American Gut: an Open Platform for Citizen Science Microbiome Research
McDonald, Daniel, Hyde, Embriette, Debelius, Justine W, Morton, James T, Gonzalez, Antonio, Ackermann, Gail, Aksenov, Alexander A, Behsaz, Bahar, Brennan, Caitriona, Chen, Yingfeng, DeRight Goldasich, Lindsay, Dorrestein, Pieter C, Dunn, Robert R, Fahimipour, Ashkaan K, Gaffney, James, Gilbert, Jack A, Gogul, Grant, Green, Jessica L, Hugenholtz, Philip, Humphrey, Greg, Huttenhower, Curtis, Jackson, Matthew A, Janssen, Stefan, Jeste, Dilip V, Jiang, Lingjing, Kelley, Scott T, Knights, Dan, Kosciolek, Tomasz, Ladau, Joshua, Leach, Jeff, Marotz, Clarisse, Meleshko, Dmitry, Melnik, Alexey V, Metcalf, Jessica L, Mohimani, Hosein, Montassier, Emmanuel, Navas-Molina, Jose, Nguyen, Tanya T, Peddada, Shyamal, Pevzner, Pavel, Pollard, Katherine S, Rahnavard, Gholamali, Robbins-Pianka, Adam, Sangwan, Naseer, Shorenstein, Joshua, Smarr, Larry, Song, Se Jin, Spector, Timothy, Swafford, Austin D, Thackray, Varykina G, Thompson, Luke R, Tripathi, Anupriya, Vázquez-Baeza, Yoshiki, Vrbanac, Alison, Wischmeyer, Paul, Wolfe, Elaine, Zhu, Qiyun, Knight, Rob
Published in mSystems (01.05.2018)
Published in mSystems (01.05.2018)
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Metagenomic covariation along densely sampled environmental gradients in the Red Sea
Thompson, Luke R, Williams, Gareth J, Haroon, Mohamed F, Shibl, Ahmed, Larsen, Peter, Shorenstein, Joshua, Knight, Rob, Stingl, Ulrich
Published in The ISME Journal (01.01.2017)
Published in The ISME Journal (01.01.2017)
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Minimal-length short hairpin RNAs: the relationship of structure and RNAi activity
Ge, Qing, Ilves, Heini, Dallas, Anne, Kumar, Pavan, Shorenstein, Joshua, Kazakov, Sergei A, Johnston, Brian H
Published in RNA (Cambridge) (01.01.2010)
Published in RNA (Cambridge) (01.01.2010)
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Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing
Dallas, Anne, Ilves, Heini, Ge, Qing, Kumar, Pavan, Shorenstein, Joshua, Kazakov, Sergei A, Cuellar, Trinna L, McManus, Michael T, Behlke, Mark A, Johnston, Brian H
Published in Nucleic acids research (01.10.2012)
Published in Nucleic acids research (01.10.2012)
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Minimal-length Synthetic shRNAs Formulated with Lipid Nanoparticles are Potent Inhibitors of Hepatitis C Virus IRES-linked Gene Expression in Mice
Dallas, Anne, Ilves, Heini, Shorenstein, Joshua, Judge, Adam, Spitler, Ryan, Contag, Christopher, Wong, Suet Ping, Harbottle, Richard P, MacLachlan, Ian, Johnston, Brian H
Published in Molecular therapy. Nucleic acids (2013)
Published in Molecular therapy. Nucleic acids (2013)
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Qiita: rapid, web-enabled microbiome meta-analysis
Gonzalez, Antonio, Navas-Molina, Jose A, Kosciolek, Tomasz, McDonald, Daniel, Vázquez-Baeza, Yoshiki, Ackermann, Gail, DeReus, Jeff, Janssen, Stefan, Swafford, Austin D, Orchanian, Stephanie B, Sanders, Jon G, Shorenstein, Joshua, Holste, Hannes, Petrus, Semar, Robbins-Pianka, Adam, Brislawn, Colin J, Wang, Mingxun, Rideout, Jai Ram, Bolyen, Evan, Dillon, Matthew, Caporaso, J Gregory, Dorrestein, Pieter C, Knight, Rob
Published in Nature methods (01.10.2018)
Published in Nature methods (01.10.2018)
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Formulated Minimal-Length Synthetic Small Hairpin RNAs Are Potent Inhibitors of Hepatitis C Virus in Mice With Humanized Livers
Ma, Han, Dallas, Anne, Ilves, Heini, Shorenstein, Joshua, MacLachlan, Ian, Klumpp, Klaus, Johnston, Brian H
Published in Gastroenterology (New York, N.Y. 1943) (01.01.2014)
Published in Gastroenterology (New York, N.Y. 1943) (01.01.2014)
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NUCLEIC ACID WATERMARKS TO ASSESS AND IMPROVE NUCLEIC ACID-GUIDED NUCLEASE OR NICKASE FUSION EDITING
Tanner, Stephen, Graige, Michael, Krishnamurthy, Nandini, Halweg-Edwards, Andrea, Struble, Craig, Shorenstein, Joshua, Cawley, Simon, Leland, Bryan, Shaver, Timothy
Year of Publication 06.01.2022
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Year of Publication 06.01.2022
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SYSTEM AND METHOD FOR GENE EDITING CASSETTE DESIGN
KIM, Juhan, BROOKS, Aaron, ABBATE, Eric, LELAND, Bryan, HALWEG-EDWARDS, Andrea, SHORENSTEIN, Joshua, GARST, Andrew, STRUBLE, Craig, GANDER, Miles, SPINDLER, Eileen, HARDENBOL, Paul
Year of Publication 04.08.2022
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Year of Publication 04.08.2022
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A framework for evaluating edited cell libraries created by massively parallel genome engineering
Cawley, Simon, Abbate, Eric, Abraham, Christopher G, Alvarez, Steven, Barber, Mathew, Bolte, Scott, Bruand, Jocelyne, Church, Deanna M, Davis, Clint, Estes, Matthew, Federowicz, Stephen, Fox, Richard, Gander, Miles W, Garst, Andrew D, Gencer, Gozde, Halweg-Edwards, Andrea L, Hardenbol, Paul, Hraha, Thomas, Jain, Surbhi, Johnson, Charlie, Juneau, Kara, Krishnamurthy, Nandini, Lambert, Shea, Bryan, Leland, Pearson, Francesca, Ray, J Christian J, Sanada, Chad D, Shaver, Timothy M, Shepherd, Tyson R, Shorenstein, Joshua, Spindler, Eileen C, Struble, Craig A, Swat, Maciej H, Tanner, Stephen, Tian, Tian, Wishart, Ken, Graige, Michael S
Published in bioRxiv (05.04.2022)
Published in bioRxiv (05.04.2022)
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Paper
American Gut: an Open Platform for Citizen-Science Microbiome Research
Mcdonald, Daniel, Hyde, Embriette R, Debelius, Justine W, Morton, James T, Gonzalez, Antonio, Ackermann, Gail, Aksenov, Alexander A, Behsaz, Bahar, Brennan, Caitriona, Chen, Yingfeng, Goldasicha, Lindsay Deright, Dorrestein, Pieter C, Dunn, Robert R, Fahimipourg, Ashkaan K, Gaffney, James, Gilbert, Jack A, Grant Gogul, Green, Jessica L, Hugenholtz, Philip, Humphrey, Greg, Huttenhower, Curtis, Jackson, Matthew A, Janssen, Stefan, Jeste, Dilip V, Jiang, Lingjing, Kelley, Scott T, Knights, Dan, Kosciolek, Tomasz, Ladau, Joshua, Leach, Jeff, Marotz, Clarisse, Meleshko, Dmitry, Melnik, Alexey V, Metcalf, Jessica L, Mohimani, Hosein, Montassier, Emmanual, Navas-Molina, Jose, Nguyen, Tanya T, Peddada, Shyamal, Pevzner, Pavel, Pollard, Katherine S, Rahnavard, Gholamali, Robbins-Pianka, Adam, Sangwan, Naseer, Shorenstein, Joshua, Smarr, Larry, Se Jin Song, Spector, Timothy, Swafford, Austin D, Thackray, Varykina G, Thompson, Luke R, Tripathi, Anupriya, Vazquez-Baeza, Yoshiki, Vrbanac, Alison, Wischmeyer, Paul, Wolfe, Elaine, Zhu, Qiyun, American Gut Consortium, Knight, Rob
Published in bioRxiv (07.03.2018)
Published in bioRxiv (07.03.2018)
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