Mutualistic interplay between bacteriophages and bacteria in the human gut
Shkoporov, Andrey N., Turkington, Christopher J., Hill, Colin
Published in Nature reviews. Microbiology (01.12.2022)
Published in Nature reviews. Microbiology (01.12.2022)
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Journal Article
ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis
Shkoporov, Andrey N., Khokhlova, Ekaterina V., Fitzgerald, C. Brian, Stockdale, Stephen R., Draper, Lorraine A., Ross, R. Paul, Hill, Colin
Published in Nature communications (14.11.2018)
Published in Nature communications (14.11.2018)
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Journal Article
The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific
Shkoporov, Andrey N., Clooney, Adam G., Sutton, Thomas D.S., Ryan, Feargal J., Daly, Karen M., Nolan, James A., McDonnell, Siobhan A., Khokhlova, Ekaterina V., Draper, Lorraine A., Forde, Amanda, Guerin, Emma, Velayudhan, Vimalkumar, Ross, R. Paul, Hill, Colin
Published in Cell host & microbe (09.10.2019)
Published in Cell host & microbe (09.10.2019)
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Journal Article
Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
Clooney, Adam G., Sutton, Thomas D.S., Shkoporov, Andrey N., Holohan, Ross K., Daly, Karen M., O’Regan, Orla, Ryan, Feargal J., Draper, Lorraine A., Plevy, Scott E., Ross, R. Paul, Hill, Colin
Published in Cell host & microbe (11.12.2019)
Published in Cell host & microbe (11.12.2019)
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Journal Article
Factors Affecting Variation of the Human Gut Phageome
Tobin, Ciara A, Hill, Colin, Shkoporov, Andrey N
Published in Annual review of microbiology (15.09.2023)
Published in Annual review of microbiology (15.09.2023)
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Journal Article
Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut
Guerin, Emma, Shkoporov, Andrey, Stockdale, Stephen R., Clooney, Adam G., Ryan, Feargal J., Sutton, Thomas D.S., Draper, Lorraine A., Gonzalez-Tortuero, Enrique, Ross, R. Paul, Hill, Colin
Published in Cell host & microbe (14.11.2018)
Published in Cell host & microbe (14.11.2018)
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Journal Article
Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa
Fitzgerald, Cormac Brian, Shkoporov, Andrey N, Sutton, Thomas D S, Chaplin, Andrei V, Velayudhan, Vimalkumar, Ross, R Paul, Hill, Colin
Published in BMC genomics (14.12.2018)
Published in BMC genomics (14.12.2018)
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Journal Article
Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis
Shkoporov, Andrey N, Khokhlova, Ekaterina V, Stephens, Niamh, Hueston, Cara, Seymour, Samuel, Hryckowian, Andrew J, Scholz, Dimitri, Ross, R Paul, Hill, Colin
Published in BMC biology (18.08.2021)
Published in BMC biology (18.08.2021)
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Journal Article
Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee
Turner, Dann, Shkoporov, Andrey N., Lood, Cédric, Millard, Andrew D., Dutilh, Bas E., Alfenas-Zerbini, Poliane, van Zyl, Leonardo J., Aziz, Ramy K., Oksanen, Hanna M., Poranen, Minna M., Kropinski, Andrew M., Barylski, Jakub, Brister, J Rodney, Chanisvili, Nina, Edwards, Rob A., Enault, François, Gillis, Annika, Knezevic, Petar, Krupovic, Mart, Kurtböke, Ipek, Kushkina, Alla, Lavigne, Rob, Lehman, Susan, Lobocka, Malgorzata, Moraru, Cristina, Moreno Switt, Andrea, Morozova, Vera, Nakavuma, Jesca, Reyes Muñoz, Alejandro, Rūmnieks, Jānis, Sarkar, BL, Sullivan, Matthew B., Uchiyama, Jumpei, Wittmann, Johannes, Yigang, Tong, Adriaenssens, Evelien M.
Published in Archives of virology (01.02.2023)
Published in Archives of virology (01.02.2023)
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Journal Article
Roles of the gut virome and mycobiome in faecal microbiota transplantation
Lam, Siu, Bai, Xiaowu, Shkoporov, Andrey N, Park, Heekuk, Wu, Xiaojian, Lan, Ping, Zuo, Tao
Published in The lancet. Gastroenterology & hepatology (01.05.2022)
Published in The lancet. Gastroenterology & hepatology (01.05.2022)
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Journal Article
Reproducible protocols for metagenomic analysis of human faecal phageomes
Shkoporov, Andrey N, Ryan, Feargal J, Draper, Lorraine A, Forde, Amanda, Stockdale, Stephen R, Daly, Karen M, McDonnell, Siobhan A, Nolan, James A, Sutton, Thomas D S, Dalmasso, Marion, McCann, Angela, Ross, R Paul, Hill, Colin
Published in Microbiome (10.04.2018)
Published in Microbiome (10.04.2018)
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Journal Article
Structural atlas of a human gut crassvirus
Bayfield, Oliver W., Shkoporov, Andrey N., Yutin, Natalya, Khokhlova, Ekaterina V., Smith, Jake L. R., Hawkins, Dorothy E. D. P., Koonin, Eugene V., Hill, Colin, Antson, Alfred A.
Published in Nature (London) (11.05.2023)
Published in Nature (London) (11.05.2023)
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Journal Article
Stability of the human gut virome and effect of gluten-free diet
Garmaeva, Sanzhima, Gulyaeva, Anastasia, Sinha, Trishla, Shkoporov, Andrey N., Clooney, Adam G., Stockdale, Stephen R., Spreckels, Johanne E., Sutton, Thomas D.S., Draper, Lorraine A., Dutilh, Bas E., Wijmenga, Cisca, Kurilshikov, Alexander, Fu, Jingyuan, Hill, Colin, Zhernakova, Alexandra
Published in Cell reports (Cambridge) (18.05.2021)
Published in Cell reports (Cambridge) (18.05.2021)
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Journal Article
Transmission and dynamics of mother-infant gut viruses during pregnancy and early life
Garmaeva, Sanzhima, Sinha, Trishla, Gulyaeva, Anastasia, Kuzub, Nataliia, Spreckels, Johanne E., Andreu-Sánchez, Sergio, Gacesa, Ranko, Vich Vila, Arnau, Brushett, Siobhan, Kruk, Marloes, Dekens, Jackie, Sikkema, Jan, Kuipers, Folkert, Shkoporov, Andrey N., Hill, Colin, Scherjon, Sicco, Wijmenga, Cisca, Fu, Jingyuan, Kurilshikov, Alexander, Zhernakova, Alexandra
Published in Nature communications (02.03.2024)
Published in Nature communications (02.03.2024)
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Journal Article
Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens
Guerin, Emma, Shkoporov, Andrey N, Stockdale, Stephen R, Comas, Joan Colom, Khokhlova, Ekaterina V, Clooney, Adam G, Daly, Karen M, Draper, Lorraine A, Stephens, Niamh, Scholz, Dimitri, Ross, R Paul, Hill, Colin
Published in Microbiome (12.04.2021)
Published in Microbiome (12.04.2021)
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Journal Article
Probing the "Dark Matter" of the Human Gut Phageome: Culture Assisted Metagenomics Enables Rapid Discovery and Host-Linking for Novel Bacteriophages
Fitzgerald, C Brian, Shkoporov, Andrey N, Upadrasta, Aditya, Khokhlova, Ekaterina V, Ross, R Paul, Hill, Colin
Published in Frontiers in cellular and infection microbiology (15.03.2021)
Published in Frontiers in cellular and infection microbiology (15.03.2021)
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Journal Article
Social anxiety disorder-associated gut microbiota increases social fear
Ritz, Nathaniel L, Brocka, Marta, Butler, Mary I, Cowan, Caitlin S M, Barrera-Bugueño, Camila, Turkington, Christopher J R, Draper, Lorraine A, Bastiaanssen, Thomaz F S, Turpin, Valentine, Morales, Lorena, Campos, David, Gheorghe, Cassandra E, Ratsika, Anna, Sharma, Virat, Golubeva, Anna V, Aburto, Maria R, Shkoporov, Andrey N, Moloney, Gerard M, Hill, Colin, Clarke, Gerard, Slattery, David A, Dinan, Timothy G, Cryan, John F
Published in Proceedings of the National Academy of Sciences - PNAS (02.01.2024)
Published in Proceedings of the National Academy of Sciences - PNAS (02.01.2024)
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