Worldwide patterns of genomic variation and admixture in gray wolves
Fan, Zhenxin, Silva, Pedro, Gronau, Ilan, Wang, Shuoguo, Armero, Aitor Serres, Schweizer, Rena M, Ramirez, Oscar, Pollinger, John, Galaverni, Marco, Ortega Del-Vecchyo, Diego, Du, Lianming, Zhang, Wenping, Zhang, Zhihe, Xing, Jinchuan, Vilà, Carles, Marques-Bonet, Tomas, Godinho, Raquel, Yue, Bisong, Wayne, Robert K
Published in Genome research (01.02.2016)
Published in Genome research (01.02.2016)
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Selective single molecule sequencing and assembly of a human Y chromosome of African origin
Kuderna, Lukas F. K., Lizano, Esther, Julià, Eva, Gomez-Garrido, Jessica, Serres-Armero, Aitor, Kuhlwilm, Martin, Alandes, Regina Antoni, Alvarez-Estape, Marina, Juan, David, Simon, Heath, Alioto, Tyler, Gut, Marta, Gut, Ivo, Schierup, Mikkel Heide, Fornas, Oscar, Marques-Bonet, Tomas
Published in Nature communications (02.01.2019)
Published in Nature communications (02.01.2019)
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Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet
Gelabert, Pere, Sandoval-Velasco, Marcela, Serres, Aitor, de Manuel, Marc, Renom, Pere, Margaryan, Ashot, Stiller, Josefin, de-Dios, Toni, Fang, Qi, Feng, Shaohong, Mañosa, Santi, Pacheco, George, Ferrando-Bernal, Manuel, Shi, Guolin, Hao, Fei, Chen, Xianqing, Petersen, Bent, Olsen, Remi-André, Navarro, Arcadi, Deng, Yuan, Dalén, Love, Marquès-Bonet, Tomàs, Zhang, Guojie, Antunes, Agostinho, Gilbert, M. Thomas P., Lalueza-Fox, Carles
Published in Current biology (06.01.2020)
Published in Current biology (06.01.2020)
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Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing
Serres-Armero, Aitor, Povolotskaya, Inna S, Quilez, Javier, Ramirez, Oscar, Santpere, Gabriel, Kuderna, Lukas F K, Hernandez-Rodriguez, Jessica, Fernandez-Callejo, Marcos, Gomez-Sanchez, Daniel, Freedman, Adam H, Fan, Zhenxin, Novembre, John, Navarro, Arcadi, Boyko, Adam, Wayne, Robert, Vilà, Carles, Lorente-Galdos, Belen, Marques-Bonet, Tomas
Published in BMC genomics (19.12.2017)
Published in BMC genomics (19.12.2017)
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Insights from the rescue and breeding management of Cuvier’s gazelle (Gazella cuvieri) through whole‐genome sequencing
Alvarez‐Estape, Marina, Fontsere, Claudia, Serres‐Armero, Aitor, Kuderna, Lukas F. K., Dobrynin, Pavel, Guidara, Héla, Pukazhenthi, Budhan S., Koepfli, Klaus‐Peter, Marques‐Bonet, Tomas, Moreno, Eulalia, Lizano, Esther
Published in Evolutionary applications (01.03.2022)
Published in Evolutionary applications (01.03.2022)
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Interspecific Gene Flow Shaped the Evolution of the Genus Canis
Gopalakrishnan, Shyam, Sinding, Mikkel-Holger S., Ramos-Madrigal, Jazmín, Niemann, Jonas, Samaniego Castruita, Jose A., Vieira, Filipe G., Carøe, Christian, Montero, Marc de Manuel, Kuderna, Lukas, Serres, Aitor, González-Basallote, Víctor Manuel, Liu, Yan-Hu, Wang, Guo-Dong, Marques-Bonet, Tomas, Mirarab, Siavash, Fernandes, Carlos, Gaubert, Philippe, Koepfli, Klaus-Peter, Budd, Jane, Rueness, Eli Knispel, Sillero, Claudio, Heide-Jørgensen, Mads Peter, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P.
Published in Current biology (05.11.2018)
Published in Current biology (05.11.2018)
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A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0)
Kuderna, Lukas F K, Tomlinson, Chad, Hillier, LaDeana W, Tran, Annabel, Fiddes, Ian T, Armstrong, Joel, Laayouni, Hafid, Gordon, David, Huddleston, John, Garcia Perez, Raquel, Povolotskaya, Inna, Serres Armero, Aitor, Gómez Garrido, Jèssica, Ho, Daniel, Ribeca, Paolo, Alioto, Tyler, Green, Richard E, Paten, Benedict, Navarro, Arcadi, Betranpetit, Jaume, Herrero, Javier, Eichler, Evan E, Sharp, Andrew J, Feuk, Lars, Warren, Wesley C, Marques-Bonet, Tomas
Published in Gigascience (01.11.2017)
Published in Gigascience (01.11.2017)
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Y chromosome sequence and epigenomic reconstruction across human populations
Esteller-Cucala, Paula, Palmada-Flores, Marc, Kuderna, Lukas F. K., Fontsere, Claudia, Serres-Armero, Aitor, Dabad, Marc, Torralvo, María, Faella, Armida, Ferrández-Peral, Luis, Llovera, Laia, Fornas, Oscar, Julià, Eva, Ramírez, Erika, González, Irene, Hecht, Jochen, Lizano, Esther, Juan, David, Marquès-Bonet, Tomàs
Published in Communications biology (09.06.2023)
Published in Communications biology (09.06.2023)
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A genomic timescale for placental mammal evolution
Foley, Nicole M, Mason, Victor C, Harris, Andrew J, Bredemeyer, Kevin R, Damas, Joana, Lewin, Harris A, Eizirik, Eduardo, Gatesy, John, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Springer, Mark S, Murphy, William J
Published in Science (American Association for the Advancement of Science) (28.04.2023)
Published in Science (American Association for the Advancement of Science) (28.04.2023)
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Co-analysis of methylation platforms for signatures of biological aging in the domestic dog reveals previously unexplored confounding factors
Armero, Aitor Serres, Buckley, Reuben M, Mboning, Lajoyce, Spatola, Gabriella J, Horvath, Steve, Pellegrini, Matteo, Ostrander, Elaine A
Published in Aging (Albany, NY.) (09.07.2024)
Published in Aging (Albany, NY.) (09.07.2024)
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Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development
Chung, Changuk, Yang, Xiaoxu, Bae, Taejeong, Vong, Keng Ioi, Mittal, Swapnil, Donkels, Catharina, Westley Phillips, H., Li, Zhen, Marsh, Ashley P. L., Breuss, Martin W., Ball, Laurel L., Garcia, Camila Araújo Bernardino, George, Renee D., Gu, Jing, Xu, Mingchu, Barrows, Chelsea, James, Kiely N., Stanley, Valentina, Nidhiry, Anna S., Khoury, Sami, Howe, Gabrielle, Riley, Emily, Xu, Xin, Copeland, Brett, Wang, Yifan, Kim, Se Hoon, Kang, Hoon-Chul, Schulze-Bonhage, Andreas, Haas, Carola A., Urbach, Horst, Prinz, Marco, Limbrick, David D., Gurnett, Christina A., Smyth, Matthew D., Sattar, Shifteh, Nespeca, Mark, Gonda, David D., Imai, Katsumi, Takahashi, Yukitoshi, Chen, Hsin-Hung, Tsai, Jin-Wu, Conti, Valerio, Guerrini, Renzo, Devinsky, Orrin, Silva, Wilson A., Machado, Helio R., Mathern, Gary W., Abyzov, Alexej, Baldassari, Sara, Baulac, Stéphanie, Gleeson, Joseph G.
Published in Nature genetics (01.02.2023)
Published in Nature genetics (01.02.2023)
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Somatic mosaicism reveals clonal distributions of neocortical development
Breuss, Martin W., Yang, Xiaoxu, Schlachetzki, Johannes C. M., Antaki, Danny, Lana, Addison J., Xu, Xin, Chung, Changuk, Chai, Guoliang, Stanley, Valentina, Song, Qiong, Newmeyer, Traci F., Nguyen, An, O’Brien, Sydney, Hoeksema, Marten A., Cao, Beibei, Nott, Alexi, McEvoy-Venneri, Jennifer, Pasillas, Martina P., Barton, Scott T., Copeland, Brett R., Nahas, Shareef, Van Der Kraan, Lucitia, Ding, Yan, Glass, Christopher K., Gleeson, Joseph G.
Published in Nature (London) (28.04.2022)
Published in Nature (London) (28.04.2022)
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Mapping recurrent mosaic copy number variation in human neurons
Sun, Chen, Kathuria, Kunal, Emery, Sarah B., Kim, ByungJun, Burbulis, Ian E., Shin, Joo Heon, Weinberger, Daniel R., Moran, John V., Kidd, Jeffrey M., Mills, Ryan E., McConnell, Michael J.
Published in Nature communications (17.05.2024)
Published in Nature communications (17.05.2024)
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Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia
Zhu, Xiaowei, Zhou, Bo, Pattni, Reenal, Gleason, Kelly, Tan, Chunfeng, Kalinowski, Agnieszka, Sloan, Steven, Fiston-Lavier, Anna-Sophie, Mariani, Jessica, Petrov, Dmitri, Barres, Ben A., Duncan, Laramie, Abyzov, Alexej, Vogel, Hannes, Moran, John V., Vaccarino, Flora M., Tamminga, Carol A., Levinson, Douglas F., Urban, Alexander E.
Published in Nature neuroscience (01.02.2021)
Published in Nature neuroscience (01.02.2021)
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Journal Article
Author Correction: Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia
Zhu, Xiaowei, Zhou, Bo, Pattni, Reenal, Gleason, Kelly, Tan, Chunfeng, Kalinowski, Agnieszka, Sloan, Steven, Fiston-Lavier, Anna-Sophie, Mariani, Jessica, Petrov, Dmitri, Barres, Ben A., Duncan, Laramie, Abyzov, Alexej, Vogel, Hannes, Moran, John V., Vaccarino, Flora M., Tamminga, Carol A., Levinson, Douglas F., Urban, Alexander E.
Published in Nature neuroscience (01.10.2023)
Published in Nature neuroscience (01.10.2023)
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Using evolutionary constraint to define novel candidate driver genes in medulloblastoma
Roy, Ananya, Sakthikumar, Sharadha, Kozyrev, Sergey V, Nordin, Jessika, Pensch, Raphaela, Mäkeläinen, Suvi, Pettersson, Mats, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Forsberg-Nilsson, Karin
Published in Proceedings of the National Academy of Sciences - PNAS (15.08.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (15.08.2023)
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Journal Article
Interspecific Gene Flow Shaped the Evolution of the Genus Canis
Gopalakrishnan, Shyam, Sinding, Mikkel-Holger S., Ramos-Madrigal, Jazmín, Niemann, Jonas, Samaniego Castruita, Jose A., Vieira, Filipe G., Carøe, Christian, de Manuel Montero, Marc, Kuderna, Lukas, Serres, Aitor, González-Basallote, Víctor Manuel, Liu, Yan-Hu, Wang, Guo-Dong, Marques-Bonet, Tomas, Mirarab, Siavash, Fernandes, Carlos, Gaubert, Philippe, Koepfli, Klaus-Peter, Budd, Jane, Rueness, Eli Knispel, Sillero, Claudio, Heide-Jørgensen, Mads Peter, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P.
Published in Current biology (02.12.2019)
Published in Current biology (02.12.2019)
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Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases
Garrison, McKinzie A., Jang, Yeongjun, Bae, Taejeong, Cherskov, Adriana, Emery, Sarah B., Fasching, Liana, Jones, Attila, Moldovan, John B., Molitor, Cindy, Pochareddy, Sirisha, Peters, Mette A., Shin, Joo Heon, Wang, Yifan, Yang, Xiaoxu, Akbarian, Schahram, Chess, Andrew, Gage, Fred H., Gleeson, Joseph G., Kidd, Jeffrey M., McConnell, Michael, Mills, Ryan E., Moran, John V., Park, Peter J., Sestan, Nenad, Urban, Alexander E., Vaccarino, Flora M., Walsh, Christopher A., Weinberger, Daniel R., Wheelan, Sarah J., Abyzov, Alexej
Published in Scientific data (20.11.2023)
Published in Scientific data (20.11.2023)
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Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series
Fages, Antoine, Hanghøj, Kristian, Khan, Naveed, Gaunitz, Charleen, Seguin-Orlando, Andaine, Leonardi, Michela, McCrory Constantz, Christian, Gamba, Cristina, Al-Rasheid, Khaled A.S., Allentoft, Morten, Anthony, David, Baimukhanov, Nurbol, Barrett, James H., Bayarsaikhan, Jamsranjav, Benecke, Norbert, Bernáldez-Sánchez, Eloísa, Berrocal-Rangel, Luis, Boldgiv, Bazartseren, Brem, Gottfried, Brown, Dorcas, Burger, Joachim, Crubézy, Eric, Daugnora, Linas, Davoudi, Hossein, de Barros Damgaard, Peter, de los Ángeles de Chorro y de Villa-Ceballos, María, Deschler-Erb, Sabine, Detry, Cleia, Dill, Nadine, do Mar Oom, Maria, Dohr, Anna, Ellingvåg, Sturla, Erdenebaatar, Diimaajav, Fathi, Homa, Fernández-Rodríguez, Carlos, García-Viñas, Esteban, Germonpré, Mietje, Granado, José D., Hallsson, Jón H., Hemmer, Helmut, Hofreiter, Michael, Kasparov, Aleksei, Khasanov, Mutalib, Khazaeli, Roya, Kosintsev, Pavel, Kubatbek, Tabaldiev, Kuderna, Lukas, Laleh, Haeedeh, Lhuillier, Johanna, Logvin, Andrey, Lõugas, Lembi, Ludwig, Arne, Marques-Bonet, Tomas, Matoso Silva, Raquel, Merz, Victor, Miller, Bryan K., Monchalov, Oleg, Morales, Arturo, Nistelberger, Heidi, Onar, Vedat, Pálsdóttir, Albína H., Pitulko, Vladimir, Pitskhelauri, Konstantin, Pruvost, Mélanie, Rajic Sikanjic, Petra, Rapan Papeša, Anita, Roslyakova, Natalia, Sardari, Alireza, Sauer, Eberhard, Schafberg, Renate, Scheu, Amelie, Schibler, Jörg, Schlumbaum, Angela, Shapiro, Beth, Sheikhi Seno, Shiva, Shevnina, Irina, Southon, John, Star, Bastiaan, Sykes, Naomi, Teegen, Wolf-Rüdiger, Trbojević Vukičević, Tajana, Trixl, Simon, Tumen, Dashzeveg, Undrakhbold, Sainbileg, Usmanova, Emma, Vahdati, Ali, Valenzuela-Lamas, Silvia, Viegas, Catarina, Wallner, Barbara, Weinstock, Jaco, Zaibert, Victor, Clavel, Benoit, Lepetz, Sébastien, Mashkour, Marjan, Helgason, Agnar, Stefánsson, Kári, Willerslev, Eske, Outram, Alan K., Librado, Pablo, Orlando, Ludovic
Published in Cell (30.05.2019)
Published in Cell (30.05.2019)
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Journal Article
DNA methylation clocks for dogs and humans
Horvath, Steve, Lu, Ake T, Haghani, Amin, Zoller, Joseph A, Li, Caesar Z, Lim, Andrea R, Brooke, Robert T, Raj, Ken, Serres-Armero, Aitor, Dreger, Dayna L, Hogan, Andrew N, Plassais, Jocelyn, Ostrander, Elaine A
Published in Proceedings of the National Academy of Sciences - PNAS (24.05.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (24.05.2022)
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