Improved Coreceptor Usage Prediction and Genotypic Monitoring of R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency Virus Type 1 env V3 Loop Sequences
Jensen, Mark A, Li, Fu-Sheng, van 't Wout, Angélique B, Nickle, David C, Shriner, Daniel, He, Hong-Xia, McLaughlin, Sherry, Shankarappa, Raj, Margolick, Joseph B, Mullins, James I
Published in Journal of Virology (01.12.2003)
Published in Journal of Virology (01.12.2003)
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Consistent Viral Evolutionary Changes Associated with the Progression of Human Immunodeficiency Virus Type 1 Infection
Shankarappa, R, Margolick, J B, Gange, S J, Rodrigo, A G, Upchurch, D, Farzadegan, H, Gupta, P, Rinaldo, C R, Learn, G H, He, X, Huang, X L, Mullins, J I
Published in Journal of Virology (01.12.1999)
Published in Journal of Virology (01.12.1999)
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Tat Protein of Human Immunodeficiency Virus Type 1 Subtype C Strains Is a Defective Chemokine
RANGA, Udaykumar, SHANKARAPPA, Raj, PRASAD, Vinayaka R, SIDDAPPA, Nagadenahalli B, RAMAKRISHNA, Lakshmi, NAGENDRAN, Ramalingam, MAHALINGAM, Marthandan, MAHADEVAN, Anita, JAYASURYAN, Narayana, SATISHCHANDRA, Parthasarathy, SHANKAR, Susarla K
Published in Journal of Virology (01.03.2004)
Published in Journal of Virology (01.03.2004)
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Cellular immune responses and viral diversity in individuals treated during acute and early HIV-1 infection
Altfeld, M, Rosenberg, E S, Shankarappa, R, Mukherjee, J S, Hecht, F M, Eldridge, R L, Addo, M M, Poon, S H, Phillips, M N, Robbins, G K, Sax, P E, Boswell, S, Kahn, J O, Brander, C, Goulder, P J, Levy, J A, Mullins, J I, Walker, B D
Published in The Journal of experimental medicine (15.01.2001)
Published in The Journal of experimental medicine (15.01.2001)
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Enhanced Detection of Human Immunodeficiency Virus Type 1-Specific T-Cell Responses to Highly Variable Regions by Using Peptides Based on Autologous Virus Sequences
Altfeld, Marcus, Addo, Marylyn M., Shankarappa, Raj, Lee, Paul K., Allen, Todd M., Yu, Xu G., Rathod, Almas, Harlow, Jason, O'Sullivan, Kristin, Johnston, Mary N., Goulder, Philip J. R., Mullins, James I., Rosenberg, Eric S., Brander, Christian, Korber, Bette, Walker, Bruce D.
Published in Journal of Virology (01.07.2003)
Published in Journal of Virology (01.07.2003)
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Identification of Subtype C Human Immunodeficiency Virus Type 1 by Subtype-Specific PCR and Its Use in the Characterization of Viruses Circulating in the Southern Parts of India
SIDDAPPA, Nagadenahalli B, DASH, Prashanta K, CHATTERJEE, Ramdas, VENU, Kandala, SATISHCHANDRA, Parthasarathy, RAVI, Vasanthapuram, SHANKAR, Susarla K, SHANKARAPPA, Raj, RANGA, Udaykumar, MAHADEVAN, Anita, JAYASURYAN, Narayana, FEN HU, DICE, Bethany, KEEFE, Randy, SATISH, Kadappa S, SATISH, Bhuthiah, SREEKANTHAN, Kuttan
Published in Journal of Clinical Microbiology (01.06.2004)
Published in Journal of Clinical Microbiology (01.06.2004)
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Human Immunodeficiency Virus Type 1 Env Sequences from Calcutta in Eastern India: Identification of Features That Distinguish Subtype C Sequences in India from Other Subtype C Sequences
Shankarappa, R, Chatterjee, R, Learn, G H, Neogi, D, Ding, M, Roy, P, Ghosh, A, Kingsley, L, Harrison, L, Mullins, J I, Gupta, P
Published in Journal of Virology (01.11.2001)
Published in Journal of Virology (01.11.2001)
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Genetic analysis of Toll/Interleukin-1 Receptor (TIR) domain sequences from rhesus macaque Toll-like receptors (TLRs) 1-10 reveals high homology to human TLR/TIR sequences
Sanghavi, Sonali K, Shankarappa, Raj, Reinhart, Todd A
Published in Immunogenetics (New York) (01.12.2004)
Published in Immunogenetics (New York) (01.12.2004)
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Early Induction and Maintenance of Env-Specific T-Helper Cells following Human Immunodeficiency Virus Type 1 Infection
Malhotra, Uma, Holte, Sarah, Zhu, Tuofu, Delpit, Elizabeth, Huntsberry, Claire, Sette, Alessandro, Shankarappa, Raj, Maenza, Janine, Corey, Lawrence, McElrath, M Juliana
Published in Journal of Virology (01.02.2003)
Published in Journal of Virology (01.02.2003)
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Age, sex, and HIV seroprevalence among individuals from different parts of India tested for HIV infection in a nongovernmental setting
Das, Bibhu R, Khadapkar, Rashmi, Giganti, Mark, Sahni, Sumedha, Shankarappa, Raj
Published in AIDS research and human retroviruses (01.11.2006)
Published in AIDS research and human retroviruses (01.11.2006)
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Influence of Random Genetic Drift on Human Immunodeficiency Virus Type 1 env Evolution During Chronic Infection
Shriner, Daniel, Shankarappa, Raj, Jensen, Mark A, Nickle, David C, Mittler, John E, Margolick, Joseph B, Mullins, James I
Published in Genetics (Austin) (01.03.2004)
Published in Genetics (Austin) (01.03.2004)
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HIV Quasispecies and Resampling
Liu, Shan-Lu, Rodrigo, Allen G., Shankarappa, Raj, Learn, Gerald H., Hsu, Li, Davidov, Ori, Zhao, Lue Ping, Mullins, James I., Haynes, Barton F., Pantaleo, Giuseppe, Fauci, Anthony S.
Published in Science (American Association for the Advancement of Science) (26.07.1996)
Published in Science (American Association for the Advancement of Science) (26.07.1996)
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Minimization of genetic distances by the consensus, ancestral, and center-of-tree (COT) sequences for HIV-1 variants within an infected individual and the design of reagents to test immune reactivity
Kesturu, Girish S., Colleton, Bonnie A., Liu, Yi, Heath, Laura, Shaikh, Obaid Shakil, Rinaldo, Charles R., Shankarappa, Raj
Published in Virology (New York, N.Y.) (10.05.2006)
Published in Virology (New York, N.Y.) (10.05.2006)
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Evolution of Human Immunodeficiency Virus Type 1 Envelope Sequences in Infected Individuals with Differing Disease Progression Profiles
Shankarappa, Raj, Gupta, Phalguni, Learn, Gerald H., Rodrigo, Allen G., Rinaldo, Charles R., Gorry, Michael C., Mullins, James I., Nara, Peter L., Ehrlich, Garth D.
Published in Virology (New York, N.Y.) (15.02.1998)
Published in Virology (New York, N.Y.) (15.02.1998)
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Improved Coreceptor Usage Prediction and GenotypicMonitoring of R5-to-X4 Transition by Motif Analysis of HumanImmunodeficiency Virus Type 1 env V3 LoopSequences
Jensen, Mark A., Li, Fu-Sheng, van ’t Wout, Angélique B., Nickle, David C., Shriner, Daniel, He, Hong-Xia, McLaughlin, Sherry, Shankarappa, Raj, Margolick, Joseph B., Mullins, James I.
Published in Journal of virology (15.12.2003)
Published in Journal of virology (15.12.2003)
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