Advanced Heat Map and Clustering Analysis Using Heatmap3
Zhao, Shilin, Guo, Yan, Sheng, Quanhu, Shyr, Yu
Published in BioMed research international (01.01.2014)
Published in BioMed research international (01.01.2014)
Get full text
Journal Article
Preoperative and Postoperative Systemic Therapy for Operable Non-Small-Cell Lung Cancer
Chaft, Jamie E, Shyr, Yu, Sepesi, Boris, Forde, Patrick M
Published in Journal of clinical oncology (20.02.2022)
Published in Journal of clinical oncology (20.02.2022)
Get full text
Journal Article
Aberrant FGFR signaling mediates resistance to CDK4/6 inhibitors in ER+ breast cancer
Formisano, Luigi, Lu, Yao, Servetto, Alberto, Hanker, Ariella B., Jansen, Valerie M., Bauer, Joshua A., Sudhan, Dhivya R., Guerrero-Zotano, Angel L., Croessmann, Sarah, Guo, Yan, Ericsson, Paula Gonzalez, Lee, Kyung-min, Nixon, Mellissa J., Schwarz, Luis J., Sanders, Melinda E., Dugger, Teresa C., Cruz, Marcelo Rocha, Behdad, Amir, Cristofanilli, Massimo, Bardia, Aditya, O’Shaughnessy, Joyce, Nagy, Rebecca J., Lanman, Richard B., Solovieff, Nadia, He, Wei, Miller, Michelle, Su, Fei, Shyr, Yu, Mayer, Ingrid A., Balko, Justin M., Arteaga, Carlos L.
Published in Nature communications (26.03.2019)
Published in Nature communications (26.03.2019)
Get full text
Journal Article
Two improved k-means algorithms
Yu, Shyr-Shen, Chu, Shao-Wei, Wang, Chuin-Mu, Chan, Yung-Kuan, Chang, Ting-Cheng
Published in Applied soft computing (01.07.2018)
Published in Applied soft computing (01.07.2018)
Get full text
Journal Article
Refinement of Triple-Negative Breast Cancer Molecular Subtypes: Implications for Neoadjuvant Chemotherapy Selection
Lehmann, Brian D, Jovanović, Bojana, Chen, Xi, Estrada, Monica V, Johnson, Kimberly N, Shyr, Yu, Moses, Harold L, Sanders, Melinda E, Pietenpol, Jennifer A
Published in PloS one (16.06.2016)
Published in PloS one (16.06.2016)
Get full text
Journal Article
Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies
Lehmann, Brian D, Bauer, Joshua A, Chen, Xi, Sanders, Melinda E, Chakravarthy, A Bapsi, Shyr, Yu, Pietenpol, Jennifer A
Published in The Journal of clinical investigation (01.07.2011)
Published in The Journal of clinical investigation (01.07.2011)
Get full text
Journal Article
HACER: an atlas of human active enhancers to interpret regulatory variants
Wang, Jing, Dai, Xizhen, Berry, Lynne D, Cogan, Joy D, Liu, Qi, Shyr, Yu
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
Get full text
Journal Article
Genome measures used for quality control are dependent on gene function and ancestry
Wang, Jing, Raskin, Leon, Samuels, David C, Shyr, Yu, Guo, Yan
Published in Bioinformatics (01.02.2015)
Published in Bioinformatics (01.02.2015)
Get full text
Journal Article
beRBP: binding estimation for human RNA-binding proteins
Yu, Hui, Wang, Jing, Sheng, Quanhu, Liu, Qi, Shyr, Yu
Published in Nucleic acids research (18.03.2019)
Published in Nucleic acids research (18.03.2019)
Get full text
Journal Article
Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis
Guo, Yan, Dai, Yulin, Yu, Hui, Zhao, Shilin, Samuels, David C., Shyr, Yu
Published in Genomics (San Diego, Calif.) (01.03.2017)
Published in Genomics (San Diego, Calif.) (01.03.2017)
Get full text
Journal Article
Illumina human exome genotyping array clustering and quality control
Guo, Yan, He, Jing, Zhao, Shilin, Wu, Hui, Zhong, Xue, Sheng, Quanhu, Samuels, David C, Shyr, Yu, Long, Jirong
Published in Nature protocols (01.11.2014)
Published in Nature protocols (01.11.2014)
Get full text
Journal Article
Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data
Guo, Yan, Sheng, Quanhu, Li, Jiang, Ye, Fei, Samuels, David C, Shyr, Yu
Published in PloS one (20.08.2013)
Published in PloS one (20.08.2013)
Get full text
Journal Article
Melanoma-specific MHC-II expression represents a tumour-autonomous phenotype and predicts response to anti-PD-1/PD-L1 therapy
Johnson, Douglas B., Estrada, Monica V., Salgado, Roberto, Sanchez, Violeta, Doxie, Deon B., Opalenik, Susan R., Vilgelm, Anna E., Feld, Emily, Johnson, Adam S., Greenplate, Allison R., Sanders, Melinda E., Lovly, Christine M., Frederick, Dennie T., Kelley, Mark C., Richmond, Ann, Irish, Jonathan M., Shyr, Yu, Sullivan, Ryan J., Puzanov, Igor, Sosman, Jeffrey A., Balko, Justin M.
Published in Nature communications (29.01.2016)
Published in Nature communications (29.01.2016)
Get full text
Journal Article
Using Multiplexed Assays of Oncogenic Drivers in Lung Cancers to Select Targeted Drugs
Kris, Mark G, Johnson, Bruce E, Berry, Lynne D, Kwiatkowski, David J, Iafrate, A. John, Wistuba, Ignacio I, Varella-Garcia, Marileila, Franklin, Wilbur A, Aronson, Samuel L, Su, Pei-Fang, Shyr, Yu, Camidge, D. Ross, Sequist, Lecia V, Glisson, Bonnie S, Khuri, Fadlo R, Garon, Edward B, Pao, William, Rudin, Charles, Schiller, Joan, Haura, Eric B, Socinski, Mark, Shirai, Keisuke, Chen, Heidi, Giaccone, Giuseppe, Ladanyi, Marc, Kugler, Kelly, Minna, John D, Bunn, Paul A
Published in JAMA : the journal of the American Medical Association (21.05.2014)
Published in JAMA : the journal of the American Medical Association (21.05.2014)
Get full text
Journal Article
Survival in BRAF V600–Mutant Advanced Melanoma Treated with Vemurafenib
Sosman, Jeffrey A, Kim, Kevin B, Schuchter, Lynn, Gonzalez, Rene, Pavlick, Anna C, Weber, Jeffrey S, McArthur, Grant A, Hutson, Thomas E, Moschos, Stergios J, Flaherty, Keith T, Hersey, Peter, Kefford, Richard, Lawrence, H. Jeffrey, Lawrence, Donald, Puzanov, Igor, Lewis, Karl D, Amaravadi, Ravi K, Chmielowski, Bartosz, Shyr, Yu, Ye, Fei, Li, Jiang, Nolop, Keith B, Lee, Richard J, Joe, Andrew K, Ribas, Antoni
Published in The New England journal of medicine (23.02.2012)
Published in The New England journal of medicine (23.02.2012)
Get full text
Journal Article
RnaSeqSampleSize: real data based sample size estimation for RNA sequencing
Zhao, Shilin, Li, Chung-I, Guo, Yan, Sheng, Quanhu, Shyr, Yu
Published in BMC bioinformatics (30.05.2018)
Published in BMC bioinformatics (30.05.2018)
Get full text
Journal Article