Paragraph: a graph-based structural variant genotyper for short-read sequence data
Chen, Sai, Krusche, Peter, Dolzhenko, Egor, Sherman, Rachel M, Petrovski, Roman, Schlesinger, Felix, Kirsche, Melanie, Bentley, David R, Schatz, Michael C, Sedlazeck, Fritz J, Eberle, Michael A
Published in Genome Biology (19.12.2019)
Published in Genome Biology (19.12.2019)
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Journal Article
Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
Aganezov, Sergey, Goodwin, Sara, Sherman, Rachel M, Sedlazeck, Fritz J, Arun, Gayatri, Bhatia, Sonam, Lee, Isac, Kirsche, Melanie, Wappel, Robert, Kramer, Melissa, Kostroff, Karen, Spector, David L, Timp, Winston, McCombie, W Richard, Schatz, Michael C
Published in Genome research (01.09.2020)
Published in Genome research (01.09.2020)
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Journal Article
Assembly and annotation of an Ashkenazi human reference genome
Shumate, Alaina, Zimin, Aleksey V, Sherman, Rachel M, Puiu, Daniela, Wagner, Justin M, Olson, Nathan D, Pertea, Mihaela, Salit, Marc L, Zook, Justin M, Salzberg, Steven L
Published in Genome Biology (02.06.2020)
Published in Genome Biology (02.06.2020)
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Journal Article
Assembly of a pan-genome from deep sequencing of 910 humans of African descent
Sherman, Rachel M, Forman, Juliet, Antonescu, Valentin, Puiu, Daniela, Daya, Michelle, Rafaels, Nicholas, Boorgula, Meher Preethi, Chavan, Sameer, Vergara, Candelaria, Ortega, Victor E, Levin, Albert M, Eng, Celeste, Yazdanbakhsh, Maria, Wilson, James G, Marrugo, Javier, Lange, Leslie A, Williams, L Keoki, Watson, Harold, Ware, Lorraine B, Olopade, Christopher O, Olopade, Olufunmilayo, Oliveira, Ricardo R, Ober, Carole, Nicolae, Dan L, Meyers, Deborah A, Mayorga, Alvaro, Knight-Madden, Jennifer, Hartert, Tina, Hansel, Nadia N, Foreman, Marilyn G, Ford, Jean G, Faruque, Mezbah U, Dunston, Georgia M, Caraballo, Luis, Burchard, Esteban G, Bleecker, Eugene R, Araujo, Maria I, Herrera-Paz, Edwin F, Campbell, Monica, Foster, Cassandra, Taub, Margaret A, Beaty, Terri H, Ruczinski, Ingo, Mathias, Rasika A, Barnes, Kathleen C, Salzberg, Steven L
Published in Nature genetics (01.01.2019)
Published in Nature genetics (01.01.2019)
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Journal Article
Widespread genetic heterogeneity of human ribosomal RNA genes
Fan, Wenjun, Eklund, Eetu, Sherman, Rachel M, Liu, Hester, Pitts, Stephanie, Ford, Brittany, Rajeshkumar, N V, Laiho, Marikki
Published in RNA (Cambridge) (01.04.2022)
Published in RNA (Cambridge) (01.04.2022)
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Journal Article
Guillain-Barré Syndrome Outbreak in Peru 2019 Associated With Campylobacter jejuni Infection
Ramos, Ana P, Leonhard, Sonja E, Halstead, Susan K, Cuba, Mireya A, Castañeda, Carlos C, Dioses, Jose A, Tipismana, Martin A, Abanto, Jesus T, Llanos, Alejandro, Gourlay, Dawn, Grogl, Max, Ramos, Mariana, Rojas, Jesus D, Meza, Rina, Puiu, Daniela, Sherman, Rachel M, Salzberg, Steven L, Simner, Patricia J, Willison, Hugh J, Jacobs, Bart C, Cornblath, David R, Umeres, Hugo F, Pardo, Carlos A
Published in Neurology : neuroimmunology & neuroinflammation (01.03.2021)
Published in Neurology : neuroimmunology & neuroinflammation (01.03.2021)
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Journal Article
Author Correction: Assembly of a pan-genome from deep sequencing of 910 humans of African descent
Sherman, Rachel M, Forman, Juliet, Antonescu, Valentin, Puiu, Daniela, Daya, Michelle, Rafaels, Nicholas, Boorgula, Meher Preethi, Chavan, Sameer, Vergara, Candelaria, Ortega, Victor E, Levin, Albert M, Eng, Celeste, Yazdanbakhsh, Maria, Wilson, James G, Marrugo, Javier, Lange, Leslie A, Williams, L Keoki, Watson, Harold, Ware, Lorraine B, Olopade, Christopher O, Olopade, Olufunmilayo, Oliveira, Ricardo R, Ober, Carole, Nicolae, Dan L, Meyers, Deborah A, Mayorga, Alvaro, Knight-Madden, Jennifer, Hartert, Tina, Hansel, Nadia N, Foreman, Marilyn G, Ford, Jean G, Faruque, Mezbah U, Dunston, Georgia M, Caraballo, Luis, Burchard, Esteban G, Bleecker, Eugene R, Araujo, Maria I, Herrera-Paz, Edwin F, Campbell, Monica, Foster, Cassandra, Taub, Margaret A, Beaty, Terri H, Ruczinski, Ingo, Mathias, Rasika A, Barnes, Kathleen C, Salzberg, Steven L
Published in Nature genetics (01.02.2019)
Published in Nature genetics (01.02.2019)
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Journal Article
Paragraph: A graph-based structural variant genotyper for short-read sequence data
Chen, Sai, Krusche, Peter, Dolzhenko, Egor, Sherman, Rachel M, Petrovski, Roman, Schlesinger, Felix, Kirsche, Michael, Bentley, David R, Schatz, Michael S, Sedlazeck, Fritz J, Eberle, Michael A
Published in bioRxiv (24.09.2019)
Published in bioRxiv (24.09.2019)
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Paper
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
Rozowsky, Joel, Gao, Jiahao, Borsari, Beatrice, Yang, Yucheng T., Galeev, Timur, Gürsoy, Gamze, Epstein, Charles B., Xiong, Kun, Xu, Jinrui, Li, Tianxiao, Liu, Jason, Yu, Keyang, Berthel, Ana, Chen, Zhanlin, Navarro, Fabio, Sun, Maxwell S., Wright, James, Chang, Justin, Cameron, Christopher J.F., Shoresh, Noam, Gaskell, Elizabeth, Drenkow, Jorg, Adrian, Jessika, Aganezov, Sergey, Aguet, François, Balderrama-Gutierrez, Gabriela, Banskota, Samridhi, Corona, Guillermo Barreto, Chhetri, Surya B., Cortez Martins, Gabriel Conte, Danyko, Cassidy, Davis, Carrie A., Farid, Daniel, Farrell, Nina P., Gabdank, Idan, Gofin, Yoel, Gorkin, David U., Gu, Mengting, Hecht, Vivian, Hitz, Benjamin C., Jiang, Yunzhe, Kirsche, Melanie, Kong, Xiangmeng, Lam, Bonita R., Li, Shantao, Li, Bian, Li, Xiqi, Luo, Ruibang, Mackiewicz, Mark, Meng, Ran, Moore, Jill E., Mudge, Jonathan, Nelson, Nicholas, Nusbaum, Chad, Popov, Ioann, Pratt, Henry E., Qiu, Yunjiang, Ramakrishnan, Srividya, Raymond, Joe, Salichos, Leonidas, Scavelli, Alexandra, Schreiber, Jacob M., Sedlazeck, Fritz J., See, Lei Hoon, Sherman, Rachel M., Shi, Xu, Shi, Minyi, Sloan, Cricket Alicia, Strattan, J Seth, Tan, Zhen, Tanaka, Forrest Y., Vlasova, Anna, Wang, Jun, Werner, Jonathan, Williams, Brian, Xu, Min, Yan, Chengfei, Yu, Lu, Zaleski, Christopher, Zhang, Jing, Ardlie, Kristin, Cherry, J Michael, Mendenhall, Eric M., Noble, William S., Weng, Zhiping, Levine, Morgan E., Dobin, Alexander, Wold, Barbara, Mortazavi, Ali, Ren, Bing, Gillis, Jesse, Myers, Richard M., Snyder, Michael P., Choudhary, Jyoti, Milosavljevic, Aleksandar, Schatz, Michael C., Bernstein, Bradley E., Guigó, Roderic, Gingeras, Thomas R., Gerstein, Mark
Published in Cell (30.03.2023)
Published in Cell (30.03.2023)
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Journal Article
Independent data monitoring committees: Preparing a path for the future
Hess, Connie N., MD, MHS, Roe, Matthew T., MD, MHS, Gibson, C. Michael, MD, J. Temple, Robert, MD, Pencina, Michael J., PhD, Zarin, Deborah A., MD, Anstrom, Kevin J., PhD, Alexander, John H., MD, MHS, Sherman, Rachel E., MD, Fiedorek, Fred T., MD, Mahaffey, Kenneth W., MD, Lee, Kerry L., PhD, Chow, Shein-Chung, PhD, Armstrong, Paul W., MD, Califf, Robert M., MD
Published in The American heart journal (01.08.2014)
Published in The American heart journal (01.08.2014)
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