Microbiome changes through ontogeny of a tick pathogen vector
Zolnik, Christine P., Prill, Robert J., Falco, Richard C., Daniels, Thomas J., Kolokotronis, Sergios-Orestis
Published in Molecular ecology (01.10.2016)
Published in Molecular ecology (01.10.2016)
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Journal Article
Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic
Nelson, Chase W, Ardern, Zachary, Goldberg, Tony L, Meng, Chen, Kuo, Chen-Hao, Ludwig, Christina, Kolokotronis, Sergios-Orestis, Wei, Xinzhu
Published in eLife (01.10.2020)
Published in eLife (01.10.2020)
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Journal Article
Using fisher‐contributed secondary fins to fill critical shark‐fisheries data gaps
Quinlan, Jessica R., O'Leary, Shannon J., Fields, Andrew T., Benavides, Martin, Stumpf, Emily, Carcamo, Ramon, Cruz, Joel, Lewis, Derrick, Wade, Beverly, Amato, George, Kolokotronis, Sergios‐Orestis, Clementi, Gina M., Chapman, Demian D.
Published in Conservation biology (01.06.2021)
Published in Conservation biology (01.06.2021)
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Journal Article
Excess mortality in northern Haiti during the 2010 cholera epidemic
Medozile, Macceau, Lovasi, Gina S, Kolokotronis, Sergios-Orestis, Hoepner, Lori A
Published in PLoS neglected tropical diseases (01.12.2023)
Published in PLoS neglected tropical diseases (01.12.2023)
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Journal Article
In the wake of invasion: tracing the historical biogeography of the South American cricetid radiation (Rodentia, Sigmodontinae)
Leite, Rafael N, Kolokotronis, Sergios-Orestis, Almeida, Francisca C, Werneck, Fernanda P, Rogers, Duke S, Weksler, Marcelo
Published in PloS one (25.06.2014)
Published in PloS one (25.06.2014)
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Journal Article
Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element
Benson, Meredith A., Ohneck, Elizabeth A., Ryan, Chanelle, Alonzo, Francis, Smith, Hannah, Narechania, Apurva, Kolokotronis, Sergios‐Orestis, Satola, Sarah W., Uhlemann, Anne‐Catrin, Sebra, Robert, Deikus, Gintaras, Shopsin, Bo, Planet, Paul J., Torres, Victor J.
Published in Molecular microbiology (01.08.2014)
Published in Molecular microbiology (01.08.2014)
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Journal Article
Genomic Epidemiology of Vancomycin-Resistant Enterococcus faecium (VREfm) in Latin America: Revisiting The Global VRE Population Structure
Rios, Rafael, Reyes, Jinnethe, Carvajal, Lina P., Rincon, Sandra, Panesso, Diana, Echeverri, Aura M., Dinh, An, Kolokotronis, Sergios-Orestis, Narechania, Apurva, Tran, Truc T., Munita, Jose M., Murray, Barbara E., Planet, Paul J., Arias, Cesar A., Diaz, Lorena
Published in Scientific reports (27.03.2020)
Published in Scientific reports (27.03.2020)
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Journal Article
Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis
Schierwater, Bernd, Eitel, Michael, Jakob, Wolfgang, Osigus, Hans-Jürgen, Hadrys, Heike, Dellaporta, Stephen L, Kolokotronis, Sergios-Orestis, Desalle, Rob
Published in PLoS biology (01.01.2009)
Published in PLoS biology (01.01.2009)
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Journal Article
Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius
Rosenfeld, Jeffrey A., Reeves, Darryl, Brugler, Mercer R., Narechania, Apurva, Simon, Sabrina, Durrett, Russell, Foox, Jonathan, Shianna, Kevin, Schatz, Michael C., Gandara, Jorge, Afshinnekoo, Ebrahim, Lam, Ernest T., Hastie, Alex R., Chan, Saki, Cao, Han, Saghbini, Michael, Kentsis, Alex, Planet, Paul J., Kholodovych, Vladyslav, Tessler, Michael, Baker, Richard, DeSalle, Rob, Sorkin, Louis N., Kolokotronis, Sergios-Orestis, Siddall, Mark E., Amato, George, Mason, Christopher E.
Published in Nature communications (02.02.2016)
Published in Nature communications (02.02.2016)
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Journal Article
Whole genome sequencing identifies bacterial factors affecting transmission of multidrug-resistant tuberculosis in a high-prevalence setting
Dixit, Avika, Freschi, Luca, Vargas, Roger, Calderon, Roger, Sacchettini, James, Drobniewski, Francis, Galea, Jerome T., Contreras, Carmen, Yataco, Rosa, Zhang, Zibiao, Lecca, Leonid, Kolokotronis, Sergios-Orestis, Mathema, Barun, Farhat, Maha R.
Published in Scientific reports (03.04.2019)
Published in Scientific reports (03.04.2019)
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Journal Article
Host tropism determination by convergent evolution of immunological evasion in the Lyme disease system
Hart, Thomas M, Dupuis, 2nd, Alan P, Tufts, Danielle M, Blom, Anna M, Starkey, Simon R, Rego, Ryan O M, Ram, Sanjay, Kraiczy, Peter, Kramer, Laura D, Diuk-Wasser, Maria A, Kolokotronis, Sergios-Orestis, Lin, Yi-Pin
Published in PLoS pathogens (01.07.2021)
Published in PLoS pathogens (01.07.2021)
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Journal Article
Integrating multiple lines of evidence to better understand the evolutionary divergence of humpback dolphins along their entire distribution range: a new dolphin species in Australian waters?
Mendez, Martin, Jefferson, Thomas A., Kolokotronis, Sergios-Orestis, Krützen, Michael, Parra, Guido J., Collins, Tim, Minton, Giana, Baldwin, Robert, Berggren, Per, Särnblad, Anna, Amir, Omar A., Peddemors, Vic M., Karczmarski, Leszek, Guissamulo, Almeida, Smith, Brian, Sutaria, Dipani, Amato, George, Rosenbaum, Howard C.
Published in Molecular ecology (01.12.2013)
Published in Molecular ecology (01.12.2013)
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Journal Article
Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary
Krause, Johannes, Unger, Tina, Noçon, Aline, Malaspinas, Anna-Sapfo, Kolokotronis, Sergios-Orestis, Stiller, Mathias, Soibelzon, Leopoldo, Spriggs, Helen, Dear, Paul H, Briggs, Adrian W, Bray, Sarah C E, O'Brien, Stephen J, Rabeder, Gernot, Matheus, Paul, Cooper, Alan, Slatkin, Montgomery, Pääbo, Svante, Hofreiter, Michael
Published in BMC evolutionary biology (28.07.2008)
Published in BMC evolutionary biology (28.07.2008)
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Journal Article
Zoonotic viruses associated with illegally imported wildlife products
Smith, Kristine M, Anthony, Simon J, Switzer, William M, Epstein, Jonathan H, Seimon, Tracie, Jia, Hongwei, Sanchez, Maria D, Huynh, Thanh Thao, Galland, G Gale, Shapiro, Sheryl E, Sleeman, Jonathan M, McAloose, Denise, Stuchin, Margot, Amato, George, Kolokotronis, Sergios-Orestis, Lipkin, W Ian, Karesh, William B, Daszak, Peter, Marano, Nina
Published in PloS one (10.01.2012)
Published in PloS one (10.01.2012)
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Journal Article
Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease
Wyatt, Kelly B, Campos, Paula F, Gilbert, M Thomas P, Kolokotronis, Sergios-Orestis, Hynes, Wayne H, DeSalle, Rob, Ball, Stanley J, Daszak, Peter, MacPhee, Ross D E, Greenwood, Alex D
Published in PloS one (05.11.2008)
Published in PloS one (05.11.2008)
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Journal Article
A functional phylogenomic view of the seed plants
Lee, Ernest K, Cibrian-Jaramillo, Angelica, Kolokotronis, Sergios-Orestis, Katari, Manpreet S, Stamatakis, Alexandros, Ott, Michael, Chiu, Joanna C, Little, Damon P, Stevenson, Dennis Wm, McCombie, W Richard, Martienssen, Robert A, Coruzzi, Gloria, Desalle, Rob
Published in PLoS genetics (01.12.2011)
Published in PLoS genetics (01.12.2011)
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Journal Article
Testing the effectiveness of an international conservation agreement: marketplace forensics and CITES caviar trade regulation
Doukakis, Phaedra, Pikitch, Ellen K, Rothschild, Anna, DeSalle, Rob, Amato, George, Kolokotronis, Sergios-Orestis
Published in PloS one (25.07.2012)
Published in PloS one (25.07.2012)
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Journal Article
Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses
Escalera-Zamudio, Marina, Rojas-Anaya, Edith, Kolokotronis, Sergios-Orestis, Taboada, Blanca, Loza-Rubio, Elizabeth, Méndez-Ojeda, Maria L, Arias, Carlos F, Osterrieder, Nikolaus, Greenwood, Alex D
Published in mBio (08.11.2016)
Published in mBio (08.11.2016)
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Journal Article