C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles
Lee, Kyung-Ha, Zhang, Peipei, Kim, Hong Joo, Mitrea, Diana M., Sarkar, Mohona, Freibaum, Brian D., Cika, Jaclyn, Coughlin, Maura, Messing, James, Molliex, Amandine, Maxwell, Brian A., Kim, Nam Chul, Temirov, Jamshid, Moore, Jennifer, Kolaitis, Regina-Maria, Shaw, Timothy I., Bai, Bing, Peng, Junmin, Kriwacki, Richard W., Taylor, J. Paul
Published in Cell (20.10.2016)
Published in Cell (20.10.2016)
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Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer’s Disease Progression
Bai, Bing, Wang, Xusheng, Li, Yuxin, Chen, Ping-Chung, Yu, Kaiwen, Dey, Kaushik Kumar, Yarbro, Jay M., Han, Xian, Lutz, Brianna M., Rao, Shuquan, Jiao, Yun, Sifford, Jeffrey M., Han, Jonghee, Wang, Minghui, Tan, Haiyan, Shaw, Timothy I., Cho, Ji-Hoon, Zhou, Suiping, Wang, Hong, Niu, Mingming, Mancieri, Ariana, Messler, Kaitlynn A., Sun, Xiaojun, Wu, Zhiping, Pagala, Vishwajeeth, High, Anthony A., Bi, Wenjian, Zhang, Hui, Chi, Hongbo, Haroutunian, Vahram, Zhang, Bin, Beach, Thomas G., Yu, Gang, Peng, Junmin
Published in Neuron (Cambridge, Mass.) (18.03.2020)
Published in Neuron (Cambridge, Mass.) (18.03.2020)
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The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis
Joo, Joung Hyuck, Wang, Bo, Frankel, Elisa, Ge, Liang, Xu, Lu, Iyengar, Rekha, Li-Harms, XiuJie, Wright, Christopher, Shaw, Timothy I., Lindsten, Tullia, Green, Douglas R., Peng, Junmin, Hendershot, Linda M., Kilic, Fusun, Sze, Ji Ying, Audhya, Anjon, Kundu, Mondira
Published in Molecular cell (19.05.2016)
Published in Molecular cell (19.05.2016)
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Histone H3.3 K27M Accelerates Spontaneous Brainstem Glioma and Drives Restricted Changes in Bivalent Gene Expression
Larson, Jon D., Kasper, Lawryn H., Paugh, Barbara S., Jin, Hongjian, Wu, Gang, Kwon, Chang-Hyuk, Fan, Yiping, Shaw, Timothy I., Silveira, André B., Qu, Chunxu, Xu, Raymond, Zhu, Xiaoyan, Zhang, Junyuan, Russell, Helen R., Peters, Jennifer L., Finkelstein, David, Xu, Beisi, Lin, Tong, Tinkle, Christopher L., Patay, Zoltan, Onar-Thomas, Arzu, Pounds, Stanley B., McKinnon, Peter J., Ellison, David W., Zhang, Jinghui, Baker, Suzanne J.
Published in Cancer cell (14.01.2019)
Published in Cancer cell (14.01.2019)
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JUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells
Li, Yuxin, Wang, Xusheng, Cho, Ji-Hoon, Shaw, Timothy I, Wu, Zhiping, Bai, Bing, Wang, Hong, Zhou, Suiping, Beach, Thomas G, Wu, Gang, Zhang, Jinghui, Peng, Junmin
Published in Journal of proteome research (01.07.2016)
Published in Journal of proteome research (01.07.2016)
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A Key Role for the Ubiquitin Ligase UBR4 in Myofiber Hypertrophy in Drosophila and Mice
Hunt, Liam C., Stover, Jared, Haugen, Benard, Shaw, Timothy I., Li, Yuxin, Pagala, Vishwajeeth R., Finkelstein, David, Barton, Elisabeth R., Fan, Yiping, Labelle, Myriam, Peng, Junmin, Demontis, Fabio
Published in Cell reports (Cambridge) (30.07.2019)
Published in Cell reports (Cambridge) (30.07.2019)
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Journal Article
An Epigenomic fingerprint of human cancers by landscape interrogation of super enhancers at the constituent level
Liu, Xiang, Gillis, Nancy, Jiang, Chang, McCofie, Anthony, Shaw, Timothy I, Tan, Aik-Choon, Zhao, Bo, Wan, Lixin, Duckett, Derek R, Teng, Mingxiang
Published in PLoS computational biology (01.02.2024)
Published in PLoS computational biology (01.02.2024)
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Discovery of immunotherapy targets for pediatric solid and brain tumors by exon-level expression
Shaw, Timothy I., Wagner, Jessica, Tian, Liqing, Wickman, Elizabeth, Poudel, Suresh, Wang, Jian, Paul, Robin, Koo, Selene C., Lu, Meifen, Sheppard, Heather, Fan, Yiping, O’Neill, Francis H., Lau, Ching C., Zhou, Xin, Zhang, Jinghui, Gottschalk, Stephen
Published in Nature communications (03.05.2024)
Published in Nature communications (03.05.2024)
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Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes
Wang, Hong, Diaz, Alexander K., Shaw, Timothy I., Li, Yuxin, Niu, Mingming, Cho, Ji-Hoon, Paugh, Barbara S., Zhang, Yang, Sifford, Jeffrey, Bai, Bing, Wu, Zhiping, Tan, Haiyan, Zhou, Suiping, Hover, Laura D., Tillman, Heather S., Shirinifard, Abbas, Thiagarajan, Suresh, Sablauer, Andras, Pagala, Vishwajeeth, High, Anthony A., Wang, Xusheng, Li, Chunliang, Baker, Suzanne J., Peng, Junmin
Published in Nature communications (16.08.2019)
Published in Nature communications (16.08.2019)
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Metabolomic and transcriptomic analysis reveals endogenous substrates and metabolic adaptation in rats lacking Abcg2 and Abcb1a transporters
Ganguly, Samit, Finkelstein, David, Shaw, Timothy I, Michalek, Ryan D, Zorn, Kimberly M, Ekins, Sean, Yasuda, Kazuto, Fukuda, Yu, Schuetz, John D, Mukherjee, Kamalika, Schuetz, Erin G
Published in PloS one (13.07.2021)
Published in PloS one (13.07.2021)
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Integrated stem cell signature and cytomolecular risk determination in pediatric acute myeloid leukemia
Huang, Benjamin J., Smith, Jenny L., Farrar, Jason E., Wang, Yi-Cheng, Umeda, Masayuki, Ries, Rhonda E., Leonti, Amanda R., Crowgey, Erin, Furlan, Scott N., Tarlock, Katherine, Armendariz, Marcos, Liu, Yanling, Shaw, Timothy I., Wei, Lisa, Gerbing, Robert B., Cooper, Todd M., Gamis, Alan S., Aplenc, Richard, Kolb, E. Anders, Rubnitz, Jeffrey, Ma, Jing, Klco, Jeffery M., Ma, Xiaotu, Alonzo, Todd A., Triche, Timothy, Meshinchi, Soheil
Published in Nature communications (19.09.2022)
Published in Nature communications (19.09.2022)
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PATH-SURVEYOR: pathway level survival enquiry for immuno-oncology and drug repurposing
Obermayer, Alyssa N, Chang, Darwin, Nobles, Gabrielle, Teng, Mingxiang, Tan, Aik-Choon, Wang, Xuefeng, Chen, Y Ann, Eschrich, Steven, Rodriguez, Paulo C, Grass, G Daniel, Meshinchi, Soheil, Tarhini, Ahmad, Chen, Dung-Tsa, Shaw, Timothy I
Published in BMC bioinformatics (28.06.2023)
Published in BMC bioinformatics (28.06.2023)
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The landscape of coding RNA editing events in pediatric cancer
Wen, Ji, Rusch, Michael, Brady, Samuel W, Shao, Ying, Edmonson, Michael N, Shaw, Timothy I, Powers, Brent B, Tian, Liqing, Easton, John, Mullighan, Charles G, Gruber, Tanja, Ellison, David, Zhang, Jinghui
Published in BMC cancer (17.11.2021)
Published in BMC cancer (17.11.2021)
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Isotope Labeling-Assisted Evaluation of Hydrophilic and Hydrophobic Liquid Chromatograph–Mass Spectrometry for Metabolomics Profiling
Xie, Boer, Wang, Yuanyuan, Jones, Drew R, Dey, Kaushik Kumar, Wang, Xusheng, Li, Yuxin, Cho, Ji-Hoon, Shaw, Timothy I, Tan, Haiyan, Peng, Junmin
Published in Analytical chemistry (Washington) (17.07.2018)
Published in Analytical chemistry (Washington) (17.07.2018)
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The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis
Joo, Joung Hyuck, Wang, Bo, Frankel, Elisa, Ge, Liang, Xu, Lu, Iyengar, Rekha, Li-Harms, XiuJie, Wright, Christopher, Shaw, Timothy I., Lindsten, Tullia, Green, Douglas R., Peng, Junmin, Hendershot, Linda M., Kilic, Fusun, Sze, Ji Ying, Audhya, Anjon, Kundu, Mondira
Published in Molecular cell (16.06.2016)
Published in Molecular cell (16.06.2016)
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Multi-omics approach to identifying isoform variants as therapeutic targets in cancer patients
Shaw, Timothy I, Zhao, Bi, Li, Yuxin, Wang, Hong, Wang, Liang, Manley, Brandon, Stewart, Paul A, Karolak, Aleksandra
Published in Frontiers in oncology (24.11.2022)
Published in Frontiers in oncology (24.11.2022)
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Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis)
Shaw, Timothy I, Srivastava, Anuj, Chou, Wen-Chi, Liu, Liang, Hawkinson, Ann, Glenn, Travis C, Adams, Rick, Schountz, Tony
Published in PloS one (15.11.2012)
Published in PloS one (15.11.2012)
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Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions
Wong, Kelvin, Shaw, Timothy I, Oladeinde, Adelumola, Glenn, Travis C, Oakley, Brian, Molina, Marirosa
Published in Frontiers in microbiology (13.04.2016)
Published in Frontiers in microbiology (13.04.2016)
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Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL)
Shaw, Timothy I., Dong, Li, Tian, Liqing, Qian, Chenxi, Liu, Yu, Ju, Bensheng, High, Anthony, Kavdia, Kanisha, Pagala, Vishwajeeth R., Shaner, Bridget, Pei, Deqing, Easton, John, Janke, Laura J., Porter, Shaina N., Ma, Xiaotu, Cheng, Cheng, Pruett-Miller, Shondra M., Choi, John, Yu, Jiyang, Peng, Junmin, Gu, Wei, Look, A. Thomas, Downing, James R., Zhang, Jinghui
Published in Scientific reports (04.03.2021)
Published in Scientific reports (04.03.2021)
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DRPPM-EASY: A Web-Based Framework for Integrative Analysis of Multi-Omics Cancer Datasets
Obermayer, Alyssa, Dong, Li, Hu, Qianqian, Golden, Michael, Noble, Jerald D, Rodriguez, Paulo, Robinson, Timothy J, Teng, Mingxiang, Tan, Aik-Choon, Shaw, Timothy I
Published in Biology (Basel, Switzerland) (08.02.2022)
Published in Biology (Basel, Switzerland) (08.02.2022)
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