, Robert M, Seppey, Mathieu, Simão, Felipe A, Manni, Mosè, Ioannidis, Panagiotis, Klioutchnikov, Guennadi, Kriventseva, Evgenia V, Zdobnov, Evgeny M
Published in Molecular biology and evolution (01.03.2018)
Published in Molecular biology and evolution (01.03.2018)
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Journal Article
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
Kriventseva, Evgenia V, Tegenfeldt, Fredrik, Petty, Tom J, Waterhouse, Robert M, Simão, Felipe A, Pozdnyakov, Igor A, Ioannidis, Panagiotis, Zdobnov, Evgeny M
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
Genetic determinants of antimicrobial resistance in polymyxin B resistant Pseudomonas aeruginosa isolated from airways of patients with cystic fibrosis
Simão, Felipe A., Almeida, Mila M., Rosa, Heloísa S., Marques, Elizabeth A., Leão, Robson S.
Published in Brazilian journal of microbiology (01.06.2024)
Published in Brazilian journal of microbiology (01.06.2024)
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Journal Article
Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution
Hoy, Marjorie A, Waterhouse, Robert M, Wu, Ke, Estep, Alden S, Ioannidis, Panagiotis, Palmer, William J, Pomerantz, Aaron F, Simão, Felipe A, Thomas, Jainy, Jiggins, Francis M, Murphy, Terence D, Pritham, Ellen J, Robertson, Hugh M, Zdobnov, Evgeny M, Gibbs, Richard A, Richards, Stephen
Published in Genome biology and evolution (01.06.2016)
Published in Genome biology and evolution (01.06.2016)
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Journal Article
Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders
Ioannidis, Panagiotis, Simao, Felipe A, Waterhouse, Robert M, Manni, Mosè, Seppey, Mathieu, Robertson, Hugh M, Misof, Bernhard, Niehuis, Oliver, Zdobnov, Evgeny M
Published in Genome biology and evolution (01.02.2017)
Published in Genome biology and evolution (01.02.2017)
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Journal Article
The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations
Manni, Mosè, Simao, Felipe A, Robertson, Hugh M, Gabaglio, Marco A, Waterhouse, Robert M, Misof, Bernhard, Niehuis, Oliver, Szucsich, Nikolaus U, Zdobnov, Evgeny M
Published in Genome biology and evolution (01.01.2020)
Published in Genome biology and evolution (01.01.2020)
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Journal Article
Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes
Neafsey, Daniel E, Waterhouse, Robert M, Abai, Mohammad R, Aganezov, Sergey S, Alekseyev, Max A, Allen, James E, Amon, James, Arcà, Bruno, Arensburger, Peter, Artemov, Gleb, Assour, Lauren A, Basseri, Hamidreza, Berlin, Aaron, Birren, Bruce W, Blandin, Stephanie A, Brockman, Andrew I, Burkot, Thomas R, Burt, Austin, Chan, Clara S, Chauve, Cedric, Chiu, Joanna C, Christensen, Mikkel, Costantini, Carlo, Davidson, Victoria L M, Deligianni, Elena, Dottorini, Tania, Dritsou, Vicky, Gabriel, Stacey B, Guelbeogo, Wamdaogo M, Hall, Andrew B, Han, Mira V, Hlaing, Thaung, Hughes, Daniel S T, Jenkins, Adam M, Jiang, Xiaofang, Jungreis, Irwin, Kakani, Evdoxia G, Kamali, Maryam, Kemppainen, Petri, Kennedy, Ryan C, Kirmitzoglou, Ioannis K, Koekemoer, Lizette L, Laban, Njoroge, Langridge, Nicholas, Lawniczak, Mara K N, Lirakis, Manolis, Lobo, Neil F, Lowy, Ernesto, MacCallum, Robert M, Mao, Chunhong, Maslen, Gareth, Mbogo, Charles, McCarthy, Jenny, Michel, Kristin, Mitchell, Sara N, Moore, Wendy, Murphy, Katherine A, Naumenko, Anastasia N, Nolan, Tony, Novoa, Eva M, O'Loughlin, Samantha, Oringanje, Chioma, Oshaghi, Mohammad A, Pakpour, Nazzy, Papathanos, Philippos A, Peery, Ashley N, Povelones, Michael, Prakash, Anil, Price, David P, Rajaraman, Ashok, Reimer, Lisa J, Rinker, David C, Rokas, Antonis, Russell, Tanya L, Sagnon, N'Fale, Sharakhova, Maria V, Shea, Terrance, Simão, Felipe A, Simard, Frederic, Slotman, Michel A, Somboon, Pradya, Stegniy, Vladimir, Struchiner, Claudio J, Thomas, Gregg W C, Tojo, Marta, Topalis, Pantelis, Tubio, José M C, Unger, Maria F, Vontas, John, Walton, Catherine, Wilding, Craig S, Willis, Judith H, Wu, Yi-Chieh, Yan, Guiyun, Zdobnov, Evgeny M, Zhou, Xiaofan, Catteruccia, Flaminia, Christophides, George K, Collins, Frank H, Cornman, Robert S
Published in Science (American Association for the Advancement of Science) (02.01.2015)
Published in Science (American Association for the Advancement of Science) (02.01.2015)
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Journal Article
Genome-enabled insights into the biology of thrips as crop pests
Rotenberg, Dorith, Baumann, Aaron A, Ben-Mahmoud, Sulley, Christiaens, Olivier, Dermauw, Wannes, Ioannidis, Panagiotis, Jacobs, Chris Gc, Vargas Jentzsch, Iris M, Oliver, Jonathan E, Poelchau, Monica F, Rajarapu, Swapna Priya, Schneweis, Derek J, Snoeck, Simon, Taning, Clauvis Nt, Dong, Wei, Shirani M K Widana-Gamage, Daniel St Hughes, Murali, Shwetha C, Bailey, Sam, Bejerman, Nicolas E, Holmes, Christopher J, Jennings, Emily C, Rosendale, Andrew J, Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A, Cheng, Sammy, Childers, Christopher, Simão, Felipe A, Dietzgen, Ralf G, Hsu, Chao, Dinh, Huyen, Harsha Vardhan Doddapaneni, Dugan, Shannon, Han, Yi, Lee, Sandra L, Muzny, Donna M, Qu, Jiaxin, Worley, Kim C, Benoit, Joshua B, Friedrich, Markus, Jones, Jeffery W, Panfilio, Kristen A, Park, Yoonseong, Robertson, Hugh M, Smagghe, Guy, Ullman, Diane E, Maurijn Van Der Zee, Thomas Van Leeuwen, Veenstra, Jan A, Waterhouse, Robert M, Weirauch, Matthew T, Werren, John H, Whitfield, Anna E, Zdobnov, Evgeny M, Gibbs, Richard A, Richards, Stephen
Published in bioRxiv (13.02.2020)
Published in bioRxiv (13.02.2020)
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Paper
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
Manni, Mosè, Berkeley, Matthew R, Seppey, Mathieu, Simao, Felipe A, Zdobnov, Evgeny M
Year of Publication 22.06.2021
Year of Publication 22.06.2021
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Journal Article
The genome of the blind soil-dwelling and ancestrally wingless dipluran Campodea augens, a key reference hexapod for studying the emergence of insect innovations
Manni, Mosè, Simao, Felipe A, Robertson, Hugh M, Gabaglio, Marco A, Waterhouse, Robert M, Misof, Bernhard, Niehuis, Oliver, Szucsich, Nikolaus U, Zdobnov, Evgeny M
Published in bioRxiv (01.10.2019)
Published in bioRxiv (01.10.2019)
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Paper