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Automated evaluation of multiple sequence alignment methods to handle third generation sequencing errors
Rohmer, Coralie, Touzet, Hélène, Limasset, Antoine
Published in PeerJ (San Francisco, CA) (20.09.2024)
Published in PeerJ (San Francisco, CA) (20.09.2024)
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Journal Article
Improved mammalian family phylogeny using gap-rare multiple sequence alignment: A timetree of extant placentals and marsupials
Liu, Gao-Ming, Pan, Qi, Du, Juan, Zhu, Ping-Fen, Liu, Wei-Qiang, Li, Zi-Hao, Wang, Ling, Hu, Chun-Yan, Dai, Yi-Chen, Zhang, Xiao-Xiao, Zhang, Zhan, Yu, Yang, Li, Meng, Wang, Peng-Cheng, Wang, Xiao, Li, Ming, Zhou, Xu-Ming
Published in Dōngwùxué yánjiū (01.11.2023)
Published in Dōngwùxué yánjiū (01.11.2023)
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Journal Article
PA-Star: A disk-assisted parallel A-Star strategy with locality-sensitive hash for multiple sequence alignment
Sundfeld, Daniel, Razzolini, Caina, Teodoro, George, Boukerche, Azzedine, de Melo, Alba Cristina Magalhaes Alves
Published in Journal of parallel and distributed computing (01.02.2018)
Published in Journal of parallel and distributed computing (01.02.2018)
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Journal Article
BLAST: a more efficient report with usability improvements
Boratyn, Grzegorz M., Camacho, Christiam, Cooper, Peter S., Coulouris, George, Fong, Amelia, Ma, Ning, Madden, Thomas L., Matten, Wayne T., McGinnis, Scott D., Merezhuk, Yuri, Raytselis, Yan, Sayers, Eric W., Tao, Tao, Ye, Jian, Zaretskaya, Irena
Published in Nucleic acids research (01.07.2013)
Published in Nucleic acids research (01.07.2013)
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Journal Article
BLAST+: architecture and applications
Camacho, Christiam, Coulouris, George, Avagyan, Vahram, Ma, Ning, Papadopoulos, Jason, Bealer, Kevin, Madden, Thomas L
Published in BMC bioinformatics (15.12.2009)
Published in BMC bioinformatics (15.12.2009)
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Journal Article
Human B-cell isotype switching origins of IgE
Looney, Timothy J., Lee, Ji-Yeun, Roskin, Krishna M., Hoh, Ramona A., King, Jasmine, Glanville, Jacob, Liu, Yi, Pham, Tho D., Dekker, Cornelia L., Davis, Mark M., Boyd, Scott D.
Published in Journal of allergy and clinical immunology (01.02.2016)
Published in Journal of allergy and clinical immunology (01.02.2016)
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Journal Article
CrossMap: a versatile tool for coordinate conversion between genome assemblies
Zhao, Hao, Sun, Zhifu, Wang, Jing, Huang, Haojie, Kocher, Jean-Pierre, Wang, Liguo
Published in Bioinformatics (01.04.2014)
Published in Bioinformatics (01.04.2014)
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Journal Article
SPEG Interacts with Myotubularin, and Its Deficiency Causes Centronuclear Myopathy with Dilated Cardiomyopathy
Agrawal, Pankaj B., Pierson, Christopher R., Joshi, Mugdha, Liu, Xiaoli, Ravenscroft, Gianina, Moghadaszadeh, Behzad, Talabere, Tiffany, Viola, Marissa, Swanson, Lindsay C., Haliloğlu, Göknur, Talim, Beril, Yau, Kyle S., Allcock, Richard J.N., Laing, Nigel G., Perrella, Mark A., Beggs, Alan H.
Published in American journal of human genetics (07.08.2014)
Published in American journal of human genetics (07.08.2014)
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Journal Article
Application of Quaternion in improving the quality of global sequence alignment scores for an ambiguous sequence target in Streptococcus pneumoniae DNA
Lestari, D., Bustamam, A., Novianti, T., Ardaneswari, G.
Published in AIP conference proceedings (10.07.2017)
Published in AIP conference proceedings (10.07.2017)
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Journal Article
Conference Proceeding
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
Hafner, Markus, Landthaler, Markus, Burger, Lukas, Khorshid, Mohsen, Hausser, Jean, Berninger, Philipp, Rothballer, Andrea, Ascano, Manuel, Jungkamp, Anna-Carina, Munschauer, Mathias, Ulrich, Alexander, Wardle, Greg S., Dewell, Scott, Zavolan, Mihaela, Tuschl, Thomas
Published in Cell (02.04.2010)
Published in Cell (02.04.2010)
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Journal Article
Fine-grained GPU parallelization of pairwise local sequence alignment
Jain, Chirag, Kumar, Subodh
Published in 2014 21st International Conference on High Performance Computing (HiPC) (01.12.2014)
Published in 2014 21st International Conference on High Performance Computing (HiPC) (01.12.2014)
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Conference Proceeding
Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy
Wang, Fang, Wang, Ke, Cai, Lei, Zhao, Mingjun, Kirk, Paul M, Fan, Guomei, Sun, Qinglan, Li, Bo, Wang, Shuai, Yu, Zhengfei, Han, Dong, Ma, Juncai, Wu, Linhuan, Yao, Yijian
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Journal Article
Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins
Moreno-Gallego, J. Leonardo, Chou, Shao-Pei, Di Rienzi, Sara C., Goodrich, Julia K., Spector, Timothy D., Bell, Jordana T., Youngblut, Nicholas D., Hewson, Ian, Reyes, Alejandro, Ley, Ruth E.
Published in Cell host & microbe (13.02.2019)
Published in Cell host & microbe (13.02.2019)
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Journal Article
Detection of nonneutral substitution rates on mammalian phylogenies
Pollard, Katherine S., Hubisz, Melissa J., Rosenbloom, Kate R., Siepel, Adam
Published in Genome research (01.01.2010)
Published in Genome research (01.01.2010)
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Journal Article
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
Xie, Xiaohui, Lu, Jun, Kulbokas, E. J., Golub, Todd R., Mootha, Vamsi, Lindblad-Toh, Kerstin, Lander, Eric S., Kellis, Manolis
Published in Nature (London) (17.03.2005)
Published in Nature (London) (17.03.2005)
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Journal Article
SLC39A8 Deficiency: A Disorder of Manganese Transport and Glycosylation
Park, Julien H., Hogrebe, Max, Grüneberg, Marianne, DuChesne, Ingrid, von der Heiden, Ava L., Reunert, Janine, Schlingmann, Karl P., Boycott, Kym M., Beaulieu, Chandree L., Mhanni, Aziz A., Innes, A. Micheil, Hörtnagel, Konstanze, Biskup, Saskia, Gleixner, Eva M., Kurlemann, Gerhard, Fiedler, Barbara, Omran, Heymut, Rutsch, Frank, Wada, Yoshinao, Tsiakas, Konstantinos, Santer, René, Nebert, Daniel W., Rust, Stephan, Marquardt, Thorsten
Published in American journal of human genetics (03.12.2015)
Published in American journal of human genetics (03.12.2015)
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Journal Article
DNAJC13 mutations in Parkinson disease
Vilariño-Güell, Carles, Rajput, Alex, Milnerwood, Austen J., Shah, Brinda, Szu-Tu, Chelsea, Trinh, Joanne, Yu, Irene, Encarnacion, Mary, Munsie, Lise N., Tapia, Lucia, Gustavsson, Emil K., Chou, Patrick, Tatarnikov, Igor, Evans, Daniel M., Pishotta, Frederick T., Volta, Mattia, Beccano-Kelly, Dayne, Thompson, Christina, Lin, Michelle K., Sherman, Holly E., Han, Heather J., Guenther, Bruce L., Wasserman, Wyeth W., Bernard, Virginie, Ross, Colin J., Appel-Cresswell, Silke, Stoessl, A. Jon, Robinson, Christopher A., Dickson, Dennis W., Ross, Owen A., Wszolek, Zbigniew K., Aasly, Jan O., Wu, Ruey-Meei, Hentati, Faycal, Gibson, Rachel A., McPherson, Peter S., Girard, Martine, Rajput, Michele, Rajput, Ali H., Farrer, Matthew J.
Published in Human molecular genetics (01.04.2014)
Published in Human molecular genetics (01.04.2014)
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Journal Article