Durum wheat genome highlights past domestication signatures and future improvement targets
Maccaferri, Marco, Harris, Neil S., Twardziok, Sven O., Pasam, Raj K., Gundlach, Heidrun, Spannagl, Manuel, Ormanbekova, Danara, Lux, Thomas, Prade, Verena M., Milner, Sara G., Himmelbach, Axel, Mascher, Martin, Bagnaresi, Paolo, Faccioli, Primetta, Cozzi, Paolo, Lauria, Massimiliano, Lazzari, Barbara, Stella, Alessandra, Manconi, Andrea, Gnocchi, Matteo, Moscatelli, Marco, Avni, Raz, Deek, Jasline, Biyiklioglu, Sezgi, Frascaroli, Elisabetta, Corneti, Simona, Salvi, Silvio, Sonnante, Gabriella, Desiderio, Francesca, Marè, Caterina, Crosatti, Cristina, Mica, Erica, Özkan, Hakan, Kilian, Benjamin, De Vita, Pasquale, Marone, Daniela, Joukhadar, Reem, Mazzucotelli, Elisabetta, Nigro, Domenica, Gadaleta, Agata, Chao, Shiaoman, Faris, Justin D., Melo, Arthur T. O., Pumphrey, Mike, Pecchioni, Nicola, Milanesi, Luciano, Wiebe, Krystalee, Ens, Jennifer, MacLachlan, Ron P., Clarke, John M., Sharpe, Andrew G., Koh, Chu Shin, Liang, Kevin Y. H., Taylor, Gregory J., Knox, Ron, Budak, Hikmet, Mastrangelo, Anna M., Xu, Steven S., Stein, Nils, Hale, Iago, Distelfeld, Assaf, Hayden, Matthew J., Tuberosa, Roberto, Walkowiak, Sean, Mayer, Klaus F. X., Ceriotti, Aldo, Pozniak, Curtis J., Cattivelli, Luigi
Published in Nature genetics (01.05.2019)
Published in Nature genetics (01.05.2019)
Get full text
Journal Article
Long-read sequence assembly: a technical evaluation in barley
Mascher, Martin, Wicker, Thomas, Jenkins, Jerry, Plott, Christopher, Lux, Thomas, Koh, Chu Shin, Ens, Jennifer, Gundlach, Heidrun, Boston, Lori B, Tulpová, Zuzana, Holden, Samuel, Hernández-Pinzón, Inmaculada, Scholz, Uwe, Mayer, Klaus F X, Spannagl, Manuel, Pozniak, Curtis J, Sharpe, Andrew G, Šimková, Hana, Moscou, Matthew J, Grimwood, Jane, Schmutz, Jeremy, Stein, Nils
Published in The Plant cell (19.07.2021)
Published in The Plant cell (19.07.2021)
Get full text
Journal Article
Wild emmer genome architecture and diversity elucidate wheat evolution and domestication
Avni, Raz, Nave, Moran, Barad, Omer, Baruch, Kobi, Twardziok, Sven O., Gundlach, Heidrun, Hale, Iago, Mascher, Martin, Spannagl, Manuel, Wiebe, Krystalee, Jordan, Katherine W., Golan, Guy, Deek, Jasline, Ben-Zvi, Batsheva, Ben-Zvi, Gil, Himmelbach, Axel, MacLachlan, Ron P., Sharpe, Andrew G., Fritz, Allan, Ben-David, Roi, Budak, Hikmet, Fahima, Tzion, Korol, Abraham, Faris, Justin D., Hernandez, Alvaro, Mikel, Mark A., Levy, Avraham A., Steffenson, Brian, Maccaferri, Marco, Tuberosa, Roberto, Cattivelli, Luigi, Faccioli, Primetta, Ceriotti, Aldo, Kashkush, Khalil, Pourkheirandish, Mohammad, Komatsuda, Takao, Eilam, Tamar, Sela, Hanan, Sharon, Amir, Ohad, Nir, Chamovitz, Daniel A., Mayer, Klaus F.X., Stein, Nils, Ronen, Gil, Peleg, Zvi, Pozniak, Curtis J., Akhunov, Eduard D., Distelfeld, Assaf
Published in Science (American Association for the Advancement of Science) (07.07.2017)
Published in Science (American Association for the Advancement of Science) (07.07.2017)
Get full text
Journal Article
The pangenome of an agronomically important crop plant Brassica oleracea
Golicz, Agnieszka A., Bayer, Philipp E., Barker, Guy C., Edger, Patrick P., Kim, HyeRan, Martinez, Paula A., Chan, Chon Kit Kenneth, Severn-Ellis, Anita, McCombie, W. Richard, Parkin, Isobel A. P., Paterson, Andrew H., Pires, J. Chris, Sharpe, Andrew G., Tang, Haibao, Teakle, Graham R., Town, Christopher D., Batley, Jacqueline, Edwards, David
Published in Nature communications (11.11.2016)
Published in Nature communications (11.11.2016)
Get full text
Journal Article
Polyploid Evolution of the Brassicaceae during the Cenozoic Era
Kagale, Sateesh, Robinson, Stephen J., Nixon, John, Xiao, Rong, Huebert, Terry, Condie, Janet, Kessler, Dallas, Clarke, Wayne E., Edger, Patrick P., Links, Matthew G., Sharpe, Andrew G., Parkin, Isobel A.P.
Published in The Plant cell (01.07.2014)
Published in The Plant cell (01.07.2014)
Get full text
Journal Article
A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes
Jordan, Katherine W, Wang, Shichen, Lun, Yanni, Gardiner, Laura-Jayne, MacLachlan, Ron, Hucl, Pierre, Wiebe, Krysta, Wong, Debbie, Forrest, Kerrie L, Sharpe, Andrew G, Sidebottom, Christine Hd, Hall, Neil, Toomajian, Christopher, Close, Timothy, Dubcovsky, Jorge, Akhunova, Alina, Talbert, Luther, Bansal, Urmil K, Bariana, Harbans S, Hayden, Matthew J, Pozniak, Curtis, Jeddeloh, Jeffrey A, Hall, Anthony, Akhunov, Eduard
Published in Genome Biology (26.02.2015)
Published in Genome Biology (26.02.2015)
Get full text
Journal Article
genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads
Wang, Zhiwen, Hobson, Neil, Galindo, Leonardo, Zhu, Shilin, Shi, Daihu, McDill, Joshua, Yang, Linfeng, Hawkins, Simon, Neutelings, Godfrey, Datla, Raju, Lambert, Georgina, Galbraith, David W, Grassa, Christopher J, Geraldes, Armando, Cronk, Quentin C, Cullis, Christopher, Dash, Prasanta K, Kumar, Polumetla A, Cloutier, Sylvie, Sharpe, Andrew G, Wong, Gane K.‐S, Wang, Jun, Deyholos, Michael K
Published in The Plant journal : for cell and molecular biology (01.11.2012)
Published in The Plant journal : for cell and molecular biology (01.11.2012)
Get full text
Journal Article
Enhancing rice growth and yield with weed endophytic bacteria Alcaligenes faecalis and Metabacillus indicus under reduced chemical fertilization
Fatema, Kaniz, Mahmud, Nur Uddin, Gupta, Dipali Rani, Siddiqui, Md Nurealam, Sakif, Tahsin Islam, Sarker, Aniruddha, Sharpe, Andrew G, Islam, Tofazzal
Published in PloS one (16.05.2024)
Published in PloS one (16.05.2024)
Get full text
Journal Article
Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications
Kudapa, Himabindu, Azam, Sarwar, Sharpe, Andrew G, Taran, Bunyamin, Li, Rong, Deonovic, Benjamin, Cameron, Connor, Farmer, Andrew D, Cannon, Steven B, Varshney, Rajeev K, Lukens, Lewis
Published in PloS one (23.01.2014)
Published in PloS one (23.01.2014)
Get full text
Journal Article
Improvement of growth, yield and associated bacteriome of rice by the application of probiotic Paraburkholderia and Delftia
Islam, Tofazzal, Fatema, Hoque, M Nazmul, Gupta, Dipali Rani, Mahmud, Nur Uddin, Sakif, Tahsin Islam, Sharpe, Andrew G
Published in Frontiers in microbiology (14.07.2023)
Published in Frontiers in microbiology (14.07.2023)
Get full text
Journal Article
WheatCRISPR: a web-based guide RNA design tool for CRISPR/Cas9-mediated genome editing in wheat
Cram, Dustin, Kulkarni, Manoj, Buchwaldt, Miles, Rajagopalan, Nandhakishore, Bhowmik, Pankaj, Rozwadowski, Kevin, Parkin, Isobel A P, Sharpe, Andrew G, Kagale, Sateesh
Published in BMC plant biology (06.11.2019)
Published in BMC plant biology (06.11.2019)
Get full text
Journal Article
Deep neural networks for genomic prediction do not estimate marker effects
Ubbens, Jordan, Parkin, Isobel, Eynck, Christina, Stavness, Ian, Sharpe, Andrew G.
Published in The plant genome (01.11.2021)
Published in The plant genome (01.11.2021)
Get full text
Journal Article
Biological control potential of worrisome wheat blast disease by the seed endophytic bacilli
Surovy, Musrat Zahan, Dutta, Sudipta, Mahmud, Nur Uddin, Gupta, Dipali Rani, Farhana, Tarin, Paul, Sanjay Kumar, Win, Joe, Dunlap, Christopher, Oliva, Ricardo, Rahman, Mahfuzur, Sharpe, Andrew G, Islam, Tofazzal
Published in Frontiers in microbiology (11.03.2024)
Published in Frontiers in microbiology (11.03.2024)
Get full text
Journal Article
A systems genomics and genetics approach to identify the genetic regulatory network for lignin content in Brassica napus seeds
Zhang, Wentao, Higgins, Erin E, Robinson, Stephen J, Clarke, Wayne E, Boyle, Kerry, Sharpe, Andrew G, Fobert, Pierre R, Parkin, Isobel A P
Published in Frontiers in plant science (05.06.2024)
Published in Frontiers in plant science (05.06.2024)
Get full text
Journal Article
Sources of genomic diversity in the self-fertile plant pathogen, Sclerotinia sclerotiorum, and consequences for resistance breeding
Buchwaldt, Lone, Garg, Harsh, Puri, Krishna D, Durkin, Jonathan, Adam, Jennifer, Harrington, Myrtle, Liabeuf, Debora, Davies, Alan, Hegedus, Dwayne D, Sharpe, Andrew G, Gali, Krishna Kishore
Published in PloS one (07.02.2022)
Published in PloS one (07.02.2022)
Get full text
Journal Article
Mapping quantitative trait loci associated with leaf rust resistance in five spring wheat populations using single nucleotide polymorphism markers
Bokore, Firdissa E, Knox, Ron E, Cuthbert, Richard D, Pozniak, Curtis J, McCallum, Brent D, N'Diaye, Amidou, DePauw, Ron M, Campbell, Heather L, Munro, Catherine, Singh, Arti, Hiebert, Colin W, McCartney, Curt A, Sharpe, Andrew G, Singh, Asheesh K, Spaner, Dean, Fowler, D B, Ruan, Yuefeng, Berraies, Samia, Meyer, Brad
Published in PloS one (08.04.2020)
Published in PloS one (08.04.2020)
Get full text
Journal Article
De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes
Links, Matthew G, Holub, Eric, Jiang, Rays H Y, Sharpe, Andrew G, Hegedus, Dwayne, Beynon, Elena, Sillito, Dean, Clarke, Wayne E, Uzuhashi, Shihomi, Borhan, Mohammad H
Published in BMC genomics (13.10.2011)
Published in BMC genomics (13.10.2011)
Get full text
Journal Article
A mutant Brassica napus (canola) population for the identification of new genetic diversity via TILLING and next generation sequencing
Gilchrist, Erin J, Sidebottom, Christine H D, Koh, Chu Shin, Macinnes, Tanya, Sharpe, Andrew G, Haughn, George W
Published in PloS one (20.12.2013)
Published in PloS one (20.12.2013)
Get full text
Journal Article
Assessing Diversity in the Camelina Genus Provides Insights into the Genome Structure of Camelina sativa
Chaudhary, Raju, Koh, Chu Shin, Kagale, Sateesh, Tang, Lily, Wu, Siu Wah, Lv, Zhenling, Mason, Annaliese S, Sharpe, Andrew G, Diederichsen, Axel, Parkin, Isobel A P
Published in G3 : genes - genomes - genetics (01.04.2020)
Published in G3 : genes - genomes - genetics (01.04.2020)
Get full text
Journal Article