Using influenza surveillance networks to estimate state-specific prevalence of SARS-CoV-2 in the United States
Silverman, Justin D, Hupert, Nathaniel, Washburne, Alex D
Published in Science Translational Medicine (29.07.2020)
Published in Science Translational Medicine (29.07.2020)
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Web Resource
A phylogenetic transform enhances analysis of compositional microbiota data
Silverman, Justin D, Washburne, Alex D, Mukherjee, Sayan, David, Lawrence A
Published in eLife (15.02.2017)
Published in eLife (15.02.2017)
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Journal Article
Measuring and mitigating PCR bias in microbiota datasets
Silverman, Justin D, Bloom, Rachael J, Jiang, Sharon, Durand, Heather K, Dallow, Eric, Mukherjee, Sayan, David, Lawrence A
Published in PLoS computational biology (01.07.2021)
Published in PLoS computational biology (01.07.2021)
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Journal Article
Establishing microbial composition measurement standards with reference frames
Morton, James T., Marotz, Clarisse, Washburne, Alex, Silverman, Justin, Zaramela, Livia S., Edlund, Anna, Zengler, Karsten, Knight, Rob
Published in Nature communications (20.06.2019)
Published in Nature communications (20.06.2019)
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Journal Article
Modeling the temporal dynamics of the gut microbial community in adults and infants
Shenhav, Liat, Furman, Ori, Briscoe, Leah, Thompson, Mike, Silverman, Justin D, Mizrahi, Itzhak, Halperin, Eran
Published in PLoS computational biology (01.06.2019)
Published in PLoS computational biology (01.06.2019)
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Journal Article
Addressing erroneous scale assumptions in microbe and gene set enrichment analysis
McGovern, Kyle C, Nixon, Michelle Pistner, Silverman, Justin D
Published in PLoS computational biology (01.11.2023)
Published in PLoS computational biology (01.11.2023)
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Journal Article
Naught all zeros in sequence count data are the same
Silverman, Justin D., Roche, Kimberly, Mukherjee, Sayan, David, Lawrence A.
Published in Computational and structural biotechnology journal (01.01.2020)
Published in Computational and structural biotechnology journal (01.01.2020)
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Journal Article
Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake
Holmes, Zachary C., Villa, Max M., Durand, Heather K., Jiang, Sharon, Dallow, Eric P., Petrone, Brianna L., Silverman, Justin D., Lin, Pao-Hwa, David, Lawrence A.
Published in Microbiome (29.07.2022)
Published in Microbiome (29.07.2022)
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Journal Article
Short-Chain Fatty Acid Production by Gut Microbiota from Children with Obesity Differs According to Prebiotic Choice and Bacterial Community Composition
Holmes, Zachary C, Silverman, Justin D, Dressman, Holly K, Wei, Zhengzheng, Dallow, Eric P, Armstrong, Sarah C, Seed, Patrick C, Rawls, John F, David, Lawrence A
Published in mBio (11.08.2020)
Published in mBio (11.08.2020)
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Journal Article
Decoding the olfactory map through targeted transcriptomics links murine olfactory receptors to glomeruli
Zhu, Kevin W., Burton, Shawn D., Nagai, Maira H., Silverman, Justin D., de March, Claire A., Wachowiak, Matt, Matsunami, Hiroaki
Published in Nature communications (01.09.2022)
Published in Nature communications (01.09.2022)
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Journal Article
Dynamic linear models guide design and analysis of microbiota studies within artificial human guts
Silverman, Justin D, Durand, Heather K, Bloom, Rachael J, Mukherjee, Sayan, David, Lawrence A
Published in Microbiome (12.11.2018)
Published in Microbiome (12.11.2018)
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Journal Article
Investigating antibiotic free feed additives for growth promotion in poultry: effects on performance and microbiota
Fonseca, Ana, Kenney, Sophia, Van Syoc, Emily, Bierly, Stephanie, Dini-Andreote, Francisco, Silverman, Justin, Boney, John, Ganda, Erika
Published in Poultry science (01.05.2024)
Published in Poultry science (01.05.2024)
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Journal Article
Changes in the type 2 diabetes gut mycobiome associate with metformin treatment across populations
Van Syoc, Emily, Nixon, Michelle Pistner, Silverman, Justin D, Luo, Yuhong, Gonzalez, Frank J, Elbere, Ilze, Klovins, Janis, Patterson, Andrew D, Rogers, Connie J, Ganda, Erika
Published in mBio (12.06.2024)
Published in mBio (12.06.2024)
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Journal Article
Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection
Midani, Firas S, Weil, Ana A, Chowdhury, Fahima, Begum, Yasmin A, Khan, Ashraful I, Debela, Meti D, Durand, Heather K, Reese, Aspen T, Nimmagadda, Sai N, Silverman, Justin D, Ellis, Crystal N, Ryan, Edward T, Calderwood, Stephen B, Harris, Jason B, Qadri, Firdausi, David, Lawrence A, LaRocque, Regina C
Published in The Journal of infectious diseases (13.07.2018)
Published in The Journal of infectious diseases (13.07.2018)
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Journal Article
Metformin modulates the gut microbiome in broiler breeder hens
Van Syoc, Emily, Weaver, Evelyn, Rogers, Connie J, Silverman, Justin D, Ramachandran, Ramesh, Ganda, Erika
Published in Frontiers in physiology (14.09.2022)
Published in Frontiers in physiology (14.09.2022)
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Journal Article
Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets
Washburne, Alex D, Silverman, Justin D, Leff, Jonathan W, Bennett, Dominic J, Darcy, John L, Mukherjee, Sayan, Fierer, Noah, David, Lawrence A
Published in PeerJ (San Francisco, CA) (09.02.2017)
Published in PeerJ (San Francisco, CA) (09.02.2017)
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Journal Article
Phosphorylation barcodes direct biased chemokine signaling at CXCR3
Eiger, Dylan S., Smith, Jeffrey S., Shi, Tujin, Stepniewski, Tomasz Maciej, Tsai, Chia-Feng, Honeycutt, Christopher, Boldizsar, Noelia, Gardner, Julia, Nicora, Carrie D., Moghieb, Ahmed M., Kawakami, Kouki, Choi, Issac, Hicks, Chloe, Zheng, Kevin, Warman, Anmol, Alagesan, Priya, Knape, Nicole M., Huang, Ouwen, Silverman, Justin D., Smith, Richard D., Inoue, Asuka, Selent, Jana, Jacobs, Jon M., Rajagopal, Sudarshan
Published in Cell chemical biology (20.04.2023)
Published in Cell chemical biology (20.04.2023)
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Journal Article
First-arterial-pass dual-energy CT for assessment of myocardial blood supply: do we need rest, stress, and delayed acquisition? Comparison with SPECT
Meinel, Felix G, De Cecco, Carlo N, Schoepf, U Joseph, Nance, Jr, John W, Silverman, Justin R, Flowers, Brian A, Henzler, Thomas
Published in Radiology (01.03.2014)
Published in Radiology (01.03.2014)
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