Tracking the COVID-19 pandemic in Australia using genomics
Seemann, Torsten, Lane, Courtney R, Sherry, Norelle L, Duchene, Sebastian, Gonçalves da Silva, Anders, Caly, Leon, Sait, Michelle, Ballard, Susan A, Horan, Kristy, Schultz, Mark B, Hoang, Tuyet, Easton, Marion, Dougall, Sally, Stinear, Timothy P, Druce, Julian, Catton, Mike, Sutton, Brett, van Diemen, Annaliese, Alpren, Charles, Williamson, Deborah A, Howden, Benjamin P
Published in Nature communications (01.09.2020)
Published in Nature communications (01.09.2020)
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An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance
Sherry, Norelle L, Horan, Kristy A, Ballard, Susan A, Gonҫalves da Silva, Anders, Gorrie, Claire L, Schultz, Mark B, Stevens, Kerrie, Valcanis, Mary, Sait, Michelle L, Stinear, Timothy P, Howden, Benjamin P, Seemann, Torsten
Published in Nature communications (04.01.2023)
Published in Nature communications (04.01.2023)
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Journal Article
Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings
Higgs, Charlie, Sherry, Norelle L, Seemann, Torsten, Horan, Kristy, Walpola, Hasini, Kinsella, Paul, Bond, Katherine, Williamson, Deborah A, Marshall, Caroline, Kwong, Jason C, Grayson, M Lindsay, Stinear, Timothy P, Gorrie, Claire L, Howden, Benjamin P
Published in Nature communications (26.01.2022)
Published in Nature communications (26.01.2022)
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Genomic epidemiology offers high resolution estimates of serial intervals for COVID-19
Stockdale, Jessica E, Susvitasari, Kurnia, Tupper, Paul, Sobkowiak, Benjamin, Mulberry, Nicola, Gonçalves da Silva, Anders, Watt, Anne E, Sherry, Norelle L, Minko, Corinna, Howden, Benjamin P, Lane, Courtney R, Colijn, Caroline
Published in Nature communications (10.08.2023)
Published in Nature communications (10.08.2023)
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Journal Article
Outbreak Investigation Using High-Throughput Genome Sequencing within a Diagnostic Microbiology Laboratory
Sherry, Norelle L, Porter, Jessica L, Seemann, Torsten, Watkins, Andrew, Stinear, Timothy P, Howden, Benjamin P
Published in Journal of Clinical Microbiology (01.05.2013)
Published in Journal of Clinical Microbiology (01.05.2013)
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Journal Article
An implementation science approach to evaluating pathogen whole genome sequencing in public health
Ferdinand, Angeline S, Kelaher, Margaret, Lane, Courtney R, da Silva, Anders Gonçalves, Sherry, Norelle L, Ballard, Susan A, Andersson, Patiyan, Hoang, Tuyet, Denholm, Justin T, Easton, Marion, Howden, Benjamin P, Williamson, Deborah A
Published in Genome medicine (28.07.2021)
Published in Genome medicine (28.07.2021)
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Journal Article
Whole genome sequencing of drug-resistant Mycobacterium tuberculosis isolates in Victoria, Australia
Dorji, Thinley, Horan, Kristy, Sherry, Norelle L, Tay, Ee Laine, Globan, Maria, Viberg, Linda, Bond, Katherine, Denholm, Justin T, Howden, Benjamin P, Andersson, Patiyan
Published in International journal of infectious diseases (01.01.2024)
Published in International journal of infectious diseases (01.01.2024)
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Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in Staphylococcus aureus
Giulieri, Stefano G, Guérillot, Romain, Kwong, Jason C, Monk, Ian R, Hayes, Ashleigh S, Daniel, Diane, Baines, Sarah, Sherry, Norelle L, Holmes, Natasha E, Ward, Peter, Gao, Wei, Seemann, Torsten, Stinear, Timothy P, Howden, Benjamin P
Published in mBio (08.12.2020)
Published in mBio (08.12.2020)
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Hidden Resistances: How Routine Whole-Genome Sequencing Uncovered an Otherwise Undetected blaNDM-1 Gene in Vibrio alginolyticus from Imported Seafood
Morris, Jacqueline M., Mercoulia, Karolina, Valcanis, Mary, Gorrie, Claire L., Sherry, Norelle L., Howden, Benjamin P.
Published in Microbiology spectrum (14.02.2023)
Published in Microbiology spectrum (14.02.2023)
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Journal Article
Daptomycin Resistance Occurs Predominantly in vanA-Type Vancomycin-Resistant Enterococcus faecium in Australasia and Is Associated With Heterogeneous and Novel Mutations
Li, Lucy, Higgs, Charlie, Turner, Adrianna M., Nong, Yi, Gorrie, Claire L., Sherry, Norelle L., Dyet, Kristin H., Seemann, Torsten, Williamson, Deborah A., Stinear, Timothy P., Howden, Benjamin P., Carter, Glen P.
Published in Frontiers in microbiology (20.10.2021)
Published in Frontiers in microbiology (20.10.2021)
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Journal Article
Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study
Lane, Courtney R, Sherry, Norelle L, Porter, Ashleigh F, Duchene, Sebastian, Horan, Kristy, Andersson, Patiyan, Wilmot, Mathilda, Turner, Annabelle, Dougall, Sally, Johnson, Sandra A, Sait, Michelle, Gonçalves da Silva, Anders, Ballard, Susan A, Hoang, Tuyet, Stinear, Timothy P, Caly, Leon, Sintchenko, Vitali, Graham, Rikki, McMahon, Jamie, Smith, David, Leong, Lex EX, Meumann, Ella M, Cooley, Louise, Schwessinger, Benjamin, Rawlinson, William, van Hal, Sebastiaan J, Stephens, Nicola, Catton, Mike, Looker, Clare, Crouch, Simon, Sutton, Brett, Alpren, Charles, Williamson, Deborah A, Seemann, Torsten, Howden, Benjamin P
Published in The Lancet. Public health (01.08.2021)
Published in The Lancet. Public health (01.08.2021)
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Journal Article
Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis
Gorrie, Claire L, Da Silva, Anders Gonçalves, Ingle, Danielle J, Higgs, Charlie, Seemann, Torsten, Stinear, Timothy P, Williamson, Deborah A, Kwong, Jason C, Grayson, M Lindsay, Sherry, Norelle L, Howden, Benjamin P
Published in The Lancet. Microbe (01.11.2021)
Published in The Lancet. Microbe (01.11.2021)
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Journal Article
Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak
Kwong, Jason C, Lane, Courtney R, Romanes, Finn, Gonçalves da Silva, Anders, Easton, Marion, Cronin, Katie, Waters, Mary Jo, Tomita, Takehiro, Stevens, Kerrie, Schultz, Mark B, Baines, Sarah L, Sherry, Norelle L, Carter, Glen P, Mu, Andre, Sait, Michelle, Ballard, Susan A, Seemann, Torsten, Stinear, Timothy P, Howden, Benjamin P
Published in PeerJ (San Francisco, CA) (03.01.2018)
Published in PeerJ (San Francisco, CA) (03.01.2018)
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Journal Article
State-wide genomic epidemiology investigations of COVID-19 in healthcare workers in 2020 Victoria, Australia: Qualitative thematic analysis to provide insights for future pandemic preparedness
Watt, Anne E., Sherry, Norelle L., Andersson, Patiyan, Lane, Courtney R., Johnson, Sandra, Wilmot, Mathilda, Horan, Kristy, Sait, Michelle, Ballard, Susan A., Crachi, Christina, Beck, Dianne J., Marshall, Caroline, Kainer, Marion A., Stuart, Rhonda, McGrath, Christian, Kwong, Jason C., Bass, Pauline, Kelley, Peter G., Crowe, Amy, Guy, Stephen, Macesic, Nenad, Smith, Karen, Williamson, Deborah A., Seemann, Torsten, Howden, Benjamin P.
Published in The Lancet regional health. Western Pacific (01.08.2022)
Published in The Lancet regional health. Western Pacific (01.08.2022)
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Journal Article
Initial and Extended Use of Femoral Versus Nonfemoral Double-Lumen Vascular Catheters and Catheter-Related Infection During Continuous Renal Replacement Therapy
Chua, Horng-Ruey, MMed, Schneider, Antoine G., MD, Sherry, Norelle L., MBBS, Lotfy, Nadiah, MBBS, Chan, Matthew J, Galtieri, Jonathan, MBBS, Wong, Geoffrey R., MBBS, Lipcsey, Miklos, MD, Matte, Cauê de Araujo, MD, Collins, Allison, BSc, Garcia-Alvarez, Mercedes, MBBS, Bellomo, Rinaldo, MD
Published in American journal of kidney diseases (01.12.2014)
Published in American journal of kidney diseases (01.12.2014)
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Journal Article
Multi-site implementation of whole genome sequencing for hospital infection control: A prospective genomic epidemiological analysis
Sherry, Norelle L., Gorrie, Claire L., Kwong, Jason C., Higgs, Charlie, Stuart, Rhonda L., Marshall, Caroline, Ballard, Susan A., Sait, Michelle, Korman, Tony M., Slavin, Monica A., Lee, Robyn S., Graham, Maryza, Leroi, Marcel, Worth, Leon J., Chan, Hiu Tat, Seemann, Torsten, Grayson, M. Lindsay, Howden, Benjamin P.
Published in The Lancet regional health. Western Pacific (01.06.2022)
Published in The Lancet regional health. Western Pacific (01.06.2022)
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Journal Article
Emergence and clonal expansion of a qacA-harbouring sequence type 45 lineage of methicillin-resistant Staphylococcus aureus
Nong, Yi, Steinig, Eike, Pollock, Georgina L, Taiaroa, George, Carter, Glen P, Monk, Ian R, Pang, Stanley, Daley, Denise A, Coombs, Geoffrey W, Forde, Brian M, Harris, Patrick N A, Sherry, Norelle L, Howden, Benjamin P, Pasricha, Shivani, Baines, Sarah L, Williamson, Deborah A
Published in Communications biology (21.03.2024)
Published in Communications biology (21.03.2024)
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Journal Article
Surveillance for SARS‐CoV‐2 variants of concern in the Australian context
Andersson, Patiyan, Sherry, Norelle L, Howden, Benjamin P
Published in Medical journal of Australia (01.06.2021)
Published in Medical journal of Australia (01.06.2021)
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Journal Article
Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016
Sherry, Norelle L, Lane, Courtney R, Kwong, Jason C, Schultz, Mark, Sait, Michelle, Stevens, Kerrie, Ballard, Susan, Gonçalves da Silva, Anders, Seemann, Torsten, Gorrie, Claire L, Stinear, Timothy P, Williamson, Deborah A, Brett, Judith, van Diemen, Annaliese, Easton, Marion, Howden, Benjamin P
Published in Journal of clinical microbiology (01.09.2019)
Published in Journal of clinical microbiology (01.09.2019)
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Journal Article
Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring blaCTX-M-27 in Victoria, Australia
Ingle, Danielle J, Andersson, Patiyan, Valcanis, Mary, Barnden, Jessica, da Silva, Anders Gonçalves, Horan, Kristy A, Seemann, Torsten, Easton, Marion, Williamson, Deborah A, Sherry, Norelle L, Howden, Benjamin P
Published in Antimicrobial agents and chemotherapy (01.12.2020)
Published in Antimicrobial agents and chemotherapy (01.12.2020)
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