Engineering potent live attenuated coronavirus vaccines by targeted inactivation of the immune evasive viral deubiquitinase
Myeni, Sebenzile K, Bredenbeek, Peter J, Knaap, Robert C M, Dalebout, Tim J, Morales, Shessy Torres, Sidorov, Igor A, Linger, Marissa E, Oreshkova, Nadia, van Zanen-Gerhardt, Sophie, Zander, Serge A L, Enjuanes, Luis, Sola, Isabel, Snijder, Eric J, Kikkert, Marjolein
Published in Nature communications (28.02.2023)
Published in Nature communications (28.02.2023)
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Potent cross-reactive neutralization of SARS coronavirus isolates by human monoclonal antibodies
Zhu, Zhongyu, Chakraborti, Samitabh, He, Yuxian, Roberts, Anjeanette, Sheahan, Tim, Xiao, Xiaodong, Hensley, Lisa E, Prabakaran, Ponraj, Rockx, Barry, Sidorov, Igor A, Corti, Davide, Vogel, Leatrice, Feng, Yang, Kim, Jae-Ouk, Wang, Lin-Fa, Baric, Ralph, Lanzavecchia, Antonio, Curtis, Kristopher M, Nabel, Gary J, Subbarao, Kanta, Jiang, Shibo, Dimitrov, Dimiter S
Published in Proceedings of the National Academy of Sciences - PNAS (17.07.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (17.07.2007)
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Non-Toxigenic Clostridioides difficile Strain E4 (NTCD-E4) Prevents Establishment of Primary C. difficile Infection by Epidemic PCR Ribotype 027 in an In Vitro Human Gut Model
Etifa, Perezimor, Rodríguez, César, Harmanus, Céline, Sanders, Ingrid M J G, Sidorov, Igor A, Mohammed, Olufunmilayo A, Savage, Emily, Timms, Andrew R, Freeman, Jane, Smits, Wiep Klaas, Wilcox, Mark H, Baines, Simon D
Published in Antibiotics (Basel) (22.02.2023)
Published in Antibiotics (Basel) (22.02.2023)
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Translating genomic exploration of the family Polyomaviridae into confident human polyomavirus detection
Kamminga, Sergio, Sidorov, Igor A., Tadesse, Michaël, van der Meijden, Els, de Brouwer, Caroline, Zaaijer, Hans L., Feltkamp, Mariet C.W., Gorbalenya, Alexander E.
Published in iScience (21.01.2022)
Published in iScience (21.01.2022)
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Longitudinal Monitoring of DNA Viral Loads in Transplant Patients Using Quantitative Metagenomic Next-Generation Sequencing
Carbo, Ellen C, Russcher, Anne, Kraakman, Margriet E M, de Brouwer, Caroline S, Sidorov, Igor A, Feltkamp, Mariet C W, Kroes, Aloys C M, Claas, Eric C J, de Vries, Jutte J C
Published in Pathogens (Basel) (11.02.2022)
Published in Pathogens (Basel) (11.02.2022)
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The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
Gorbalenya, Alexander E, Baker, Susan C, Baric, Ralph S, de Groot Raoul J, Drosten, Christian, Gulyaeva, Anastasia A, Haagmans, Bart L, Lauber, Chris, Leontovich, Andrey M, Neuman, Benjamin W, Penzar Dmitry, Perlman, Stanley, Poon Leo L M, Samborskiy, Dmitry V, Sidorov, Igor A, Sola, Isabel, Ziebuhr, John
Published in Nature Microbiology (01.04.2020)
Published in Nature Microbiology (01.04.2020)
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Book Review
Broadly Cross-Reactive HIV-1-Neutralizing Human Monoclonal Fab Selected for Binding to gp120-CD4-CCR5 Complexes
Moulard, Maxime, Phogat, Sanjay K., Shu, Yuuei, Labrijn, Aran F., Xiao, Xiaodong, Binley, James M., Zhang, Mei-Yun, Sidorov, Igor A., Broder, Christopher C., Robinson, James, Paul W. H. I. Parren, Burton, Dennis R., Dimitrov, Dimiter S.
Published in Proceedings of the National Academy of Sciences - PNAS (14.05.2002)
Published in Proceedings of the National Academy of Sciences - PNAS (14.05.2002)
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Naïve T-Cell Dynamics in Human Immunodeficiency Virus Type 1 Infection: Effects of Highly Active Antiretroviral Therapy Provide Insights into the Mechanisms of Naïve T-Cell Depletion
DI MASCIO, Michele, SERETI, Irini, SIDOROV, Igor A, DIMITROV, Dimiter S, POLIS, Michael A, KOVACS, Joseph A, MATTHEWS, Lynn T, NATARAJAN, Ven, ADELSBERGER, Joseph, LEMPICKI, Richard, YODER, Christian, JONES, Elizabeth, CHOW, Catherine, METCALF, Julia A
Published in Journal of Virology (01.03.2006)
Published in Journal of Virology (01.03.2006)
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Discovery of an essential nucleotidylating activity associated with a newly delineated conserved domain in the RNA polymerase-containing protein of all nidoviruses
Lehmann, Kathleen C, Gulyaeva, Anastasia, Zevenhoven-Dobbe, Jessika C, Janssen, George M C, Ruben, Mark, Overkleeft, Hermen S, van Veelen, Peter A, Samborskiy, Dmitry V, Kravchenko, Alexander A, Leontovich, Andrey M, Sidorov, Igor A, Snijder, Eric J, Posthuma, Clara C, Gorbalenya, Alexander E
Published in Nucleic Acids Research (30.09.2015)
Published in Nucleic Acids Research (30.09.2015)
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Identification and Characterization of a New Cross-Reactive Human Immunodeficiency Virus Type 1-Neutralizing Human Monoclonal Antibody
ZHANG, Mei-Yun, XIAODONG XIAO, BRODER, Christopher C, BURTON, Dennis R, QUINNAN, Gerald V, DIMITROV, Dimiter S, SIDOROV, Igor A, CHOUDHRY, Vidita, CHAM, Fatim, PENG FEI ZHANG, BOUMA, Peter, ZWICK, Michael, CHOUDHARY, Anil, MONTEFIORI, David C
Published in Journal of Virology (01.09.2004)
Published in Journal of Virology (01.09.2004)
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SNAD: Sequence Name Annotation-based Designer
Sidorov, Igor A, Reshetov, Denis A, Gorbalenya, Alexander E
Published in BMC bioinformatics (14.08.2009)
Published in BMC bioinformatics (14.08.2009)
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Torque teno virus loads after kidney transplantation predict allograft rejection but not viral infection
van Rijn, Aline L, Wunderink, Herman F, Sidorov, Igor A, de Brouwer, Caroline S, Kroes, Aloysius CM, Putter, Hein, de Vries, Aiko PJ, Rotmans, Joris I, Feltkamp, Mariet CW
Published in Journal of clinical virology (01.07.2021)
Published in Journal of clinical virology (01.07.2021)
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Characterization of SARS-CoV-2 replication in human H1299/ACE2 cells: A versatile and practical infection model for antiviral research and beyond
Salgado-Benvindo, Clarisse, Tas, Ali, Zevenhoven-Dobbe, Jessika C., van der Meer, Yvonne, Sidorov, Igor A., Leijs, Anouk A., Wanningen, Patrick, Gelderloos, Anne T., van Kasteren, Puck B., Snijder, Eric J., van Hemert, Martijn J.
Published in Antiviral research (01.07.2024)
Published in Antiviral research (01.07.2024)
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Improved diagnosis of viral encephalitis in adult and pediatric hematological patients using viral metagenomics
Carbo, Ellen C., Buddingh, Emilie P., Karelioti, Evita, Sidorov, Igor A., Feltkamp, Mariet C.W., Borne, Peter A. von dem, Verschuuren, Jan J.G.M., Kroes, Aloys C.M., Claas, Eric C.J., de Vries, Jutte J.C.
Published in Journal of clinical virology (01.09.2020)
Published in Journal of clinical virology (01.09.2020)
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Coronavirus discovery by metagenomic sequencing: a tool for pandemic preparedness
Carbo, Ellen C., Sidorov, Igor A., Zevenhoven-Dobbe, Jessika C., Snijder, Eric J., Claas, Eric C., Laros, Jeroen F.J., Kroes, Aloys C.M., de Vries, Jutte J.C.
Published in Journal of clinical virology (01.10.2020)
Published in Journal of clinical virology (01.10.2020)
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Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples
de Vries, Jutte J.C., Brown, Julianne R., Fischer, Nicole, Sidorov, Igor A., Morfopoulou, Sofia, Huang, Jiabin, Munnink, Bas B. Oude, Sayiner, Arzu, Bulgurcu, Alihan, Rodriguez, Christophe, Gricourt, Guillaume, Keyaerts, Els, Beller, Leen, Bachofen, Claudia, Kubacki, Jakub, Cordey, Samuel, Laubscher, Florian, Schmitz, Dennis, Beer, Martin, Hoeper, Dirk, Huber, Michael, Kufner, Verena, Zaheri, Maryam, Lebrand, Aitana, Papa, Anna, van Boheemen, Sander, Kroes, Aloys C.M., Breuer, Judith, Lopez-Labrador, F. Xavier, Claas, Eric C.J.
Published in Journal of clinical virology (01.08.2021)
Published in Journal of clinical virology (01.08.2021)
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Possibilities of increasing the interference immunity of radiothermograph applicator antennas for brain diagnostics
Leushin, Vitaly Yu, Gudkov, Alexander G., Porokhov, Igor O., Vesnin, Sergey G., Sedankin, Mikhail K., Sidorov, Igor A., Solov’ev, Yuriy V., Agasieva, Svetlana V., Chizhikov, Sergey V.
Published in Sensors and actuators. A. Physical. (16.04.2022)
Published in Sensors and actuators. A. Physical. (16.04.2022)
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Multicenter benchmarking of short and long read wet lab protocols for clinical viral metagenomics
Lopez-Labrador, F. Xavier, Huber, Michael, Sidorov, Igor A., Brown, Julianne R., Cuypers, Lize, Laenen, Lies, Vanmechelen, Bert, Maes, Piet, Fischer, Nicole, Pichler, Ian, Storey, Nathaniel, Atkinson, Laura, Schmutz, Stefan, Kufner, Verena, van Boheemen, Sander, Mulders, Claudia E., Grundhoff, Adam, Blümke, Patrick, Robitaille, Alexis, Cinek, Ondrej, Hubáčková, Klára, Mourik, Kees, Boers, Stefan A., Stauber, Lea, Salmona, Maud, Cappy, Pierre, Ramette, Alban, Franze’, Alessandra, LeGoff, Jerome, Claas, Eric C.J., Rodriguez, Christophe, de Vries, Jutte J.C.
Published in Journal of clinical virology (01.08.2024)
Published in Journal of clinical virology (01.08.2024)
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Viral metagenomic sequencing in a cohort of international travellers returning with febrile illness
Reyes, Alhena, Carbo, Ellen C., Harinxma thoe Slooten, Johan S. van, Kraakman, Margriet E.M., Sidorov, Igor A., Claas, Eric C.J., Kroes, Aloys C.M., Visser, Leo G., de, Jutte J.C. Vries
Published in Journal of clinical virology (01.10.2021)
Published in Journal of clinical virology (01.10.2021)
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