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Validation of OncoPanel: A Targeted Next-Generation Sequencing Assay for the Detection of Somatic Variants in Cancer
Garcia, Elizabeth P., Minkovsky, Alissa, Jia, Yonghui, Ducar, Matthew D., Shivdasani, Priyanka, Gong, Xin, Ligon, Azra H., Sholl, Lynette M., Kuo, Frank C., MacConaill, Laura E., Lindeman, Neal I, Dong, Fei
Published in Archives of pathology & laboratory medicine (1976) (01.06.2017)
Published in Archives of pathology & laboratory medicine (1976) (01.06.2017)
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Detection of Mismatch Repair Deficiency and Microsatellite Instability in Colorectal Adenocarcinoma by Targeted Next-Generation Sequencing
Nowak, Jonathan A., Yurgelun, Matthew B., Bruce, Jacqueline L., Rojas-Rudilla, Vanesa, Hall, Dimity L., Shivdasani, Priyanka, Garcia, Elizabeth P., Agoston, Agoston T., Srivastava, Amitabh, Ogino, Shuji, Kuo, Frank C., Lindeman, Neal I., Dong, Fei
Published in The Journal of molecular diagnostics : JMD (01.01.2017)
Published in The Journal of molecular diagnostics : JMD (01.01.2017)
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Next-generation sequencing informs diagnosis and identifies unexpected therapeutic targets in lung squamous cell carcinomas
Sands, Jacob M., Nguyen, Tom, Shivdasani, Priyanka, Sacher, Adrian G., Cheng, Michael L., Alden, Ryan S., Jänne, Pasi A., Kuo, Frank C., Oxnard, Geoffrey R., Sholl, Lynette M.
Published in Lung cancer (Amsterdam, Netherlands) (01.02.2020)
Published in Lung cancer (Amsterdam, Netherlands) (01.02.2020)
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KRAS and NKX2-1 Mutations in Invasive Mucinous Adenocarcinoma of the Lung
Hwang, David H., Sholl, Lynette M., Rojas-Rudilla, Vanesa, Hall, Dimity L., Shivdasani, Priyanka, Garcia, Elizabeth P., MacConaill, Laura E., Vivero, Marina, Hornick, Jason L., Kuo, Frank C., Lindeman, Neal I., Dong, Fei
Published in Journal of thoracic oncology (01.04.2016)
Published in Journal of thoracic oncology (01.04.2016)
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Frameshift events predict anti–PD-1/L1 response in head and neck cancer
Hanna, Glenn J., Lizotte, Patrick, Cavanaugh, Megan, Kuo, Frank C., Shivdasani, Priyanka, Frieden, Alexander, Chau, Nicole G., Schoenfeld, Jonathan D., Lorch, Jochen H., Uppaluri, Ravindra, MacConaill, Laura E., Haddad, Robert I.
Published in JCI insight (22.02.2018)
Published in JCI insight (22.02.2018)
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Assessment of genomic alterations in non-syndromic von Hippel-Lindau: Insight from integrating somatic and germline next generation sequencing genomic data
Manning, Danielle K., Shivdasani, Priyanka, Koeller, Diane R., Schwartz, Alison, Rana, Huma Q., Garber, Judy E., Lindeman, Neal I., Ghazani, Arezou A.
Published in Data in brief (01.12.2021)
Published in Data in brief (01.12.2021)
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Targeted next-generation sequencing reveals high frequency of mutations in epigenetic regulators across treatment-naïve patient melanomas
Lee, Jonathan J., Sholl, Lynette M., Lindeman, Neal I., Granter, Scott R., Laga, Alvaro C., Shivdasani, Priyanka, Chin, Gary, Luke, Jason J., Ott, Patrick A., Hodi, F. Stephen, Mihm, Martin C., Lin, Jennifer Y., Werchniak, Andrew E., Haynes, Harley A., Bailey, Nancy, Liu, Robert, Murphy, George F., Lian, Christine G.
Published in Clinical epigenetics (09.06.2015)
Published in Clinical epigenetics (09.06.2015)
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MET Exon 14 Mutations in Non–Small-Cell Lung Cancer Are Associated With Advanced Age and Stage-Dependent MET Genomic Amplification and c-Met Overexpression
Awad, Mark M., Oxnard, Geoffrey R., Jackman, David M., Savukoski, Daniel O., Hall, Dimity, Shivdasani, Priyanka, Heng, Jennifer C., Dahlberg, Suzanne E., Jänne, Pasi A., Verma, Suman, Christensen, James, Hammerman, Peter S., Sholl, Lynette M.
Published in Journal of clinical oncology (01.03.2016)
Published in Journal of clinical oncology (01.03.2016)
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AACR Project GENIE: Powering Precision Medicine through an International Consortium
André, Fabrice, Arnedos, Monica, Baras, Alexander S., Baselga, José, Bedard, Philippe L., Berger, Michael F., Bierkens, Mariska, Calvo, Fabien, Cerami, Ethan, Chakravarty, Debyani, Dang, Kristen K., Davidson, Nancy E., Del Vecchio Fitz, Catherine, Dogan, Semih, DuBois, Raymond N., Ducar, Matthew D., Futreal, P. Andrew, Gao, Jianjiong, Garcia, Francisco, Gardos, Stu, Gocke, Christopher D., Gross, Benjamin E., Guinney, Justin, Heins, Zachary J., Hintzen, Stephanie, Horlings, Hugo, Hudeček, Jan, Hyman, David M., Kamel-Reid, Suzanne, Kandoth, Cyriac, Kinyua, Walter, Kumari, Priti, Kundra, Ritika, Ladanyi, Marc, Lefebvre, Céline, LeNoue-Newton, Michele L., Lepisto, Eva M., Levy, Mia A., Lindeman, Neal I., Lindsay, James, Liu, David, Lu, Zhibin, MacConaill, Laura E., Maurer, Ian, Maxwell, David S., Meijer, Gerrit A., Meric-Bernstam, Funda, Micheel, Christine M., Miller, Clinton, Mills, Gordon, Moore, Nathanael D., Nederlof, Petra M., Omberg, Larsson, Orechia, John A., Park, Ben Ho, Pugh, Trevor J., Reardon, Brendan, Rollins, Barrett J., Routbort, Mark J., Sawyers, Charles L., Schrag, Deborah, Schultz, Nikolaus, Shaw, Kenna R Mills, Shivdasani, Priyanka, Siu, Lillian L., Solit, David B., Sonke, Gabe S., Soria, Jean Charles, Sripakdeevong, Parin, Stickle, Natalie H., Stricker, Thomas P., Sweeney, Shawn M., Taylor, Barry S., ten Hoeve, Jelle J., Thomas, Stacy B., Van Allen, Eliezer M., Van 'T Veer, Laura J., van de Velde, Tony, van Tinteren, Harm, Velculescu, Victor E., Virtanen, Carl, Voest, Emile E., Wang, Lucy L., Wathoo, Chetna, Watt, Stuart, Yu, Celeste, Yu, Thomas V., Yu, Emily, Zehir, Ahmet, Zhang, Hongxin
Published in Cancer discovery (01.08.2017)
Published in Cancer discovery (01.08.2017)
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Frameshift events predict anti-PD-1/L1 response in head and neck cancer
Hanna, Glenn J, Lizotte, Patrick, Cavanaugh, Megan, Kuo, Frank C, Shivdasani, Priyanka, Frieden, Alexander, Chau, Nicole G, Schoenfeld, Jonathan D, Lorch, Jochen H, Uppaluri, Ravindra, MacConaill, Laura E, Haddad, Robert I
Published in JCI insight (22.02.2018)
Published in JCI insight (22.02.2018)
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Noninvasive Follicular Thyroid Neoplasm with Papillary-Like Nuclear Features Accounts for More Than Half of "Carcinomas" Harboring RAS Mutations
Paulson, Vera A, Shivdasani, Priyanka, Angell, Trevor E, Cibas, Edmund S, Krane, Jeffrey F, Lindeman, Neal I, Alexander, Erik K, Barletta, Justine A
Published in Thyroid (New York, N.Y.) (01.04.2017)
Published in Thyroid (New York, N.Y.) (01.04.2017)
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Institutional implementation of clinical tumor profiling on an unselected cancer population
Sholl, Lynette M., Do, Khanh, Shivdasani, Priyanka, Cerami, Ethan, Dubuc, Adrian M., Kuo, Frank C., Garcia, Elizabeth P., Jia, Yonghui, Davineni, Phani, Abo, Ryan P., Pugh, Trevor J., van Hummelen, Paul, Thorner, Aaron R., Ducar, Matthew, Berger, Alice H., Nishino, Mizuki, Janeway, Katherine A., Church, Alanna, Harris, Marian, Ritterhouse, Lauren L., Campbell, Joshua D., Rojas-Rudilla, Vanesa, Ligon, Azra H., Ramkissoon, Shakti, Cleary, James M., Matulonis, Ursula, Oxnard, Geoffrey R., Chao, Richard, Tassell, Vanessa, Christensen, James, Hahn, William C., Kantoff, Philip W., Kwiatkowski, David J., Johnson, Bruce E., Meyerson, Matthew, Garraway, Levi A., Shapiro, Geoffrey I., Rollins, Barrett J., Lindeman, Neal I., MacConaill, Laura E.
Published in JCI insight (17.11.2016)
Published in JCI insight (17.11.2016)
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Author Correction: Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer
Forrest, Suzanne J., Gupta, Hersh, Ward, Abigail, Li, Yvonne Y., Doan, Duong, Al-Ibraheemi, Alyaa, Alexandrescu, Sanda, Bandopadhayay, Pratiti, Shusterman, Suzanne, Mullen, Elizabeth A., Collins, Natalie B., Chi, Susan N., Wright, Karen D., Kumari, Priti, Mazor, Tali, Ligon, Keith L., Shivdasani, Priyanka, Manam, Monica, MacConaill, Laura E., Ceca, Evelina, Benich, Sidney N., London, Wendy B., Schilsky, Richard L., Bruinooge, Suanna S., Guidry Auvil, Jaime M., Cerami, Ethan, Rollins, Barrett J., Meyerson, Matthew L., Lindeman, Neal I., Johnson, Bruce E., Cherniack, Andrew D., Church, Alanna J., Janeway, Katherine A.
Published in Nature communications (22.08.2024)
Published in Nature communications (22.08.2024)
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Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer
Forrest, Suzanne J., Gupta, Hersh, Ward, Abigail, Li, Yvonne Y., Doan, Duong, Al-Ibraheemi, Alyaa, Alexandrescu, Sanda, Bandopadhayay, Pratiti, Shusterman, Suzanne, Mullen, Elizabeth A., Collins, Natalie B., Chi, Susan N., Wright, Karen D., Kumari, Priti, Mazor, Tali, Ligon, Keith L., Shivdasani, Priyanka, Manam, Monica, MacConaill, Laura E., Ceca, Evelina, Benich, Sidney N., London, Wendy B., Schilsky, Richard L., Bruinooge, Suanna S., Guidry Auvil, Jaime M., Cerami, Ethan, Rollins, Barrett J., Meyerson, Matthew L., Lindeman, Neal I., Johnson, Bruce E., Cherniack, Andrew D., Church, Alanna J., Janeway, Katherine A.
Published in Nature communications (11.07.2024)
Published in Nature communications (11.07.2024)
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Clinical Implementation of Matched Tumor/Germline Sequencing Improves Accuracy of Tumor Genomic Profiling and Therapeutic Recommendations
Manning, Danielle K., Ananda, Guruprasad, Eifert, Cheryl, Rojas-Rudilla, Vanesa, Swanton, William, Keefe, Shawn, Garcia, Elizabeth P., D'Eletto, Michael, Holdmore, Erica, Mishra, Satyakam, Borziak, Kirill, Lukasse, Pieter, Davineni, Phani, Manam, Monica D., Shivdasani, Priyanka, Ghazani, Arezou A., Wang, Ai Ling, Bastepe, Murat, Beltran, Himisha, Janeway, Katherine A., Church, Alanna, Pollaci, Alicia, Chittenden, Anuradha B., Koeller, Diane R., Schwartz Levine, Alison, Garber, Judy E., Johnson, Bruce E., Lindeman, Neal I., Nowak, Jonathan A., Sholl, Lynette M., MacConaill, Laura E.
Published in The Journal of molecular diagnostics : JMD (22.07.2025)
Published in The Journal of molecular diagnostics : JMD (22.07.2025)
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Implications of Selection Bias Due to Delayed Study Entry in Clinical Genomic Studies
Brown, Samantha, Lavery, Jessica A, Shen, Ronglai, Martin, Axel S, Kehl, Kenneth L, Sweeney, Shawn M, Lepisto, Eva M, Rizvi, Hira, McCarthy, Caroline G, Schultz, Nikolaus, Warner, Jeremy L, Park, Ben Ho, Bedard, Philippe L, Riely, Gregory J, Schrag, Deborah, Panageas, Katherine S
Published in JAMA oncology (01.02.2022)
Published in JAMA oncology (01.02.2022)
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Prospective Enterprise-Level Molecular Genotyping of a Cohort of Cancer Patients
MacConaill, Laura E., Garcia, Elizabeth, Shivdasani, Priyanka, Ducar, Matthew, Adusumilli, Ravali, Breneiser, Marc, Byrne, Mark, Chung, Lawrence, Conneely, Jodie, Crosby, Lauren, Garraway, Levi A., Gong, Xin, Hahn, William C., Hatton, Charlie, Kantoff, Philip W., Kluk, Michael, Kuo, Frank, Jia, Yonghui, Joshi, Ruchi, Longtine, Janina, Manning, Allison, Palescandolo, Emanuele, Sharaf, Nematullah, Sholl, Lynette, van Hummelen, Paul, Wade, Jacqueline, Wollinson, Bruce M., Zepf, Dimity, Rollins, Barrett J., Lindeman, Neal I.
Published in The Journal of molecular diagnostics : JMD (01.11.2014)
Published in The Journal of molecular diagnostics : JMD (01.11.2014)
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Abstract 4666: Revolutionizing clinical care using prospective, institution-wide tumor sequencing
Sholl, Lynette M., Garcia, Elizabeth, Jia, Yonghui, Ducar, Matthew, Fendler, Bernard, Shivdasani, Priyanka, Kuo, Frank C., Ligon, Azra H., Rollins, Barrett J., Lindeman, Neal I., MacConaill, Laura E.
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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Correlation Between Surrogate End Points and Overall Survival in a Multi-institutional Clinicogenomic Cohort of Patients With Non–Small Cell Lung or Colorectal Cancer
Kehl, Kenneth L., Riely, Gregory J., Lepisto, Eva M., Lavery, Jessica A., Warner, Jeremy L., LeNoue-Newton, Michele L., Sweeney, Shawn M., Rudolph, Julia E., Brown, Samantha, Yu, Celeste, Bedard, Philippe L., Schrag, Deborah, Panageas, Katherine S., Sweeney, Shawn, Foti, Margaret, Khotskaya, Yekaterina, Fiandalo, Michael, Gross, Benjamin, Schultz, Nikolaus, Mastrogiacomo, Brooke, Sarmardy, Mahdi, Li, Marilyn, Resnick, Adam, Waanders, Angela, Lilly, Jena, Carvajal, Richard, Rabadan, Raul, Ingham, Matthew, Hsaio, Susan, Abraham, Jean, Brenton, James, Rueda, Oscar, Caldas, Carlos, Valgañón, Mikel, Silva, Dilrini, Boursnell, Chris, Garcia, Raquel, Rodriguez, Ezequiel, Nimmervoll, Birgit, Cerami, Ethan, Ducar, Matthew, Kumari, Priti, Lindeman, Neal, MacConnaill, Laura, Orechia, John, Schrag, Deborah, Shivdasani, Priyanka, Van Allen, Eliezer, Johnson, Jason, Jänne, Pasi, Lepisto, Eva, Hassett, Michael, Pimentel, Sindy, Sripakdeevong, Parin, Janeway, Katherine, Johnson, Jason M., Meyerson, Matthew, Quinn, Daniel, Cushing, Oya, Haigis, Kevin, Miller, Diana, Kehl, Kenneth, Gustav, Alexander, Tramontano, Angela, Baquero, Simon Arango, Bell, Jonathan, Green, Michelle, McCall, Shannon, Datto, Michael, Calvo, Fabien, Andre, Fabrice, Guillaume, Meurice, Dogan, Semih, Ludovic, Lacroix, Scoazec, Jean, Ardenos, Monica, Vassal, Gilles, Michels, Stefan, Velculescu, Victor, Baras, Alexander, Gocke, Christopher, Brahmer, Julie, Sawyers, Charles, Solit, David, Gardos, Stu, Berger, Mike, Ladanyi, Marc, Riely, Gregory, Sirintrapun, Joseph, Caroline, Ari, Thomas, Stacy, Zarski, Andrew, Zehir, Ahmet, Iasonosa, Alexia, Philip, John, Brown, Samantha, Kung, Andrew, Kundra, Ritika, Rudolph, Julia, Lavery, Jessica
Published in JAMA network open (01.07.2021)
Published in JAMA network open (01.07.2021)
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Abstract 562: Oncovirus detection and integration analysis from human tumor samples using targeted massively parallel sequencing
Burns, Robert T., Hunter, Samuel S., Ducar, Matthew D., Thorner, Aaron R., Decaprio, James A., Hummelen, Paul Van, Frieden, Alexander, Nag, Anwesha, Coleman, Haley A., Slevin, Michael K., Clapp, Andrea, Drinan, Samantha D., McShane, Suzanne R., Thai, Edwin, Shivdasani, Priyanka, Bohannon, Joshua, Hoeftberger, Johann, Jacobs, Reuben, Wollison, Bruce M., Patel, Neil A., Manam, Monica D., Davineni, Phani, Meyerson, Matthew, MacConaill, Laura E.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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