Pycro-Manager: open-source software for customized and reproducible microscope control
Pinkard, Henry, Stuurman, Nico, Ivanov, Ivan E., Anthony, Nicholas M., Ouyang, Wei, Li, Bin, Yang, Bin, Tsuchida, Mark A., Chhun, Bryant, Zhang, Grace, Mei, Ryan, Anderson, Michael, Shepherd, Douglas P., Hunt-Isaak, Ian, Dunn, Raymond L., Jahr, Wiebke, Kato, Saul, Royer, Loïc A., Thiagarajah, Jay R., Eliceiri, Kevin W., Lundberg, Emma, Mehta, Shalin B., Waller, Laura
Published in Nature methods (01.03.2021)
Published in Nature methods (01.03.2021)
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A versatile oblique plane microscope for large-scale and high-resolution imaging of subcellular dynamics
Sapoznik, Etai, Chang, Bo-Jui, Huh, Jaewon, Ju, Robert J, Azarova, Evgenia V, Pohlkamp, Theresa, Welf, Erik S, Broadbent, David, Carisey, Alexandre F, Stehbens, Samantha J, Lee, Kyung-Min, Marín, Arnaldo, Hanker, Ariella B, Schmidt, Jens C, Arteaga, Carlos L, Yang, Bin, Kobayashi, Yoshihiko, Tata, Purushothama Rao, Kruithoff, Rory, Doubrovinski, Konstantin, Shepherd, Douglas P, Millett-Sikking, Alfred, York, Andrew G, Dean, Kevin M, Fiolka, Reto P
Published in eLife (12.11.2020)
Published in eLife (12.11.2020)
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Automatic and adaptive heterogeneous refractive index compensation for light-sheet microscopy
Ryan, Duncan P., Gould, Elizabeth A., Seedorf, Gregory J., Masihzadeh, Omid, Abman, Steven H., Vijayaraghavan, Sukumar, Macklin, Wendy B., Restrepo, Diego, Shepherd, Douglas P.
Published in Nature communications (20.09.2017)
Published in Nature communications (20.09.2017)
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Tutorial: practical considerations for tissue clearing and imaging
Weiss, Kurt R., Voigt, Fabian F., Shepherd, Douglas P., Huisken, Jan
Published in Nature protocols (01.06.2021)
Published in Nature protocols (01.06.2021)
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In Situ Studies of Photoluminescence Quenching and Photocurrent Yield in Quantum Dot Sensitized Single Crystal TiO2 and ZnO Electrodes
Shepherd, Douglas P, Sambur, Justin B, Liang, Yong-Qi, Parkinson, Bruce A, Van Orden, Alan
Published in Journal of physical chemistry. C (04.10.2012)
Published in Journal of physical chemistry. C (04.10.2012)
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Quantitative image reconstruction for microscopy with correct sub-pixel photon statistics
Saurabh, Ayush, Bryan IV, Shep, Fox, Zachary, Brown, Peter, Shepherd, Douglas P., Pressé, Steve
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Toward merging image analysis and gene network discovery from fluorescent in situ hybridization data
Schweiger, Max, Kilic, Zeliha, Moyer, Camille, Jazani, Sina, Kruithoff, Rory, Coullomb, Alexis, Zhou, Lei, Shepherd, Douglas P., Pressé, Steve
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Journal Article
Resolution doubling in light-sheet microscopy via oblique plane structured illumination
Chen, Bingying, Chang, Bo-Jui, Roudot, Philippe, Zhou, Felix, Sapoznik, Etai, Marlar-Pavey, Madeleine, Hayes, James B., Brown, Peter T., Zeng, Chih-Wei, Lambert, Talley, Friedman, Jonathan R., Zhang, Chun-Li, Burnette, Dylan T., Shepherd, Douglas P., Dean, Kevin M., Fiolka, Reto P.
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Decoding the hydrodynamic properties of microscale helical propellers from Brownian fluctuations
Djutanta, Franky, Brown, Peter T, Nainggolan, Bonfilio, Coullomb, Alexis, Radhakrishnan, Sritharini, Sentosa, Jason, Yurke, Bernard, Hariadi, Rizal F, Shepherd, Douglas P
Published in Proceedings of the National Academy of Sciences - PNAS (30.05.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (30.05.2023)
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Journal Article
Navigate: an open-source platform for smart light-sheet microscopy
Marin, Zach, Wang, Xiaoding, Collison, Dax W, McFadden, Conor, Lin, Jinlong, Borges, Hazel M, Chen, Bingying, Mehra, Dushyant, Shen, Qionghua, Gałecki, Seweryn, Daetwyler, Stephan, Sheppard, Steven J, Thien, Phu, Porter, Baylee A, Conzen, Suzanne D, Shepherd, Douglas P, Fiolka, Reto, Dean, Kevin M
Published in Nature methods (11.09.2024)
Published in Nature methods (11.09.2024)
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Journal Article
Miniature structured illumination microscope for in vivo 3D imaging of brain structures with optical sectioning
Supekar, Omkar D, Sias, Andrew, Hansen, Sean R, Martinez, Gabriel, Peet, Graham C, Peng, Xiaoyu, Bright, Victor M, Hughes, Ethan G, Restrepo, Diego, Shepherd, Douglas P, Welle, Cristin G, Gopinath, Juliet T, Gibson, Emily A
Published in Biomedical optics express (01.04.2022)
Published in Biomedical optics express (01.04.2022)
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Journal Article
Computational Proposal for Tracking Multiple Molecules in a Multifocus Confocal Setup
Jazani, Sina, Xu, Lance W. Q., Sgouralis, Ioannis, Shepherd, Douglas P., Pressé, Steve
Published in ACS photonics (20.07.2022)
Published in ACS photonics (20.07.2022)
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