Dissecting peripheral protein-membrane interfaces
Tubiana, Thibault, Sillitoe, Ian, Orengo, Christine, Reuter, Nathalie
Published in PLoS computational biology (01.12.2022)
Published in PLoS computational biology (01.12.2022)
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Journal Article
CATH: increased structural coverage of functional space
Sillitoe, Ian, Bordin, Nicola, Dawson, Natalie, Waman, Vaishali P, Ashford, Paul, Scholes, Harry M, Pang, Camilla S M, Woodridge, Laurel, Rauer, Clemens, Sen, Neeladri, Abbasian, Mahnaz, Le Cornu, Sean, Lam, Su Datt, Berka, Karel, Varekova, Ivana Hutařová, Svobodova, Radka, Lees, Jon, Orengo, Christine A
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Journal Article
CATH: an expanded resource to predict protein function through structure and sequence
Dawson, Natalie L, Lewis, Tony E, Das, Sayoni, Lees, Jonathan G, Lee, David, Ashford, Paul, Orengo, Christine A, Sillitoe, Ian
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
MSAViewer: interactive JavaScript visualization of multiple sequence alignments
Yachdav, Guy, Wilzbach, Sebastian, Rauscher, Benedikt, Sheridan, Robert, Sillitoe, Ian, Procter, James, Lewis, Suzanna E, Rost, Burkhard, Goldberg, Tatyana
Published in Bioinformatics (Oxford, England) (15.11.2016)
Published in Bioinformatics (Oxford, England) (15.11.2016)
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Journal Article
VarSite: Disease variants and protein structure
Laskowski, Roman A., Stephenson, James D., Sillitoe, Ian, Orengo, Christine A., Thornton, Janet M.
Published in Protein science (01.01.2020)
Published in Protein science (01.01.2020)
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Journal Article
CATH: expanding the horizons of structure-based functional annotations for genome sequences
Sillitoe, Ian, Dawson, Natalie, Lewis, Tony E, Das, Sayoni, Lees, Jonathan G, Ashford, Paul, Tolulope, Adeyelu, Scholes, Harry M, Senatorov, Ilya, Bujan, Andra, Ceballos Rodriguez-Conde, Fatima, Dowling, Benjamin, Thornton, Janet, Orengo, Christine A
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
Comprehensive Collection and Prediction of ABC Transmembrane Protein Structures in the AI Era of Structural Biology
Tordai, Hedvig, Suhajda, Erzsebet, Sillitoe, Ian, Nair, Sreenath, Varadi, Mihaly, Hegedus, Tamas
Published in International journal of molecular sciences (09.08.2022)
Published in International journal of molecular sciences (09.08.2022)
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Journal Article
Contrastive learning on protein embeddings enlightens midnight zone
Heinzinger, Michael, Littmann, Maria, Sillitoe, Ian, Bordin, Nicola, Orengo, Christine, Rost, Burkhard
Published in NAR genomics and bioinformatics (01.06.2022)
Published in NAR genomics and bioinformatics (01.06.2022)
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Journal Article
The history of the CATH structural classification of protein domains
Sillitoe, Ian, Dawson, Natalie, Thornton, Janet, Orengo, Christine
Published in Biochimie (01.12.2015)
Published in Biochimie (01.12.2015)
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Journal Article
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
Sillitoe, Ian, Cuff, Alison L, Dessailly, Benoit H, Dawson, Natalie L, Furnham, Nicholas, Lee, David, Lees, Jonathan G, Lewis, Tony E, Studer, Romain A, Rentzsch, Robert, Yeats, Corin, Thornton, Janet M, Orengo, Christine A
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
Predicting human and viral protein variants affecting COVID-19 susceptibility and repurposing therapeutics
Waman, Vaishali P., Ashford, Paul, Lam, Su Datt, Sen, Neeladri, Abbasian, Mahnaz, Woodridge, Laurel, Goldtzvik, Yonathan, Bordin, Nicola, Wu, Jiaxin, Sillitoe, Ian, Orengo, Christine A.
Published in Scientific reports (20.06.2024)
Published in Scientific reports (20.06.2024)
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Journal Article
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms
Bordin, Nicola, Sillitoe, Ian, Nallapareddy, Vamsi, Rauer, Clemens, Lam, Su Datt, Waman, Vaishali P., Sen, Neeladri, Heinzinger, Michael, Littmann, Maria, Kim, Stephanie, Velankar, Sameer, Steinegger, Martin, Rost, Burkhard, Orengo, Christine
Published in Communications biology (08.02.2023)
Published in Communications biology (08.02.2023)
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Journal Article
Assigning protein function from domain-function associations using DomFun
Rojano, Elena, Jabato, Fernando M, Perkins, James R, Córdoba-Caballero, José, García-Criado, Federico, Sillitoe, Ian, Orengo, Christine, Ranea, Juan A G, Seoane-Zonjic, Pedro
Published in BMC bioinformatics (15.01.2022)
Published in BMC bioinformatics (15.01.2022)
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Journal Article
Gene3D: expanding the utility of domain assignments
Lam, Su Datt, Dawson, Natalie L, Das, Sayoni, Sillitoe, Ian, Ashford, Paul, Lee, David, Lehtinen, Sonja, Orengo, Christine A, Lees, Jonathan G
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
Tracing Evolution Through Protein Structures: Nature Captured in a Few Thousand Folds
Bordin, Nicola, Sillitoe, Ian, Lees, Jonathan G., Orengo, Christine
Published in Frontiers in molecular biosciences (10.05.2021)
Published in Frontiers in molecular biosciences (10.05.2021)
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Journal Article
Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies
Furnham, Nicholas, Sillitoe, Ian, Holliday, Gemma L, Cuff, Alison L, Laskowski, Roman A, Orengo, Christine A, Thornton, Janet M
Published in PLoS computational biology (01.03.2012)
Published in PLoS computational biology (01.03.2012)
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Journal Article
Anatomy of BioJS, an open source community for the life sciences
Yachdav, Guy, Goldberg, Tatyana, Wilzbach, Sebastian, Dao, David, Shih, Iris, Choudhary, Saket, Crouch, Steve, Franz, Max, García, Alexander, García, Leyla J, Grüning, Björn A, Inupakutika, Devasena, Sillitoe, Ian, Thanki, Anil S, Vieira, Bruno, Villaveces, José M, Schneider, Maria V, Lewis, Suzanna, Pettifer, Steve, Rost, Burkhard, Corpas, Manuel
Published in eLife (08.07.2015)
Published in eLife (08.07.2015)
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