SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
Hu, Jian, Li, Xiangjie, Coleman, Kyle, Schroeder, Amelia, Ma, Nan, Irwin, David J., Lee, Edward B., Shinohara, Russell T., Li, Mingyao
Published in Nature methods (01.11.2021)
Published in Nature methods (01.11.2021)
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Journal Article
Interpreting support vector machine models for multivariate group wise analysis in neuroimaging
Gaonkar, Bilwaj, T. Shinohara, Russell, Davatzikos, Christos
Published in Medical image analysis (01.08.2015)
Published in Medical image analysis (01.08.2015)
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Journal Article
Harmonization of cortical thickness measurements across scanners and sites
Fortin, Jean-Philippe, Cullen, Nicholas, Sheline, Yvette I., Taylor, Warren D., Aselcioglu, Irem, Cook, Philip A., Adams, Phil, Cooper, Crystal, Fava, Maurizio, McGrath, Patrick J., McInnis, Melvin, Phillips, Mary L., Trivedi, Madhukar H., Weissman, Myrna M., Shinohara, Russell T.
Published in NeuroImage (Orlando, Fla.) (15.02.2018)
Published in NeuroImage (Orlando, Fla.) (15.02.2018)
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Journal Article
Statistical harmonization corrects site effects in functional connectivity measurements from multi‐site fMRI data
Yu, Meichen, Linn, Kristin A., Cook, Philip A., Phillips, Mary L., McInnis, Melvin, Fava, Maurizio, Trivedi, Madhukar H., Weissman, Myrna M., Shinohara, Russell T., Sheline, Yvette I.
Published in Human brain mapping (01.11.2018)
Published in Human brain mapping (01.11.2018)
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Journal Article
Harmonization of multi-site diffusion tensor imaging data
Fortin, Jean-Philippe, Parker, Drew, Tunç, Birkan, Watanabe, Takanori, Elliott, Mark A., Ruparel, Kosha, Roalf, David R., Satterthwaite, Theodore D., Gur, Ruben C., Gur, Raquel E., Schultz, Robert T., Verma, Ragini, Shinohara, Russell T.
Published in NeuroImage (Orlando, Fla.) (01.11.2017)
Published in NeuroImage (Orlando, Fla.) (01.11.2017)
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Journal Article
Benchmarking of participant-level confound regression strategies for the control of motion artifact in studies of functional connectivity
Ciric, Rastko, Wolf, Daniel H., Power, Jonathan D., Roalf, David R., Baum, Graham L., Ruparel, Kosha, Shinohara, Russell T., Elliott, Mark A., Eickhoff, Simon B., Davatzikos, Christos, Gur, Ruben C., Gur, Raquel E., Bassett, Danielle S., Satterthwaite, Theodore D.
Published in NeuroImage (Orlando, Fla.) (01.07.2017)
Published in NeuroImage (Orlando, Fla.) (01.07.2017)
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Journal Article
Longitudinal ComBat: A method for harmonizing longitudinal multi-scanner imaging data
Beer, Joanne C., Tustison, Nicholas J., Cook, Philip A., Davatzikos, Christos, Sheline, Yvette I., Shinohara, Russell T., Linn, Kristin A.
Published in NeuroImage (Orlando, Fla.) (15.10.2020)
Published in NeuroImage (Orlando, Fla.) (15.10.2020)
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Journal Article
Large-scale Radiomic Profiling of Recurrent Glioblastoma Identifies an Imaging Predictor for Stratifying Anti-Angiogenic Treatment Response
Kickingereder, Philipp, Götz, Michael, Muschelli, John, Wick, Antje, Neuberger, Ulf, Shinohara, Russell T, Sill, Martin, Nowosielski, Martha, Schlemmer, Heinz-Peter, Radbruch, Alexander, Wick, Wolfgang, Bendszus, Martin, Maier-Hein, Klaus H, Bonekamp, David
Published in Clinical cancer research (01.12.2016)
Published in Clinical cancer research (01.12.2016)
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Journal Article
Linked dimensions of psychopathology and connectivity in functional brain networks
Xia, Cedric Huchuan, Ma, Zongming, Ciric, Rastko, Gu, Shi, Betzel, Richard F., Kaczkurkin, Antonia N., Calkins, Monica E., Cook, Philip A., García de la Garza, Angel, Vandekar, Simon N., Cui, Zaixu, Moore, Tyler M., Roalf, David R., Ruparel, Kosha, Wolf, Daniel H., Davatzikos, Christos, Gur, Ruben C., Gur, Raquel E., Shinohara, Russell T., Bassett, Danielle S., Satterthwaite, Theodore D.
Published in Nature communications (01.08.2018)
Published in Nature communications (01.08.2018)
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Journal Article
Two distinct neuroanatomical subtypes of schizophrenia revealed using machine learning
Chand, Ganesh B, Dwyer, Dominic B, Erus, Guray, Sotiras, Aristeidis, Varol, Erdem, Srinivasan, Dhivya, Doshi, Jimit, Pomponio, Raymond, Pigoni, Alessandro, Dazzan, Paola, Kahn, Rene S, Schnack, Hugo G, Zanetti, Marcus V, Meisenzahl, Eva, Busatto, Geraldo F, Crespo-Facorro, Benedicto, Pantelis, Christos, Wood, Stephen J, Zhuo, Chuanjun, Shinohara, Russell T, Shou, Haochang, Fan, Yong, Gur, Ruben C, Gur, Raquel E, Satterthwaite, Theodore D, Koutsouleris, Nikolaos, Wolf, Daniel H, Davatzikos, Christos
Published in Brain (London, England : 1878) (01.03.2020)
Published in Brain (London, England : 1878) (01.03.2020)
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Journal Article
Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization
Hu, Fengling, Chen, Andrew A., Horng, Hannah, Bashyam, Vishnu, Davatzikos, Christos, Alexander-Bloch, Aaron, Li, Mingyao, Shou, Haochang, Satterthwaite, Theodore D., Yu, Meichen, Shinohara, Russell T.
Published in NeuroImage (Orlando, Fla.) (01.07.2023)
Published in NeuroImage (Orlando, Fla.) (01.07.2023)
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Journal Article
Modular Segregation of Structural Brain Networks Supports the Development of Executive Function in Youth
Baum, Graham L., Ciric, Rastko, Roalf, David R., Betzel, Richard F., Moore, Tyler M., Shinohara, Russell T., Kahn, Ari E., Vandekar, Simon N., Rupert, Petra E., Quarmley, Megan, Cook, Philip A., Elliott, Mark A., Ruparel, Kosha, Gur, Raquel E., Gur, Ruben C., Bassett, Danielle S., Satterthwaite, Theodore D.
Published in Current biology (05.06.2017)
Published in Current biology (05.06.2017)
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Journal Article
Childhood trauma history is linked to abnormal brain connectivity in major depression
Yu, Meichen, Linn, Kristin A., Shinohara, Russell T., Oathes, Desmond J., Cook, Philip A., Duprat, Romain, Moore, Tyler M., Oquendo, Maria A., Phillips, Mary L., McInnis, Melvin, Fava, Maurizio, Trivedi, Madhukar H., McGrath, Patrick, Parsey, Ramin, Weissman, Myrna M., Sheline, Yvette I.
Published in Proceedings of the National Academy of Sciences - PNAS (23.04.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (23.04.2019)
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Journal Article
Spatial distribution of interictal spikes fluctuates over time and localizes seizure onset
Conrad, Erin C, Tomlinson, Samuel B, Wong, Jeremy N, Oechsel, Kelly F, Shinohara, Russell T, Litt, Brian, Davis, Kathryn A, Marsh, Eric D
Published in Brain (London, England : 1878) (01.02.2020)
Published in Brain (London, England : 1878) (01.02.2020)
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Journal Article
Normative brain size variation and brain shape diversity in humans
Reardon, P K, Seidlitz, Jakob, Vandekar, Simon, Liu, Siyuan, Patel, Raihaan, Park, Min Tae M, Alexander-Bloch, Aaron, Clasen, Liv S, Blumenthal, Jonathan D, Lalonde, Francois M, Giedd, Jay N, Gur, Ruben C, Gur, Raquel E, Lerch, Jason P, Chakravarty, M Mallar, Satterthwaite, Theodore D, Shinohara, Russell T, Raznahan, Armin
Published in Science (American Association for the Advancement of Science) (15.06.2018)
Published in Science (American Association for the Advancement of Science) (15.06.2018)
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Journal Article
The central vein sign and its clinical evaluation for the diagnosis of multiple sclerosis: a consensus statement from the North American Imaging in Multiple Sclerosis Cooperative
Sati, Pascal, Oh, Jiwon, Constable, R. Todd, Evangelou, Nikos, Guttmann, Charles R. G., Henry, Roland G., Klawiter, Eric C., Mainero, Caterina, Massacesi, Luca, McFarland, Henry, Nelson, Flavia, Ontaneda, Daniel, Rauscher, Alexander, Rooney, William D., Samaraweera, Amal P. R., Shinohara, Russell T., Sobel, Raymond A., Solomon, Andrew J., Treaba, Constantina A., Wuerfel, Jens, Zivadinov, Robert, Sicotte, Nancy L., Pelletier, Daniel, Reich, Daniel S.
Published in Nature reviews. Neurology (01.12.2016)
Published in Nature reviews. Neurology (01.12.2016)
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Journal Article
Generalized ComBat harmonization methods for radiomic features with multi-modal distributions and multiple batch effects
Horng, Hannah, Singh, Apurva, Yousefi, Bardia, Cohen, Eric A., Haghighi, Babak, Katz, Sharyn, Noël, Peter B., Shinohara, Russell T., Kontos, Despina
Published in Scientific reports (16.03.2022)
Published in Scientific reports (16.03.2022)
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Journal Article
Treatment pathway of bone sarcoma in children, adolescents, and young adults
Reed, Damon R., Hayashi, Masanori, Wagner, Lars, Binitie, Odion, Steppan, Diana A., Brohl, Andrew S., Shinohara, Eric T., Bridge, Julia A., Loeb, David M., Borinstein, Scott C., Isakoff, Michael S.
Published in Cancer (15.06.2017)
Published in Cancer (15.06.2017)
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Journal Article