Protocol for community‐created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure
Vargas, Fernando, Weldon, Kelly C., Sikora, Nicole, Wang, Mingxun, Zhang, Zheng, Gentry, Emily C., Panitchpakdi, Morgan W., Caraballo‐Rodríguez, Andrés Mauricio, Dorrestein, Pieter C., Jarmusch, Alan K.
Published in Rapid communications in mass spectrometry (30.05.2020)
Published in Rapid communications in mass spectrometry (30.05.2020)
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Journal Article
Mass spectrometry searches using MASST
Wang, Mingxun, Jarmusch, Alan K., Vargas, Fernando, Aksenov, Alexander A., Gauglitz, Julia M., Weldon, Kelly, Petras, Daniel, da Silva, Ricardo, Quinn, Robert, Melnik, Alexey V., van der Hooft, Justin J. J., Caraballo-Rodríguez, Andrés Mauricio, Nothias, Louis Felix, Aceves, Christine M., Panitchpakdi, Morgan, Brown, Elizabeth, Di Ottavio, Francesca, Sikora, Nicole, Elijah, Emmanuel O., Labarta-Bajo, Lara, Gentry, Emily C., Shalapour, Shabnam, Kyle, Kathleen E., Puckett, Sara P., Watrous, Jeramie D., Carpenter, Carolina S., Bouslimani, Amina, Ernst, Madeleine, Swafford, Austin D., Zúñiga, Elina I., Balunas, Marcy J., Klassen, Jonathan L., Loomba, Rohit, Knight, Rob, Bandeira, Nuno, Dorrestein, Pieter C.
Published in Nature biotechnology (2020)
Published in Nature biotechnology (2020)
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Journal Article
Enhancing untargeted metabolomics using metadata-based source annotation
Gauglitz, Julia M., West, Kiana A., Bittremieux, Wout, Williams, Candace L., Weldon, Kelly C., Panitchpakdi, Morgan, Di Ottavio, Francesca, Aceves, Christine M., Brown, Elizabeth, Sikora, Nicole C., Jarmusch, Alan K., Martino, Cameron, Tripathi, Anupriya, Meehan, Michael J., Dorrestein, Kathleen, Shaffer, Justin P., Coras, Roxana, Vargas, Fernando, Goldasich, Lindsay DeRight, Schwartz, Tara, Bryant, MacKenzie, Humphrey, Gregory, Johnson, Abigail J., Spengler, Katharina, Belda-Ferre, Pedro, Diaz, Edgar, McDonald, Daniel, Zhu, Qiyun, Elijah, Emmanuel O., Wang, Mingxun, Marotz, Clarisse, Sprecher, Kate E., Vargas-Robles, Daniela, Withrow, Dana, Ackermann, Gail, Herrera, Lourdes, Bradford, Barry J., Marques, Lucas Maciel Mauriz, Amaral, Juliano Geraldo, Silva, Rodrigo Moreira, Veras, Flavio Protasio, Cunha, Thiago Mattar, Oliveira, Rene Donizeti Ribeiro, Louzada-Junior, Paulo, Mills, Robert H., Piotrowski, Paulina K., Servetas, Stephanie L., Da Silva, Sandra M., Jones, Christina M., Lin, Nancy J., Lippa, Katrice A., Jackson, Scott A., Daouk, Rima Kaddurah, Galasko, Douglas, Dulai, Parambir S., Kalashnikova, Tatyana I., Wittenberg, Curt, Terkeltaub, Robert, Doty, Megan M., Kim, Jae H., Rhee, Kyung E., Beauchamp-Walters, Julia, Wright, Kenneth P., Dominguez-Bello, Maria Gloria, Manary, Mark, Oliveira, Michelli F., Boland, Brigid S., Lopes, Norberto Peporine, Guma, Monica, Swafford, Austin D., Dutton, Rachel J., Knight, Rob, Dorrestein, Pieter C.
Published in Nature biotechnology (01.12.2022)
Published in Nature biotechnology (01.12.2022)
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Journal Article
Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation
Gauglitz, Julia M., West, Kiana A., Bittremieux, Wout, Williams, Candace L., Weldon, Kelly C., Panitchpakdi, Morgan, Di Ottavio, Francesca, Aceves, Christine M., Brown, Elizabeth, Sikora, Nicole C., Jarmusch, Alan K., Martino, Cameron, Tripathi, Anupriya, Meehan, Michael J., Dorrestein, Kathleen, Shaffer, Justin P., Coras, Roxana, Vargas, Fernando, Goldasich, Lindsay DeRight, Schwartz, Tara, Bryant, MacKenzie, Humphrey, Gregory, Johnson, Abigail J., Spengler, Katharina, Belda-Ferre, Pedro, Diaz, Edgar, McDonald, Daniel, Zhu, Qiyun, Elijah, Emmanuel O., Wang, Mingxun, Marotz, Clarisse, Sprecher, Kate E., Vargas-Robles, Daniela, Withrow, Dana, Ackermann, Gail, Herrera, Lourdes, Bradford, Barry J., Marques, Lucas Maciel Mauriz, Amaral, Juliano Geraldo, Silva, Rodrigo Moreira, Veras, Flavio Protasio, Cunha, Thiago Mattar, Oliveira, Rene Donizeti Ribeiro, Louzada-Junior, Paulo, Mills, Robert H., Piotrowski, Paulina K., Servetas, Stephanie L., Da Silva, Sandra M., Jones, Christina M., Lin, Nancy J., Lippa, Katrice A., Jackson, Scott A., Daouk, Rima Kaddurah, Galasko, Douglas, Dulai, Parambir S., Kalashnikova, Tatyana I., Wittenberg, Curt, Terkeltaub, Robert, Doty, Megan M., Kim, Jae H., Rhee, Kyung E., Beauchamp-Walters, Julia, Wright, Kenneth P., Dominguez-Bello, Maria Gloria, Manary, Mark, Oliveira, Michelli F., Boland, Brigid S., Lopes, Norberto Peporine, Guma, Monica, Swafford, Austin D., Dutton, Rachel J., Knight, Rob, Dorrestein, Pieter C.
Published in Nature biotechnology (01.11.2023)
Published in Nature biotechnology (01.11.2023)
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Journal Article
ReDU: A Framework to Find and Re-analyze Public Mass Spectrometry Data
Jarmusch, Alan K., Wang, Mingxun, Aceves, Christine M., Advani, Rohit S., Aguirre, Shaden, Aksenov, Alexander A., Aleti, Gajender, Aron, Allegra T., Bauermeister, Anelize, Bolleddu, Sanjana, Bouslimani, Amina, Caraballo Rodriguez, Andres Mauricio, Chaar, Rama, Coras, Roxana, Elijah, Emmanuel O., Ernst, Madeleine, Gauglitz, Julia M., Gentry, Emily C., Husband, Makhai, Jarmusch, Scott A., Jones, Kenneth L., Kamenik, Zdenek, Gouellec, Audrey Le, Lu, Aileen, McCall, Laura-Isobel, McPhail, Kerry L., Meehan, Michael J., Melnik, Alexey V., Menezes, Riya C., Montoya Giraldo, Yessica Alejandra, Nguyen, Ngoc Hung, Nothias, Louis Felix, Nothias-Esposito, Mélissa, Panitchpakdi, Morgan, Petras, Daniel, Quinn, Robert, Sikora, Nicole, van der Hooft, Justin J.J., Vargas, Fernando, Vrbanac, Alison, Weldon, Kelly, Knight, Rob, Bandeira, Nuno, Dorrestein, Pieter C.
Published in Nature methods (17.08.2020)
Published in Nature methods (17.08.2020)
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Journal Article
Effects of Immunization With the Soil-Derived Bacterium Mycobacterium vaccae on Stress Coping Behaviors and Cognitive Performance in a "Two Hit" Stressor Model
Foxx, Christine L, Heinze, Jared D, González, Antonio, Vargas, Fernando, Baratta, Michael V, Elsayed, Ahmed I, Stewart, Jessica R, Loupy, Kelsey M, Arnold, Mathew R, Flux, M C, Sago, Saydie A, Siebler, Philip H, Milton, Lauren N, Lieb, Margaret W, Hassell, James E, Smith, David G, Lee, Kyo A K, Appiah, Sandra A, Schaefer, Evan J, Panitchpakdi, Morgan, Sikora, Nicole C, Weldon, Kelly C, Stamper, Christopher E, Schmidt, Dominic, Duggan, David A, Mengesha, Yosan M, Ogbaselassie, Mikale, Nguyen, Kadi T, Gates, Chloe A, Schnabel, K'loni, Tran, Linh, Jones, Joslynn D, Vitaterna, Martha H, Turek, Fred W, Fleshner, Monika, Dorrestein, Pieter C, Knight, Rob, Wright, Kenneth P, Lowry, Christopher A
Published in Frontiers in physiology (05.01.2021)
Published in Frontiers in physiology (05.01.2021)
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Journal Article
Protocol for Community-created Public MS/MS Reference Library Within the GNPS Infrastructure
Vargas, Fernando, Weldon, Kelly C, Sikora, Nicole, Wang, Mingxun, Zhang, Zheng, Gentry, Emily C, Panitchpakdi, Morgan W, Caraballo, Mauricio, Dorrestein, Pieter C, Jarmusch, Alan K
Published in bioRxiv (15.10.2019)
Published in bioRxiv (15.10.2019)
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Paper
Reference data based insights expand understanding of human metabolomes
Gauglitz, Julia M, Bittremieux, Wout, Williams, Candace L, Weldon, Kelly C, Panitchpakdi, Morgan W, Francesca Di Ottavio, Aceves, Christine M, Brown, Elizabeth, Sikora, Nicole C, Jarmusch, Alan K, Martino, Cameron, Tripathi, Anupriya, Sayyari, Erfan, Shaffer, Justin, Coras, Roxana, Vargas, Fernando, Goldasich, Lindsay Deright, Schwartz, Tara, Mackenzie, Bryant, Humphrey, Gregory, Johnson, Abigail J, Spengler, Katharina, Belda-Ferre, Pedro, Diaz, Edgar, Mcdonald, Daniel, Zhu, Qiyun, Nguyen, Dominic S, Elijah, Emmanuel O, Wang, Mingxun, Marotz, Clarisse, Sprecher, Kate E, Vargas-Robles, Daniela, Withrow, Dana, Ackermann, Gail, Herrera, Lourdes, Bradford, Barry J, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Veras, Flavio Protaso, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Louzada-Junior, Paulo, Mills, Robert H, Galasko, Douglas, Dulai, Parambir S, Wittenberg, Curt, Gonzalez, David J, Terkeltaub, Robert, Doty, Megan M, Kim, Jae H, Rhee, Kyung E, Beauchamp-Walters, Julia, Wright, Kenneth P, Dominguez Bello, Maria Gloria, Manary, Mark, Oliveira, Michelli F, Boland, Brigid S, Lopes, Norberto Peporine, Guma, Monica, Swafford, Austin D, Dutton, Rachel J, Knight, Rob, Dorrestein, Pieter C
Published in bioRxiv (11.07.2020)
Published in bioRxiv (11.07.2020)
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Paper
Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data
Jarmusch, Alan K, Wang, Mingxun, Aceves, Christine M, Advani, Rohit S, Aguire, Shaden, Aksenov, Alexander A, Aleti, Gajender, Aron, Allegra T, Bauermeister, Anelize, Bolleddu, Sanjana, Bouslimani, Amina, Caraballo-Rodriguez, Andres Mauricio, Chaar, Rama, Coras, Roxana, Elijah, Emmanuel O, Ernst, Madeleine, Gauglitz, Julia M, Gentry, Emily C, Husband, Makhai, Jarmusch, Scott A, Jones, Kenneth L, Kamenik, Zdenek, Audrey Le Gouellec, Lu, Aileen, Mccall, Laura-Isobel, Mcphail, Kerry L, Meehan, Michael J, Melnik, Alexey V, Menezes, Riya C, Montoya-Giraldo, Yessica Alejandra, Nguyen, Ngoc Hung, Louis Felix Nothias, Nothias-Esposito, Melissa, Morgan Panitchpakdi, Petras, Daniel, Quinn, Robert, Sikora, Nicole, Justin J J Van Der Hooft, Vargas, Fernando, Vrbanac, Alison, Weldon, Kelly, Knight, Rob, Bandeira, Nuno, Dorrestein, Pieter C
Published in bioRxiv (29.08.2019)
Published in bioRxiv (29.08.2019)
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Paper
MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data
Wang, Mingxun, Jarmusch, Alan K, Vargas, Fernando, Aksenov, Alexander A, Gauglitz, Julia, Weldon, Kelly, Petras, Daniel, Da Silva, Ricardo, Quinn, Robby, Melnik, Alexey, Justin Jj Van Der Hooft, Caraballo Rodriguez, Andres Mauricio, Louis Felix Nothias, Aceves, Christine M, Morgan Panitchpakdi, Brown, Elizabeth, Francesca Di Ottavio, Sikora, Nicole, Elijah, Emmanuel O, Labarta-Bajo, Lara, Gentry, Emily G, Shalapour, Shabnam, Kyle, Kathleen E, Puckett, Sara P, Watrous, Jeramie D, Carpenter, Carolina S, Bouslimani, Amina, Ernst, Madeleine, Swafford, Austin D, Zuniga, Elina I, Balunas, Marcy J, Klassen, Jonathan L, Loomba, Rohit, Knight, Rob, Bandeira, Nuno, Dorrestein, Pieter C
Published in bioRxiv (28.03.2019)
Published in bioRxiv (28.03.2019)
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Paper
Untargeted Mass Spectrometry-Based Metabolomics Tracks Molecular Changes in Raw and Processed Foods and Beverages
Gauglitz, Julia M, Aceves, Christine M, Aksenov, Alexander A, Aleti, Gajender, Almaliti, Jehad, Bouslimani, Amina, Brown, Elizabeth A, Campeau, Anaamika, Caraballo-Rodriguez, Andres Mauricio, Chaar, Rama, Da Silva, Ricardo R, Demko, Alyssa M, Francesca Di Ottavio, Elijah, Emmanuel, Ernst, Madeleine, Ferguson, L Paige, Holmes, Xavier, Justin Jj Van Der Hooft, Jarmusch, Alan K, Jiang, Lingjing, Kyo Bin Kang, Koester, Irina, Kwan, Brian, Bohan Ni, Li, Jie, Li, Yueying, Melnik, Alexey V, Molina-Santiago, Carlos, Oom, Aaron L, Panitchpakdi, Morgan W, Petras, Daniel, Quinn, Robert, Sikora, Nicole C, Spengler, Katharina, Teke, Bahar, Tripathi, Anupriya, Ul-Hasan, Sabah, Vargas, Fernando, Vrbanac, Alison, Vu, Anthony Q, Wang, Steven C, Weldon, Kelly, Wilson, Kayla, Wozniak, Jacob M, Yoon, Michael, Bandeira, Nuno, Dorrestein, Pieter C
Published in bioRxiv (15.06.2018)
Published in bioRxiv (15.06.2018)
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