A scalable SCENIC workflow for single-cell gene regulatory network analysis
Van de Sande, Bram, Flerin, Christopher, Davie, Kristofer, De Waegeneer, Maxime, Hulselmans, Gert, Aibar, Sara, Seurinck, Ruth, Saelens, Wouter, Cannoodt, Robrecht, Rouchon, Quentin, Verbeiren, Toni, De Maeyer, Dries, Reumers, Joke, Saeys, Yvan, Aerts, Stein
Published in Nature protocols (01.07.2020)
Published in Nature protocols (01.07.2020)
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Journal Article
Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver
Remmerie, Anneleen, Martens, Liesbet, Thoné, Tinne, Castoldi, Angela, Seurinck, Ruth, Pavie, Benjamin, Roels, Joris, Vanneste, Bavo, De Prijck, Sofie, Vanhockerhout, Mathias, Binte Abdul Latib, Mushida, Devisscher, Lindsey, Hoorens, Anne, Bonnardel, Johnny, Vandamme, Niels, Kremer, Anna, Borghgraef, Peter, Van Vlierberghe, Hans, Lippens, Saskia, Pearce, Edward, Saeys, Yvan, Scott, Charlotte L.
Published in Immunity (Cambridge, Mass.) (15.09.2020)
Published in Immunity (Cambridge, Mass.) (15.09.2020)
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Journal Article
Advances and Opportunities in Single-Cell Transcriptomics for Plant Research
Seyfferth, Carolin, Renema, Jim, Wendrich, Jos R, Eekhout, Thomas, Seurinck, Ruth, Vandamme, Niels, Blob, Bernhard, Saeys, Yvan, Helariutta, Yrjo, Birnbaum, Kenneth D, De Rybel, Bert
Published in Annual review of plant biology (17.06.2021)
Published in Annual review of plant biology (17.06.2021)
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Journal Article
Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics
Sang-Aram, Chananchida, Browaeys, Robin, Seurinck, Ruth, Saeys, Yvan
Published in eLife (24.05.2024)
Published in eLife (24.05.2024)
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Journal Article
The empirical replicability of task-based fMRI as a function of sample size
Bossier, Han, Roels, Sanne P., Seurinck, Ruth, Banaschewski, Tobias, Barker, Gareth J., Bokde, Arun L.W., Quinlan, Erin Burke, Desrivières, Sylvane, Flor, Herta, Grigis, Antoine, Garavan, Hugh, Gowland, Penny, Heinz, Andreas, Ittermann, Bernd, Martinot, Jean-Luc, Artiges, Eric, Nees, Frauke, Orfanos, Dimitri Papadopoulos, Poustka, Luise, Fröhner Dipl-Psych, Juliane H., Smolka, Michael N., Walter, Henrik, Whelan, Robert, Schumann, Gunter, Moerkerke, Beatrijs
Published in NeuroImage (Orlando, Fla.) (15.05.2020)
Published in NeuroImage (Orlando, Fla.) (15.05.2020)
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Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq
Mylka, Viacheslav, Matetovici, Irina, Poovathingal, Suresh, Aerts, Jeroen, Vandamme, Niels, Seurinck, Ruth, Verstaen, Kevin, Hulselmans, Gert, Van den Hoecke, Silvie, Scheyltjens, Isabelle, Movahedi, Kiavash, Wils, Hans, Reumers, Joke, Van Houdt, Jeroen, Aerts, Stein, Saeys, Yvan
Published in Genome Biology (16.02.2022)
Published in Genome Biology (16.02.2022)
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Journal Article
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability
Sonrel, Anthony, Luetge, Almut, Soneson, Charlotte, Mallona, Izaskun, Germain, Pierre-Luc, Knyazev, Sergey, Gilis, Jeroen, Gerber, Reto, Seurinck, Ruth, Paul, Dominique, Sonder, Emanuel, Crowell, Helena L, Fanaswala, Imran, Al-Ajami, Ahmad, Heidari, Elyas, Schmeing, Stephan, Milosavljevic, Stefan, Saeys, Yvan, Mangul, Serghei, Robinson, Mark D
Published in Genome Biology (17.05.2023)
Published in Genome Biology (17.05.2023)
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Journal Article
The Commonality of Neural Networks for Verbal and Visual Short-term Memory
Majerus, Steve, D'Argembeau, Arnaud, Martinez Perez, Trecy, Belayachi, Sanaâ, Van der Linden, Martial, Collette, Fabienne, Salmon, Eric, Seurinck, Ruth, Fias, Wim, Maquet, Pierre
Published in Journal of cognitive neuroscience (01.11.2010)
Published in Journal of cognitive neuroscience (01.11.2010)
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Mirror-Induced Visual Illusion of Hand Movements: A Functional Magnetic Resonance Imaging Study
Matthys, Koen, MD, Smits, Marion, MD, PhD, Van der Geest, Jos N., PhD, Van der Lugt, Aad, MD, PhD, Seurinck, Ruth, MD, PhD, Stam, Henk J., MD, PhD, Selles, Ruud W., PhD
Published in Archives of physical medicine and rehabilitation (01.04.2009)
Published in Archives of physical medicine and rehabilitation (01.04.2009)
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Journal Article
Spontaneous and intentional trait inferences recruit a common mentalizing network to a different degree: Spontaneous inferences activate only its core areas
Ma, Ning, Vandekerckhove, Marie, Van Overwalle, Frank, Seurinck, Ruth, Fias, Wim
Published in Social neuroscience (08.03.2011)
Published in Social neuroscience (08.03.2011)
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Journal Article
Mental Rotation Meets the Motion Aftereffect: The Role of hV5/MT+ in Visual Mental Imagery
Seurinck, Ruth, de Lange, Floris P., Achten, Erik, Vingerhoets, Guy
Published in Journal of cognitive neuroscience (01.06.2011)
Published in Journal of cognitive neuroscience (01.06.2011)
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Journal Article
The Influence of Study-Level Inference Models and Study Set Size on Coordinate-Based fMRI Meta-Analyses
Bossier, Han, Seurinck, Ruth, Kühn, Simone, Banaschewski, Tobias, Barker, Gareth J, Bokde, Arun L W, Martinot, Jean-Luc, Lemaitre, Herve, Paus, Tomáš, Millenet, Sabina, Moerkerke, Beatrijs
Published in Frontiers in neuroscience (18.01.2018)
Published in Frontiers in neuroscience (18.01.2018)
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Journal Article
Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics
Sang-aram, Chananchida, Browaeys, Robin, Seurinck, Ruth, Saeys, Yvan
Published in eLife (24.05.2024)
Published in eLife (24.05.2024)
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Journal Article