The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform
Smith, Jennifer R, Hayman, G Thomas, Wang, Shur-Jen, Laulederkind, Stanley J F, Hoffman, Matthew J, Kaldunski, Mary L, Tutaj, Monika, Thota, Jyothi, Nalabolu, Harika S, Ellanki, Santoshi L R, Tutaj, Marek A, De Pons, Jeffrey L, Kwitek, Anne E, Dwinell, Melinda R, Shimoyama, Mary E
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease
Shimoyama, Mary, De Pons, Jeff, Hayman, G Thomas, Laulederkind, Stanley J F, Liu, Weisong, Nigam, Rajni, Petri, Victoria, Smith, Jennifer R, Tutaj, Marek, Wang, Shur-Jen, Worthey, Elizabeth, Dwinell, Melinda, Jacob, Howard
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
Next generation phenotyping using the unified medical language system
Adamusiak, Tomasz, Shimoyama, Naoki, Shimoyama, Mary
Published in JMIR medical informatics (01.01.2014)
Published in JMIR medical informatics (01.01.2014)
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Journal Article
FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources
Clarke, Daniel J.B., Wang, Lily, Jones, Alex, Wojciechowicz, Megan L., Torre, Denis, Jagodnik, Kathleen M., Jenkins, Sherry L., McQuilton, Peter, Flamholz, Zachary, Silverstein, Moshe C., Schilder, Brian M., Robasky, Kimberly, Castillo, Claris, Idaszak, Ray, Ahalt, Stanley C., Williams, Jason, Schurer, Stephan, Cooper, Daniel J., de Miranda Azevedo, Ricardo, Klenk, Juergen A., Haendel, Melissa A., Nedzel, Jared, Avillach, Paul, Shimoyama, Mary E., Harris, Rayna M., Gamble, Meredith, Poten, Rudy, Charbonneau, Amanda L., Larkin, Jennie, Brown, C. Titus, Bonazzi, Vivien R., Dumontier, Michel J., Sansone, Susanna-Assunta, Ma’ayan, Avi
Published in Cell systems (27.11.2019)
Published in Cell systems (27.11.2019)
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Journal Article
Exploring human disease using the Rat Genome Database
Shimoyama, Mary, Laulederkind, Stanley J F, De Pons, Jeff, Nigam, Rajni, Smith, Jennifer R, Tutaj, Marek, Petri, Victoria, Hayman, G Thomas, Wang, Shur-Jen, Ghiasvand, Omid, Thota, Jyothi, Dwinell, Melinda R
Published in Disease models & mechanisms (01.10.2016)
Published in Disease models & mechanisms (01.10.2016)
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Journal Article
Predicting instances of pathway ontology classes for pathway integration
Wang, Lucy Lu, Thomas Hayman, G, Smith, Jennifer R, Tutaj, Monika, Shimoyama, Mary E, Gennari, John H
Published in Journal of biomedical semantics (13.06.2019)
Published in Journal of biomedical semantics (13.06.2019)
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Journal Article
The genome sequence of the Norway rat, Rattus norvegicus Berkenhout 1769
Howe, Kerstin, Dwinell, Melinda, Shimoyama, Mary, Corton, Craig, Betteridge, Emma, Dove, Alexander, Quail, Michael A., Smith, Michelle, Saba, Laura, Williams, Robert W., Chen, Hao, Kwitek, Anne E., McCarthy, Shane A., Uliano-Silva, Marcela, Chow, William, Tracey, Alan, Torrance, James, Sims, Ying, Challis, Richard, Threlfall, Jonathan, Blaxter, Mark
Published in Wellcome open research (2021)
Published in Wellcome open research (2021)
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Journal Article
Augmenting the disease ontology improves and unifies disease annotations across species
Bello, Susan M., Shimoyama, Mary, Mitraka, Elvira, Laulederkind, Stanley J. F., Smith, Cynthia L., Eppig, Janan T., Schriml, Lynn M.
Published in Disease models & mechanisms (01.01.2018)
Published in Disease models & mechanisms (01.01.2018)
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Journal Article
Structural libraries of protein models for multiple species to understand evolution of the renin-angiotensin system
Prokop, Jeremy W, Petri, Victoria, Shimoyama, Mary E, Watanabe, Ingrid K.M, Casarini, Dulce E, Leeper, Thomas C, Bilinovich, Stephanie M, Jacob, Howard J, Santos, Robson A.S, Martins, Almir S, Araujo, Fabiano C, Reis, Fernando M, Milsted, Amy
Published in General and comparative endocrinology (01.05.2015)
Published in General and comparative endocrinology (01.05.2015)
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Journal Article
PhenoMiner: a quantitative phenotype database for the laboratory rat, Rattus norvegicus. Application in hypertension and renal disease
Wang, Shur-Jen, Laulederkind, Stanley J F, Hayman, G Thomas, Petri, Victoria, Liu, Weisong, Smith, Jennifer R, Nigam, Rajni, Dwinell, Melinda R, Shimoyama, Mary
Published in Database : the journal of biological databases and curation (2015)
Published in Database : the journal of biological databases and curation (2015)
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Journal Article
Disease, Models, Variants and Altered Pathways—Journeying RGD Through the Magnifying Glass
Petri, Victoria, Hayman, G. Thomas, Tutaj, Marek, Smith, Jennifer R., Laulederkind, Stan, Wang, Shur-Jen, Nigam, Rajni, De Pons, Jeff, Shimoyama, Mary, Dwinell, Melinda R.
Published in Computational and structural biotechnology journal (01.01.2016)
Published in Computational and structural biotechnology journal (01.01.2016)
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Journal Article
A prioritization analysis of disease association by data-mining of functional annotation of human genes
Taniya, Takayuki, Tanaka, Susumu, Yamaguchi-Kabata, Yumi, Hanaoka, Hideki, Yamasaki, Chisato, Maekawa, Harutoshi, Barrero, Roberto A., Lenhard, Boris, Datta, Milton W., Shimoyama, Mary, Bumgarner, Roger, Chakraborty, Ranajit, Hopkinson, Ian, Jia, Libin, Hide, Winston, Auffray, Charles, Minoshima, Shinsei, Imanishi, Tadashi, Gojobori, Takashi
Published in Genomics (San Diego, Calif.) (2012)
Published in Genomics (San Diego, Calif.) (2012)
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Journal Article
RGD: a comparative genomics platform
Shimoyama, Mary, Smith, Jennifer R, Hayman, Tom, Laulederkind, Stan, Lowry, Tim, Nigam, Rajni, Petri, Victoria, Wang, Shur-Jen, Dwinell, Melinda, Jacob, Howard
Published in Human genomics (01.01.2011)
Published in Human genomics (01.01.2011)
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Journal Article
The rat genome database curators: who, what, where, why
Shimoyama, Mary, Hayman, G Thomas, Laulederkind, Stanley J F, Nigam, Rajni, Lowry, Timothy F, Petri, Victoria, Smith, Jennifer R, Wang, Shur-Jen, Munzenmaier, Diane H, Dwinell, Melinda R, Twigger, Simon N, Jacob, Howard J
Published in PLoS computational biology (01.11.2009)
Published in PLoS computational biology (01.11.2009)
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Journal Article
Analysis of disease-associated objects at the Rat Genome Database
Wang, Shur-Jen, Laulederkind, Stanley J F, Hayman, G T, Smith, Jennifer R, Petri, Victoria, Lowry, Timothy F, Nigam, Rajni, Dwinell, Melinda R, Worthey, Elizabeth A, Munzenmaier, Diane H, Shimoyama, Mary, Jacob, Howard J
Published in Database : the journal of biological databases and curation (2013)
Published in Database : the journal of biological databases and curation (2013)
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Journal Article
Clinical diagnostic whole genome sequencing in a paediatric population: experience from our WGS genetics clinic
Worthey, Elizabeth, Bick, David, Dimmock, David, Shimoyama, Mary, Veith, Regan, Kowalski, George, Taylor, Bradley, Wilk, Brandon, Tsaih, Sharon, Harris, Jeremy, Tschannen, Michael, Wendt-Andrae, Jaime, Brodie, Ken, Jacob, Howard
Published in BMC proceedings (01.10.2012)
Published in BMC proceedings (01.10.2012)
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