Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis
den Bakker, Henk C, Allard, Marc W, Bopp, Dianna, Brown, Eric W, Fontana, John, Iqbal, Zamin, Kinney, Aristea, Limberger, Ronald, Musser, Kimberlee A, Shudt, Matthew, Strain, Errol, Wiedmann, Martin, Wolfgang, William J
Published in Emerging infectious diseases (01.08.2014)
Published in Emerging infectious diseases (01.08.2014)
Get full text
Journal Article
Detection and Genetic Characterization of Adenovirus Type 14 Strain in Students with Influenza-Like Illness, New York, USA, 2014-2015
Lamson, Daryl M, Kajon, Adriana, Shudt, Matthew, Girouard, Gabriel, St George, Kirsten
Published in Emerging infectious diseases (01.07.2017)
Published in Emerging infectious diseases (01.07.2017)
Get full text
Journal Article
Implementation of a high-throughput whole genome sequencing approach with the goal of maximizing efficiency and cost effectiveness to improve public health
Dickinson, Michelle C, Wirth, Samantha E, Baker, Deborah, Kidney, Anna M, Mitchell, Kara K, Nazarian, Elizabeth J, Shudt, Matthew, Thompson, Lisa M, Gubbala Venkata, Sai Laxmi, Musser, Kimberlee A, Mingle, Lisa
Published in Microbiology spectrum (02.04.2024)
Published in Microbiology spectrum (02.04.2024)
Get full text
Journal Article
Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota
Petrone, Mary E, Rothman, Jessica E, Breban, Mallery I, Ott, Isabel M, Russell, Alexis, Lasek-Nesselquist, Erica, Badr, Hamada, Kelly, Kevin, Omerza, Greg, Renzette, Nicholas, Watkins, Anne E, Kalinich, Chaney C, Alpert, Tara, Brito, Anderson F, Earnest, Rebecca, Tikhonova, Irina R, Castaldi, Christopher, Kelly, John P, Shudt, Matthew, Plitnick, Jonathan, Schneider, Erasmus, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Altajar, Ahmad, Pearson, Claire, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, Niccolai, Linda, Wilson, Madeline S, Anderson, Margaret L, Wang, Jianhui, Liu, Chen, Hui, Pei, Mane, Shrikant, Taylor, Bradford P, Hanage, William P, Landry, Marie L, Peaper, David R, Bilguvar, Kaya, Fauver, Joseph R, Vogels, Chantal B F, Gardner, Lauren M, Pitzer, Virginia E, St George, Kirsten, Adams, Mark D, Grubaugh, Nathan D
Published in Communications biology (11.05.2022)
Published in Communications biology (11.05.2022)
Get full text
Journal Article
Influenza Antiviral Resistance Testing in New York and Wisconsin, 2006 to 2008: Methodology and Surveillance Data
Laplante, Jennifer M, Marshall, Steven A, Shudt, Matthew, Van, Tam T, Reisdorf, Erik S, Mingle, Lisa A, Shult, Peter A, St. George, Kirsten
Published in Journal of Clinical Microbiology (01.05.2009)
Published in Journal of Clinical Microbiology (01.05.2009)
Get full text
Journal Article
Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State
Shea, Joseph, Halse, Tanya A, Lapierre, Pascal, Shudt, Matthew, Kohlerschmidt, Donna, Van Roey, Patrick, Limberger, Ronald, Taylor, Jill, Escuyer, Vincent, Musser, Kimberlee A
Published in Journal of clinical microbiology (01.06.2017)
Published in Journal of clinical microbiology (01.06.2017)
Get full text
Journal Article
Next Generation Sequencing for Whole Genome Analysis and Surveillance of Influenza A Viruses
McGinnis, Jana, Laplante, Jennifer, Shudt, Matthew, George, Kirsten St
Published in Journal of clinical virology (01.06.2016)
Published in Journal of clinical virology (01.06.2016)
Get full text
Journal Article
Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States
Alpert, Tara, Brito, Anderson F., Lasek-Nesselquist, Erica, Rothman, Jessica, Valesano, Andrew L., MacKay, Matthew J., Petrone, Mary E., Breban, Mallery I., Watkins, Anne E., Vogels, Chantal B.F., Kalinich, Chaney C., Dellicour, Simon, Russell, Alexis, Kelly, John P., Shudt, Matthew, Plitnick, Jonathan, Schneider, Erasmus, Fitzsimmons, William J., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., Nash, Megan, Beaubier, Nike, Wang, Jianhui, Liu, Chen, Hui, Pei, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, Bart, Stephen M., Grills, Ardath, Morrison, Stephanie M., Murphy, Steven, Neal, Caleb, Laszlo, Eva, Rennert, Hanna, Cushing, Melissa, Westblade, Lars, Velu, Priya, Craney, Arryn, Cong, Lin, Peaper, David R., Landry, Marie L., Cook, Peter W., Fauver, Joseph R., Mason, Christopher E., Lauring, Adam S., St. George, Kirsten, MacCannell, Duncan R., Grubaugh, Nathan D.
Published in Cell (13.05.2021)
Published in Cell (13.05.2021)
Get full text
Journal Article
Oseltamivir-zanamivir combination therapy suppresses drug-resistant H1N1 influenza A viruses in the hollow fiber infection model (HFIM) system
Pires de Mello, Camilly P., Drusano, George L., Adams, Jonathan R., Shudt, Matthew, Kulawy, Robert, Brown, Ashley N.
Published in European journal of pharmaceutical sciences (01.01.2018)
Published in European journal of pharmaceutical sciences (01.01.2018)
Get full text
Journal Article
Corrigendum to “Next generation sequencing for whole genome analysis and surveillance of influenza A viruses” [J. Clin. Virol. 79 (2016) 44–50]
McGinnis, Jana, Laplante, Jennifer, Shudt, Matthew, St. George, Kirsten
Published in Journal of clinical virology (01.08.2017)
Published in Journal of clinical virology (01.08.2017)
Get full text
Journal Article
Public health response to a case of paralytic poliomyelitis in an unvaccinated person and detection of poliovirus in wastewater—New York, June–August 2022
Link‐Gelles, Ruth, Lutterloh, Emily, Ruppert, Patricia Schnabel, Backenson, P. Bryon, St. George, Kirsten, Rosenberg, Eli S., Anderson, Bridget J., Fuschino, Meghan, Popowich, Michael, Punjabi, Chitra, Souto, Maria, McKay, Kevin, Rulli, Samuel, Insaf, Tabassum, Hill, Dustin, Kumar, Jessica, Gelman, Irina, Jorba, Jaume, Ng, Terry Fei Fan, Gerloff, Nancy, Masters, Nina B., Lopez, Adriana, Dooling, Kathleen, Stokley, Shannon, Kidd, Sarah, Oberste, M. Steven, Routh, Janell, Belgasmi, Hanen, Brister, Barrett, Bullows, James E., Burns, Cara C., Castro, Christina J., Cory, Janine, Dybdahl‐Sissoko, Naomi, Emery, Brian D., English, Randall, Frolov, Ann D., Getachew, Halle, Henderson, Elizabeth, Hess, Alexandra, Mason, Karen, Mercante, Jeffrey W., Miles, Stacey Jeffries, Liu, Hongmei, Marine, Rachel L., Momin, Nehalraza, Pang, Hong, Perry, Daniel, Rogers, Shannon L., Short, Brandon, Sun, Hong, Tobolowsky, Farrell, Yee, Eileen, Hughes, Scott, Hygiene, Mental, Omoregie, Enoma, Hygiene, Mental, Rosen, Jennifer B., Hygiene, Mental, Zucker, Jane R., Hygiene, Mental, Alazawi, Mohammed, Bauer, Ursula, Godinez, Alex, Hanson, Brianna, Heslin, Eugene, McDonald, James, Mita‐Mendoza, Neida K., Meldrum, Megan, Neigel, Dana, Suitor, Robin, Larsen, David A., Egan, Christina, Faraci, Nicola, Feumba, G. Stephanie, Gray, Todd, Lamson, Daryl, Laplante, Jennifer, McDonough, Kathleen, Migliore, Natalie, Moghe, Amruta, Ogbamikael, Simon, Plitnick, Jonathan, Ramani, Rama, Rickerman, Lindsey, Rist, Erik, Schoultz, Lynsey, Shudt, Matthew, Krauchuk, Julie, Medina, Eric, Lawler, Jacqueline, Boss, Heather, Barca, Emanuele, Ghazali, Dabish B., Goyal, Tarini, Marinelli, Sean J.P., Roberts, Jackson A., Russo, Grace B., Thakur, Kiran T., Yang, Vivian Q.
Published in American journal of transplantation (01.10.2022)
Published in American journal of transplantation (01.10.2022)
Get full text
Journal Article
Public Health Response to a Case of Paralytic Poliomyelitis in an Unvaccinated Person and Detection of Poliovirus in Wastewater — New York, June–August 2022
Link-Gelles, Ruth, Lutterloh, Emily, Ruppert, Patricia Schnabel, Backenson, P. Bryon, George, Kirsten St, Rosenberg, Eli S, Anderson, Bridget J, Fuschino, Meghan, Popowich, Michael, Punjabi, Chitra, Souto, Maria, McKay, Kevin, Rulli, Samuel, Insaf, Tabassum, Hill, Dustin, Kumar, Jessica, Gelman, Irina, Jorba, Jaume, Ng, Terry Fei Fan, Gerloff, Nancy, Masters, Nina B, Lopez, Adriana, Dooling, Kathleen, Stokley, Shannon, Kidd, Sarah, Oberste, M. Steven, Routh, Janell
Published in MMWR. Morbidity and mortality weekly report (19.08.2022)
Published in MMWR. Morbidity and mortality weekly report (19.08.2022)
Get full text
Journal Article
Newsletter
Molecular typing and whole genome next generation sequencing of human adenovirus 8 strains recovered from four 2012 outbreaks of keratoconjunctivitis in New York State
Lamson BS, Daryl M., Kajon, Adriana E., Shudt, Matthew, Quinn, Monica, Newman, Alexandra, Whitehouse, Joan, Greenko, Jane, Adams, Eleanor, George, Kirsten
Published in Journal of medical virology (01.09.2018)
Published in Journal of medical virology (01.09.2018)
Get full text
Journal Article
Identification of a novel intertypic recombinant species D human adenovirus in a pediatric stem cell transplant recipient
Kajon, Adriana E, Lamson, Daryl, Shudt, Matthew, Oikonomopoulou, Zacharoula, Fisher, Brian, Klieger, Sarah, St. George, Kirsten, Hodinka, Richard L
Published in Journal of clinical virology (01.12.2014)
Published in Journal of clinical virology (01.12.2014)
Get full text
Journal Article