Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries
Asplund, M., Kjartansdóttir, K.R., Mollerup, S., Vinner, L., Fridholm, H., Herrera, J.A.R., Friis-Nielsen, J., Hansen, T.A., Jensen, R.H., Nielsen, I.B., Richter, S.R., Rey-Iglesia, A., Matey-Hernandez, M.L., Alquezar-Planas, D.E., Olsen, P.V.S., Sicheritz-Pontén, T., Willerslev, E., Lund, O., Brunak, S., Mourier, T., Nielsen, L.P., Izarzugaza, J.M.G., Hansen, A.J.
Published in Clinical microbiology and infection (01.10.2019)
Published in Clinical microbiology and infection (01.10.2019)
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Journal Article
Trichomonas vaginalis surface proteins: a view from the genome
Hirt, R.P, Noel, C.J, Sicheritz-Ponten, T, Tachezy, J, Fiori, P-L
Published in Trends in parasitology (01.11.2007)
Published in Trends in parasitology (01.11.2007)
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The genus burkholderia: analysis of 56 genomic sequences
Ussery, D W, Kiil, K, Lagesen, K, Sicheritz-Pontén, T, Bohlin, J, Wassenaar, T M
Published in Genome dynamics (01.01.2009)
Published in Genome dynamics (01.01.2009)
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Journal Article
Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients
Wesołowska-Andersen, A, Borst, L, Dalgaard, M D, Yadav, R, Rasmussen, K K, Wehner, P S, Rasmussen, M, Ørntoft, T F, Nordentoft, I, Koehler, R, Bartram, C R, Schrappe, M, Sicheritz-Ponten, T, Gautier, L, Marquart, H, Madsen, H O, Brunak, S, Stanulla, M, Gupta, R, Schmiegelow, K
Published in Leukemia (01.02.2015)
Published in Leukemia (01.02.2015)
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Journal Article
The genome sequence of Rickettsia prowazekii and the origin of mitochondria
Kurland, Charles G, Andersson, Siv G. E, Zomorodipour, Alireza, Andersson, Jan O, Sicheritz-Pontén, Thomas, Alsmark, U. Cecilia M, Podowski, Raf M, Näslund, A. Kristina, Eriksson, Ann-Sofie, Winkler, Herbert H
Published in Nature (London) (12.11.1998)
Published in Nature (London) (12.11.1998)
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Journal Article
Structure and Content of the Entamoeba histolytica Genome
Clark, C.G., Alsmark, U.C.M., Tazreiter, M., Saito‐Nakano, Y., Ali, V., Marion, S., Weber, C., Mukherjee, C., Bruchhaus, I., Tannich, E., Leippe, M., Sicheritz‐Ponten, T., Foster, P.G., Samuelson, J., Noël, C.J., Hirt, R.P., Embley, T.M., Gilchrist, C.A., Mann, B.J., Singh, U., Ackers, J.P., Bhattacharya, S., Bhattacharya, A., Lohia, A., Guillén, N., Duchêne, M., Nozaki, T., Hall, N.
Published in Advances in Parasitology (2007)
Published in Advances in Parasitology (2007)
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Book Chapter
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Cost-effective multiplexing before capture allows screening of 25 000 clinically relevant SNPs in childhood acute lymphoblastic leukemia
WESOLOWSKA, A, DALGAARD, M. D, TOMMERUP, N, BRUNAK, S, SICHERITZ-PONTEN, T, LEFFERS, H, SCHMIEGELOW, K, GUPTA, R, BORST, L, GAUTIER, L, BAK, M, WEINHOLD, N, NIELSEN, B. F, HELT, L. R, AUDOUZE, K, NERSTING, J
Published in Leukemia (01.06.2011)
Published in Leukemia (01.06.2011)
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Journal Article
Hybridization capture using short PCR products enriches small genomes by capturing flanking sequences (CapFlank)
Tsangaras, Kyriakos, Wales, Nathan, Sicheritz-Pontén, Thomas, Rasmussen, Simon, Michaux, Johan, Ishida, Yasuko, Morand, Serge, Kampmann, Marie-Louise, Gilbert, M Thomas P, Greenwood, Alex D
Published in PloS one (02.10.2014)
Published in PloS one (02.10.2014)
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Web Resource
Richness of human gut microbiome correlates with metabolic markers
Le Chatelier, Emmanuelle, Nielsen, Trine, Qin, Junjie, Prifti, Edi, Hildebrand, Falk, Falony, Gwen, Almeida, Mathieu, Arumugam, Manimozhiyan, Batto, Jean-Michel, Kennedy, Sean, Leonard, Pierre, Li, Junhua, Burgdorf, Kristoffer, Grarup, Niels, Jørgensen, Torben, Brandslund, Ivan, Nielsen, Henrik Bjørn, Juncker, Agnieszka S, Bertalan, Marcelo, Levenez, Florence, Pons, Nicolas, Rasmussen, Simon, Sunagawa, Shinichi, Tap, Julien, Tims, Sebastian, Zoetendal, Erwin G, Brunak, Søren, Clément, Karine, Doré, Joël, Kleerebezem, Michiel, Kristiansen, Karsten, Renault, Pierre, Sicheritz-Ponten, Thomas, de Vos, Willem M, Zucker, Jean-Daniel, Raes, Jeroen, Hansen, Torben, Bork, Peer, Wang, Jun, Ehrlich, S Dusko, Pedersen, Oluf
Published in Nature (London) (29.08.2013)
Published in Nature (London) (29.08.2013)
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Journal Article
Interspecific Gene Flow Shaped the Evolution of the Genus Canis
Gopalakrishnan, Shyam, Sinding, Mikkel-Holger S., Ramos-Madrigal, Jazmín, Niemann, Jonas, Samaniego Castruita, Jose A., Vieira, Filipe G., Carøe, Christian, Montero, Marc de Manuel, Kuderna, Lukas, Serres, Aitor, González-Basallote, Víctor Manuel, Liu, Yan-Hu, Wang, Guo-Dong, Marques-Bonet, Tomas, Mirarab, Siavash, Fernandes, Carlos, Gaubert, Philippe, Koepfli, Klaus-Peter, Budd, Jane, Rueness, Eli Knispel, Sillero, Claudio, Heide-Jørgensen, Mads Peter, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P.
Published in Current biology (05.11.2018)
Published in Current biology (05.11.2018)
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Journal Article
The population genomic legacy of the second plague pandemic
Gopalakrishnan, Shyam, Ebenesersdóttir, S. Sunna, Lundstrøm, Inge K.C., Turner-Walker, Gordon, Moore, Kristjan H.S., Luisi, Pierre, Margaryan, Ashot, Martin, Michael D., Ellegaard, Martin Rene, Magnússon, Ólafur þ., Sigurðsson, Ásgeir, Snorradóttir, Steinunn, Magnúsdóttir, Droplaug N., Laffoon, Jason E., van Dorp, Lucy, Liu, Xiaodong, Moltke, Ida, Ávila-Arcos, María C., Schraiber, Joshua G., Rasmussen, Simon, Juan, David, Gelabert, Pere, de-Dios, Toni, Fotakis, Anna K., Iraeta-Orbegozo, Miren, Vågene, Åshild J., Denham, Sean Dexter, Christophersen, Axel, Stenøien, Hans K., Vieira, Filipe G., Liu, Shanlin, Günther, Torsten, Kivisild, Toomas, Moseng, Ole Georg, Skar, Birgitte, Cheung, Christina, Sandoval-Velasco, Marcela, Wales, Nathan, Schroeder, Hannes, Campos, Paula F., Guðmundsdóttir, Valdís B., Sicheritz-Ponten, Thomas, Petersen, Bent, Halgunset, Jostein, Gilbert, Edmund, Cavalleri, Gianpiero L., Hovig, Eivind, Kockum, Ingrid, Olsson, Tomas, Alfredsson, Lars, Hansen, Thomas F., Werge, Thomas, Willerslev, Eske, Balloux, Francois, Marques-Bonet, Tomas, Lalueza-Fox, Carles, Nielsen, Rasmus, Stefánsson, Kári, Helgason, Agnar, Gilbert, M. Thomas P.
Published in Current biology (07.11.2022)
Published in Current biology (07.11.2022)
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The genome of the protist parasite Entamoeba histolytica
Loftus, Brendan, Anderson, Iain, Davies, Rob, Alsmark, U. Cecilia M, Samuelson, John, Amedeo, Paolo, Roncaglia, Paola, Berriman, Matt, Hirt, Robert P, Mann, Barbara J, Nozaki, Tomo, Suh, Bernard, Pop, Mihai, Duchene, Michael, Ackers, John, Tannich, Egbert, Leippe, Matthias, Hofer, Margit, Bruchhaus, Iris, Willhoeft, Ute, Bhattacharya, Alok, Chillingworth, Tracey, Churcher, Carol, Hance, Zahra, Harris, Barbara, Harris, David, Jagels, Kay, Moule, Sharon, Mungall, Karen, Ormond, Doug, Squares, Rob, Whitehead, Sally, Quail, Michael A, Rabbinowitsch, Ester, Norbertczak, Halina, Price, Claire, Wang, Zheng, Guillén, Nancy, Gilchrist, Carol, Stroup, Suzanne E, Bhattacharya, Sudha, Lohia, Anuradha, Foster, Peter G, Sicheritz-Ponten, Thomas, Weber, Christian, Singh, Upinder, Mukherjee, Chandrama, El-Sayed, Najib M, Petri, William A, Clark, C. Graham, Embley, T. Martin, Barrell, Bart, Fraser, Claire M, Hall, Neil
Published in Nature (24.02.2005)
Published in Nature (24.02.2005)
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Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins
Diella, Francesca, Cameron, Scott, Gemünd, Christine, Linding, Rune, Via, Allegra, Kuster, Bernhard, Sicheritz-Pontén, Thomas, Blom, Nikolaj, Gibson, Toby J
Published in BMC bioinformatics (22.06.2004)
Published in BMC bioinformatics (22.06.2004)
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