Computational Redesign of PD-1 Interface for PD-L1 Ligand Selectivity
Shrestha, Rojan, Garrett, Sarah C., Almo, Steven C., Fiser, Andras
Published in Structure (London) (07.05.2019)
Published in Structure (London) (07.05.2019)
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Journal Article
A machine learning strategy for the identification of key in silico descriptors and prediction models for IgG monoclonal antibody developability properties
Waight, Andrew B., Prihoda, David, Shrestha, Rojan, Metcalf, Kevin, Bailly, Marc, Ancona, Marco, Widatalla, Talal, Rollins, Zachary, Cheng, Alan C, Bitton, Danny A., Fayadat-Dilman, Laurence
Published in mAbs (31.12.2023)
Published in mAbs (31.12.2023)
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Journal Article
Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13
Fajardo, J. Eduardo, Shrestha, Rojan, Gil, Nelson, Belsom, Adam, Crivelli, Silvia N., Czaplewski, Cezary, Fidelis, Krzysztof, Grudinin, Sergei, Karasikov, Mikhail, Karczyńska, Agnieszka S., Kryshtafovych, Andriy, Leitner, Alexander, Liwo, Adam, Lubecka, Emilia A., Monastyrskyy, Bohdan, Pagès, Guillaume, Rappsilber, Juri, Sieradzan, Adam K., Sikorska, Celina, Trabjerg, Esben, Fiser, Andras
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
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Journal Article
A probabilistic fragment-based protein structure prediction algorithm
Simoncini, David, Berenger, Francois, Shrestha, Rojan, Zhang, Kam Y J
Published in PloS one (19.07.2012)
Published in PloS one (19.07.2012)
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Journal Article
Durandal: Fast exact clustering of protein decoys
Berenger, Francois, Shrestha, Rojan, Zhou, Yong, Simoncini, David, Zhang, Kam Y. J.
Published in Journal of computational chemistry (05.02.2012)
Published in Journal of computational chemistry (05.02.2012)
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Journal Article
Entropy-accelerated exact clustering of protein decoys
BERENGER, Francois, YONG ZHOU, SHRESTHA, Rojan, ZHANG, Kam Y. J
Published in Bioinformatics (01.04.2011)
Published in Bioinformatics (01.04.2011)
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Journal Article
Fragger: a protein fragment picker for structural queries [version 2; peer review: 2 approved]
Berenger, Francois, Simoncini, David, Voet, Arnout, Shrestha, Rojan, Zhang, Kam Y.J
Published in F1000 research (10.04.2018)
Published in F1000 research (10.04.2018)
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Journal Article
Residue-based pharmacophore approaches to study protein–protein interactions
Shrestha, Rojan, Fajardo, Jorge Eduardo, Fiser, Andras
Published in Current opinion in structural biology (01.04.2021)
Published in Current opinion in structural biology (01.04.2021)
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Journal Article
Redesigning HVEM Interface for Selective Binding to LIGHT, BTLA, and CD160
Shrestha, Rojan, Garrett-Thomson, Sarah C., Liu, Weifeng, Almo, Steven C., Fiser, Andras
Published in Structure (London) (03.11.2020)
Published in Structure (London) (03.11.2020)
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Journal Article
A fragmentation and reassembly method for ab initio phasing
Shrestha, Rojan, Zhang, Kam Y. J.
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2015)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2015)
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Journal Article
Error estimation guided rebuilding of de novo models for ab initio phasing
Shrestha, Rojan, Simoncini, David, Zhang, Kam
Published in Acta crystallographica. Section A, Foundations and advances (05.08.2014)
Published in Acta crystallographica. Section A, Foundations and advances (05.08.2014)
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Journal Article
Improving fragment quality for de novo structure prediction
Shrestha, Rojan, Zhang, Kam Y. J.
Published in Proteins, structure, function, and bioinformatics (01.09.2014)
Published in Proteins, structure, function, and bioinformatics (01.09.2014)
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Journal Article
Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13
Fajardo, J. Eduardo, Shrestha, Rojan, Gil, Nelson, Belsom, Adam, Crivelli, Silvia N., Czaplewski, Cezary, Fidelis, Krzysztof, Grudinin, Sergei, Karasikov, Mikhail, Karczyńska, Agnieszka S., Kryshtafovych, Andriy, Leitner, Alexander, Liwo, Adam, Lubecka, Emilia A., Monastyrskyy, Bohdan, Pagès, Guillaume, Rappsilber, Juri, Sieradzan, Adam K., Sikorska, Celina, Trabjerg, Esben, Fiser, Andras
Published in Proteins, structure, function, and bioinformatics (01.03.2020)
Published in Proteins, structure, function, and bioinformatics (01.03.2020)
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Journal Article
Correction: A Probabilistic Fragment-Based Protein Structure Prediction Algorithm
Simoncini, David, Berenger, Francois, Shrestha, Rojan, Zhang, Kam Y. J.
Published in PloS one (05.10.2012)
Published in PloS one (05.10.2012)
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Journal Article