Advanced Heat Map and Clustering Analysis Using Heatmap3
Zhao, Shilin, Guo, Yan, Sheng, Quanhu, Shyr, Yu
Published in BioMed research international (01.01.2014)
Published in BioMed research international (01.01.2014)
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Journal Article
beRBP: binding estimation for human RNA-binding proteins
Yu, Hui, Wang, Jing, Sheng, Quanhu, Liu, Qi, Shyr, Yu
Published in Nucleic acids research (18.03.2019)
Published in Nucleic acids research (18.03.2019)
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Journal Article
Acquisition of aneuploidy drives mutant p53-associated gain-of-function phenotypes
Redman-Rivera, Lindsay N, Shaver, Timothy M, Jin, Hailing, Marshall, Clayton B, Schafer, Johanna M, Sheng, Quanhu, Hongo, Rachel A, Beckermann, Kathryn E, Wheeler, Ferrin C, Lehmann, Brian D, Pietenpol, Jennifer A
Published in Nature communications (31.08.2021)
Published in Nature communications (31.08.2021)
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Journal Article
Illumina human exome genotyping array clustering and quality control
Guo, Yan, He, Jing, Zhao, Shilin, Wu, Hui, Zhong, Xue, Sheng, Quanhu, Samuels, David C, Shyr, Yu, Long, Jirong
Published in Nature protocols (01.11.2014)
Published in Nature protocols (01.11.2014)
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Journal Article
Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data
Guo, Yan, Sheng, Quanhu, Li, Jiang, Ye, Fei, Samuels, David C, Shyr, Yu
Published in PloS one (20.08.2013)
Published in PloS one (20.08.2013)
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Journal Article
RnaSeqSampleSize: real data based sample size estimation for RNA sequencing
Zhao, Shilin, Li, Chung-I, Guo, Yan, Sheng, Quanhu, Shyr, Yu
Published in BMC bioinformatics (30.05.2018)
Published in BMC bioinformatics (30.05.2018)
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Journal Article
Clinical and Biological Insights Into Combined Post- and Pre-Capillary Pulmonary Hypertension
Assad, Tufik R., MD, Hemnes, Anna R., MD, Larkin, Emma K., PhD, Glazer, Andrew M., PhD, Xu, Meng, MS, Wells, Quinn S., MD, MSCI, PharmD, Farber-Eger, Eric H., MS, Sheng, Quanhu, PhD, Shyr, Yu, PhD, Harrell, Frank E., PhD, Newman, John H., MD, Brittain, Evan L., MD, MSCI
Published in Journal of the American College of Cardiology (13.12.2016)
Published in Journal of the American College of Cardiology (13.12.2016)
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Journal Article
A Randomized Phase II Neoadjuvant Study of Cisplatin, Paclitaxel With or Without Everolimus in Patients with Stage II/III Triple-Negative Breast Cancer (TNBC): Responses and Long-term Outcome Correlated with Increased Frequency of DNA Damage Response Gene Mutations, TNBC Subtype, AR Status, and Ki67
Jovanović, Bojana, Mayer, Ingrid A, Mayer, Erica L, Abramson, Vandana G, Bardia, Aditya, Sanders, Melinda E, Kuba, M Gabriela, Estrada, Monica V, Beeler, J Scott, Shaver, Timothy M, Johnson, Kimberly C, Sanchez, Violeta, Rosenbluth, Jennifer M, Dillon, Patrick M, Forero-Torres, Andres, Chang, Jenny C, Meszoely, Ingrid M, Grau, Ana M, Lehmann, Brian D, Shyr, Yu, Sheng, Quanhu, Chen, Sheau-Chiann, Arteaga, Carlos L, Pietenpol, Jennifer A
Published in Clinical cancer research (01.08.2017)
Published in Clinical cancer research (01.08.2017)
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Journal Article
The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data
Guo, Yan, Zhao, Shilin, Sheng, Quanhu, Samuels, David C, Shyr, Yu
Published in BMC genomics (03.10.2017)
Published in BMC genomics (03.10.2017)
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Journal Article
Single cell analysis of cribriform prostate cancer reveals cell intrinsic and tumor microenvironmental pathways of aggressive disease
Wong, Hong Yuen, Sheng, Quanhu, Hesterberg, Amanda B, Croessmann, Sarah, Rios, Brenda L, Giri, Khem, Jackson, Jorgen, Miranda, Adam X, Watkins, Evan, Schaffer, Kerry R, Donahue, Meredith, Winkler, Elizabeth, Penson, David F, Smith, Joseph A, Herrell, S Duke, Luckenbaugh, Amy N, Barocas, Daniel A, Kim, Young J, Graves, Diana, Giannico, Giovanna A, Rathmell, Jeffrey C, Park, Ben H, Gordetsky, Jennifer B, Hurley, Paula J
Published in Nature communications (13.10.2022)
Published in Nature communications (13.10.2022)
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Journal Article
BET bromodomain proteins regulate enhancer function during adipogenesis
Brown, Jonathan D., Feldman, Zachary B., Doherty, Sean P., Reyes, Jaime M., Rahl, Peter B., Lin, Charles Y., Sheng, Quanhu, Duan, Qiong, Federation, Alexander J., Kung, Andrew L., Haldar, Saptarsi M., Young, Richard A., Plutzky, Jorge, Bradner, James E.
Published in Proceedings of the National Academy of Sciences - PNAS (27.02.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (27.02.2018)
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Journal Article
Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument
Tu, Chengjian, Li, Jun, Shen, Shichen, Sheng, Quanhu, Shyr, Yu, Qu, Jun
Published in PloS one (29.07.2016)
Published in PloS one (29.07.2016)
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Journal Article
A streamlined solution for processing, elucidating and quality control of cyclobutane pyrimidine dimer sequencing data
Sheng, Quanhu, Yu, Hui, Duan, Mingrui, Ness, Scott, He, Jiapeng, Kang, Huining, Jiang, Limin, Wyrick, John J, Mao, Peng, Guo, Yan
Published in Nature protocols (01.04.2021)
Published in Nature protocols (01.04.2021)
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Journal Article
Practicability of detecting somatic point mutation from RNA high throughput sequencing data
Sheng, Quanhu, Zhao, Shilin, Li, Chung-I, Shyr, Yu, Guo, Yan
Published in Genomics (San Diego, Calif.) (01.05.2016)
Published in Genomics (San Diego, Calif.) (01.05.2016)
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Journal Article
Plasma miRNAs improve the prediction of coronary atherosclerosis in patients with rheumatoid arthritis
Ormseth, Michelle J., Solus, Joseph F., Sheng, Quanhu, Chen, Sheau-Chiann, Ye, Fei, Wu, Qiong, Oeser, Annette M., Allen, Ryan, Raggi, Paolo, Vickers, Kasey C., Stein, C. Michael
Published in Clinical rheumatology (01.06.2021)
Published in Clinical rheumatology (01.06.2021)
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Journal Article
Beta cell secretion of miR-375 to HDL is inversely associated with insulin secretion
Sedgeman, Leslie R, Beysen, Carine, Ramirez Solano, Marisol A, Michell, Danielle L, Sheng, Quanhu, Zhao, Shilin, Turner, Scott, Linton, MacRae F, Vickers, Kasey C
Published in Scientific reports (07.03.2019)
Published in Scientific reports (07.03.2019)
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Journal Article
LDL delivery of microbial small RNAs drives atherosclerosis through macrophage TLR8
Allen, Ryan M, Michell, Danielle L, Cavnar, Ashley B, Zhu, Wanying, Makhijani, Neil, Contreras, Danielle M, Raby, Chase A, Semler, Elizabeth M, DeJulius, Carlisle, Castleberry, Mark, Zhang, Youmin, Ramirez-Solano, Marisol, Zhao, Shilin, Duvall, Craig, Doran, Amanda C, Sheng, Quanhu, Linton, MacRae F, Vickers, Kasey C
Published in Nature cell biology (01.12.2022)
Published in Nature cell biology (01.12.2022)
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Journal Article
Quantitative assessment of cell population diversity in single-cell landscapes
Liu, Qi, Herring, Charles A, Sheng, Quanhu, Ping, Jie, Simmons, Alan J, Chen, Bob, Banerjee, Amrita, Li, Wei, Gu, Guoqiang, Coffey, Robert J, Shyr, Yu, Lau, Ken S
Published in PLoS biology (01.10.2018)
Published in PLoS biology (01.10.2018)
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Journal Article
Regulation of human salt-sensitivite hypertension by myeloid cell renin-angiotensin-aldosterone system
Ertuglu, Lale A, Pitzer Mutchler, Ashley, Elijovich, Fernando, Laffer, Cheryl L, Sheng, Quanhu, Wanjalla, Celestine N, Kirabo, Annet
Published in Frontiers in physiology (18.07.2023)
Published in Frontiers in physiology (18.07.2023)
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Journal Article