Extension of the SUGRES-1P Coarse-Grained Model of Polysaccharides to Heparin
Danielsson, Annemarie, Samsonov, Sergey A., Liwo, Adam, Sieradzan, Adam K.
Published in Journal of chemical theory and computation (12.09.2023)
Published in Journal of chemical theory and computation (12.09.2023)
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A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. III. Determination of scale-consistent backbone-local and correlation potentials in the UNRES force field and force-field calibration and validation
Liwo, Adam, Sieradzan, Adam K, Lipska, Agnieszka G, Czaplewski, Cezary, Joung, InSuk, Żmudzińska, Wioletta, Hałabis, Anna, Ołdziej, Stanisław
Published in The Journal of chemical physics (21.04.2019)
Published in The Journal of chemical physics (21.04.2019)
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Mitochondrial potassium channels: A novel calcitriol target
Olszewska, Anna M, Sieradzan, Adam K, Bednarczyk, Piotr, Szewczyk, Adam, Żmijewski, Michał A
Published in Cellular & molecular biology letters (03.01.2022)
Published in Cellular & molecular biology letters (03.01.2022)
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A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions
Liwo, Adam, Baranowski, Maciej, Czaplewski, Cezary, Gołaś, Ewa, He, Yi, Jagieła, Dawid, Krupa, Paweł, Maciejczyk, Maciej, Makowski, Mariusz, Mozolewska, Magdalena A., Niadzvedtski, Andrei, Ołdziej, Stanisław, Scheraga, Harold A., Sieradzan, Adam K., Ślusarz, Rafał, Wirecki, Tomasz, Yin, Yanping, Zaborowski, Bartłomiej
Published in Journal of molecular modeling (01.08.2014)
Published in Journal of molecular modeling (01.08.2014)
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Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13
Fajardo, J. Eduardo, Shrestha, Rojan, Gil, Nelson, Belsom, Adam, Crivelli, Silvia N., Czaplewski, Cezary, Fidelis, Krzysztof, Grudinin, Sergei, Karasikov, Mikhail, Karczyńska, Agnieszka S., Kryshtafovych, Andriy, Leitner, Alexander, Liwo, Adam, Lubecka, Emilia A., Monastyrskyy, Bohdan, Pagès, Guillaume, Rappsilber, Juri, Sieradzan, Adam K., Sikorska, Celina, Trabjerg, Esben, Fiser, Andras
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
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Physics-Based Potentials for the Coupling between Backbone- and Side-Chain-Local Conformational States in the United Residue (UNRES) Force Field for Protein Simulations
Sieradzan, Adam K, Krupa, Paweł, Scheraga, Harold A, Liwo, Adam, Czaplewski, Cezary
Published in Journal of chemical theory and computation (10.02.2015)
Published in Journal of chemical theory and computation (10.02.2015)
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Peptide-based inhibitors targeting the PD-1/PD-L1 axis: potential immunotherapeutics for cancer
Bojko, Magdalena, Węgrzyn, Katarzyna, Sikorska, Emilia, Ciura, Piotr, Battin, Claire, Steinberger, Peter, Magiera-Mularz, Katarzyna, Dubin, Grzegorz, Kulesza, Adam, Sieradzan, Adam K., Spodzieja, Marta, Rodziewicz-Motowidło, Sylwia
Published in Translational oncology (01.04.2024)
Published in Translational oncology (01.04.2024)
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Structural Characterization of Covalently Stabilized Human Cystatin C Oligomers
Chrabąszczewska, Magdalena, Sieradzan, Adam K, Rodziewicz-Motowidło, Sylwia, Grubb, Anders, Dobson, Christopher M, Kumita, Janet R, Kozak, Maciej
Published in International journal of molecular sciences (15.08.2020)
Published in International journal of molecular sciences (15.08.2020)
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Lessons from application of the UNRES force field to predictions of structures of CASP10 targets
He, Yi, Mozolewska, Magdalena A., Krupa, Paweł, Sieradzan, Adam K., Wirecki, Tomasz K., Liwo, Adam, Kachlishvili, Khatuna, Rackovsky, Shalom, Jagieła, Dawid, Ślusarz, Rafał, Czaplewski, Cezary R., Ołdziej, Stanisław, Scheraga, Harold A.
Published in Proceedings of the National Academy of Sciences - PNAS (10.09.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (10.09.2013)
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Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment
Lubecka, Emilia A., Karczyńska, Agnieszka S., Lipska, Agnieszka G., Sieradzan, Adam K., Ziȩba, Karolina, Sikorska, Celina, Uciechowska, Urszula, Samsonov, Sergey A., Krupa, Paweł, Mozolewska, Magdalena A., Golon, Łukasz, Giełdoń, Artur, Czaplewski, Cezary, Ślusarz, Rafał, Ślusarz, Magdalena, Crivelli, Silvia N., Liwo, Adam
Published in Journal of molecular graphics & modelling (01.11.2019)
Published in Journal of molecular graphics & modelling (01.11.2019)
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A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. I. Backbone potentials of coarse-grained polypeptide chains
Sieradzan, Adam K, Makowski, Mariusz, Augustynowicz, Antoni, Liwo, Adam
Published in The Journal of chemical physics (28.03.2017)
Published in The Journal of chemical physics (28.03.2017)
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Mechanical Stability of Ribonuclease A Heavily Depends on the Redox Environment
Smardz, Pamela, Sieradzan, Adam K., Krupa, Paweł
Published in The journal of physical chemistry. B (25.08.2022)
Published in The journal of physical chemistry. B (25.08.2022)
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