DBnorm as an R package for the comparison and selection of appropriate statistical methods for batch effect correction in metabolomic studies
Bararpour, Nasim, Gilardi, Federica, Carmeli, Cristian, Sidibe, Jonathan, Ivanisevic, Julijana, Caputo, Tiziana, Augsburger, Marc, Grabherr, Silke, Desvergne, Béatrice, Guex, Nicolas, Bochud, Murielle, Thomas, Aurelien
Published in Scientific reports (11.03.2021)
Published in Scientific reports (11.03.2021)
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Beneficial Effects of Human Mesenchymal Stromal Cells on Porcine Hepatocyte Viability and Albumin Secretion
Schuurman, Henk-Jan, Gerber-Lemaire, Sandrine, Gonelle-Gispert, Carmen, Buhler, Leo H., Sidibe, Jonathan, Meyer, Jeremy, Meier, Raphael P. H., Passemard, Solène, Noverraz, François, Szabó, Luca, Pimenta, Joel, Montanari, Elisa, Thomas, Aurelien
Published in Journal of Immunology Research (01.01.2018)
Published in Journal of Immunology Research (01.01.2018)
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CMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules
Domingo-Almenara, Xavier, Montenegro-Burke, J. Rafael, Ivanisevic, Julijana, Thomas, Aurelien, Sidibé, Jonathan, Teav, Tony, Guijas, Carlos, Aisporna, Aries E., Rinehart, Duane, Hoang, Linh, Nordström, Anders, Gómez-Romero, Maria, Whiley, Luke, Lewis, Matthew R., Nicholson, Jeremy K., Benton, H. Paul, Siuzdak, Gary
Published in Nature methods (01.09.2018)
Published in Nature methods (01.09.2018)
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XCMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules
Domingo-Almenara, Xavier, Montenegro-Burke, J Rafael, Ivanisevic, Julijana, Thomas, Aurelien, Sidibé, Jonathan, Teav, Tony, Guijas, Carlos, Aisporna, Aries E, Rinehart, Duane, Hoang, Linh, Nordström, Anders, Gómez-Romero, María, Whiley, Luke, Lewis, Matthew R, Nicholson, Jeremy K, Benton, H Paul, Siuzdak, Gary
Published in Nature methods (01.09.2018)
Published in Nature methods (01.09.2018)
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Randomly controlled drivers using minimally invasive sampling: assessment of drug prevalence in Western Switzerland over two time periods
Joye, Timothée, Déglon, Julien, Donzé, Nicolas, Gilardi, Federica, Sidibé, Jonathan, Favrat, Bernard, Augsburger, Marc, Thomas, Aurélien
Published in BMC public health (28.12.2022)
Published in BMC public health (28.12.2022)
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Liquid chromatography-high resolution mass spectrometry for broad-spectrum drug screening of dried blood spot as microsampling procedure
Joye, Timothée, Sidibé, Jonathan, Déglon, Julien, Karmime, Abderrahim, Sporkert, Frank, Widmer, Christèle, Favrat, Bernard, Lescuyer, Pierre, Augsburger, Marc, Thomas, Aurélien
Published in Analytica chimica acta (31.07.2019)
Published in Analytica chimica acta (31.07.2019)
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People living with HIV display increased anti-apolipoprotein A1 auto-antibodies, inflammation, and kynurenine metabolites: a case-control study
Frias, Miguel A, Pagano, Sabrina, Bararpour, Nasim, Sidibé, Jonathan, Kamau, Festus, Fétaud-Lapierre, Vanessa, Hudson, Peter, Thomas, Aurélien, Lecour, Sandrine, Strijdom, Hans, Vuilleumier, Nicolas
Published in Frontiers in cardiovascular medicine (13.02.2024)
Published in Frontiers in cardiovascular medicine (13.02.2024)
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Metabolomic alteration induced by psychotropic drugs: Short‐term metabolite profile as a predictor of weight gain evolution
Lenski, Marie, Sidibé, Jonathan, Gholam, Mehdi, Hennart, Benjamin, Dubath, Céline, Augsburger, Marc, Gunten, Armin, Conus, Philippe, Allorge, Delphine, Thomas, Aurelien, Eap, Chin B.
Published in Clinical and translational science (01.11.2021)
Published in Clinical and translational science (01.11.2021)
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Journal Article
Driving Under the Influence of Drugs: A Single Parallel Monitoring-Based Quantification Approach on Whole Blood
Joye, Timothée, Rocher, Katell, Déglon, Julien, Sidibé, Jonathan, Favrat, Bernard, Augsburger, Marc, Thomas, Aurélien
Published in Frontiers in chemistry (26.08.2020)
Published in Frontiers in chemistry (26.08.2020)
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Sphingosine‐1‐phosphate as a key player of insulin secretion induced by high‐density lipoprotein treatment
Brulhart‐Meynet, Marie‐Claude, Thomas, Aurélien, Sidibé, Jonathan, Visentin, Florian, Dusaulcy, Rodolphe, Schwitzgebel, Valérie, Pataky, Zoltan, Philippe, Jacques, Vuilleumier, Nicolas, James, Richard W., Gosmain, Yvan, Frias, Miguel A.
Published in Physiological reports (01.03.2021)
Published in Physiological reports (01.03.2021)
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Journal Article
Visualization and normalization of drift effect across batches in metabolome-wide association studies
Bararpour, Nasim, Gilardi, Federica, Carmeli, Cristian, Sidibe, Jonathan, Ivanisevic, Julijana, Caputo, Tiziana, Augsburger, Marc, Grabherr, Silke, Desvergne, Beatrice, Guex, Nicolas, Bochud, Murielle, Thomas, Aurelien
Published in bioRxiv (04.02.2020)
Published in bioRxiv (04.02.2020)
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Paper
METLIN–MRM: a cloud library and public resource for targeted analysis of small molecules
Domingo-Almenara, Xavier, Montenegro-Burke, J. Rafael, Ivanisevic, Julijana, Thomas, Aurelien, Sidibe, Jonathan, Teav, Tony, Guijas, Carlos, Aisporna, Aries E., Rinehart, Duane, Hoang, Linh, Nordstrom, Anders, Gomez-Romero, Maria, Whiley, Luke, Lewis, Mathew R., Nicholson, Jeremy K., Benton, H. Paul, Siuzdak, Gary
Published in Nature methods (27.08.2018)
Published in Nature methods (27.08.2018)
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Journal Article
Detection and Identification of Reactive Drug Metabolites Leading to Idiosyncratic Toxicity: Lapatinib as a Case Example
Mohamed, Rayane, Storelli, Flavia, Sidibe, Jonathan, Bararpour, Nasim, Desmeules, Jules, Ausburger, Marc, Daali, Youssef, Thomas, A
Published in Journal of drug metabolism & toxicology (2018)
Published in Journal of drug metabolism & toxicology (2018)
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