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Bulk tissue cell type deconvolution with multi-subject single-cell expression reference
Wang, Xuran, Park, Jihwan, Susztak, Katalin, Zhang, Nancy R., Li, Mingyao
Published in Nature communications (22.01.2019)
Published in Nature communications (22.01.2019)
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Single-cell transcriptome analysis of human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis
He, Helen, Suryawanshi, Hemant, Morozov, Pavel, Gay-Mimbrera, Jesús, Del Duca, Ester, Kim, Hyun Je, Kameyama, Naoya, Estrada, Yeriel, Der, Evan, Krueger, James G., Ruano, Juan, Tuschl, Thomas, Guttman-Yassky, Emma
Published in Journal of allergy and clinical immunology (01.06.2020)
Published in Journal of allergy and clinical immunology (01.06.2020)
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A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
Adamson, Britt, Norman, Thomas M., Jost, Marco, Cho, Min Y., Nuñez, James K., Chen, Yuwen, Villalta, Jacqueline E., Gilbert, Luke A., Horlbeck, Max A., Hein, Marco Y., Pak, Ryan A., Gray, Andrew N., Gross, Carol A., Dixit, Atray, Parnas, Oren, Regev, Aviv, Weissman, Jonathan S.
Published in Cell (15.12.2016)
Published in Cell (15.12.2016)
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Nucleotide resolution profiling of m3C RNA modification by HAC-seq
Cui, Jia, Liu, Qi, Sendinc, Erdem, Shi, Yang, Gregory, Richard I
Published in Nucleic acids research (18.03.2021)
Published in Nucleic acids research (18.03.2021)
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The clinical utility and diagnostic implementation of human subject cell transdifferentiation followed by RNA sequencing
Li, Shenglan, Zhao, Sen, Sinson, Jefferson C., Bajic, Aleksandar, Rosenfeld, Jill A., Neeley, Matthew B., Pena, Mezthly, Worley, Kim C., Burrage, Lindsay C., Weisz-Hubshman, Monika, Ketkar, Shamika, Craigen, William J., Clark, Gary D., Lalani, Seema, Bacino, Carlos A., Machol, Keren, Chao, Hsiao-Tuan, Potocki, Lorraine, Emrick, Lisa, Sheppard, Jennifer, Nguyen, My T.T., Khoramnia, Anahita, Hernandez, Paula Patricia, Nagamani, Sandesh CS, Liu, Zhandong, Eng, Christine M., Lee, Brendan, Liu, Pengfei
Published in American journal of human genetics (02.05.2024)
Published in American journal of human genetics (02.05.2024)
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The Genetic Landscape of Diamond-Blackfan Anemia
Ulirsch, Jacob C., Verboon, Jeffrey M., Kazerounian, Shideh, Guo, Michael H., Yuan, Daniel, Ludwig, Leif S., Handsaker, Robert E., Abdulhay, Nour J., Fiorini, Claudia, Genovese, Giulio, Lim, Elaine T., Cheng, Aaron, Cummings, Beryl B., Chao, Katherine R., Beggs, Alan H., Genetti, Casie A., Sieff, Colin A., Newburger, Peter E., Niewiadomska, Edyta, Matysiak, Michal, Vlachos, Adrianna, Lipton, Jeffrey M., Atsidaftos, Eva, Glader, Bertil, Narla, Anupama, Gleizes, Pierre-Emmanuel, O’Donohue, Marie-Françoise, Montel-Lehry, Nathalie, Amor, David J., McCarroll, Steven A., O’Donnell-Luria, Anne H., Gupta, Namrata, Gabriel, Stacey B., MacArthur, Daniel G., Lander, Eric S., Lek, Monkol, Da Costa, Lydie, Nathan, David G., Korostelev, Andrei A., Do, Ron, Sankaran, Vijay G., Gazda, Hanna T.
Published in American journal of human genetics (06.12.2018)
Published in American journal of human genetics (06.12.2018)
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Web-accessible application for identifying pathogenic transcripts with RNA-seq: Increased sensitivity in diagnosis of neurodevelopmental disorders
Dekker, Jordy, Schot, Rachel, Bongaerts, Michiel, de Valk, Walter G., van Veghel-Plandsoen, Monique M., Monfils, Kathryn, Douben, Hannie, Elfferich, Peter, Kasteleijn, Esmee, van Unen, Leontine M.A., Geeven, Geert, Saris, Jasper J., van Ierland, Yvette, Verheijen, Frans W., van der Sterre, Marianne L.T., Sadeghi Niaraki, Farah, Smits, Daphne J., Huidekoper, Hidde H., Williams, Monique, Wilke, Martina, Verhoeven, Virginie J.M., Joosten, Marieke, Kievit, Anneke J.A., van de Laar, Ingrid M.B.H., Hoefsloot, Lies H., Hoogeveen-Westerveld, Marianne, Nellist, Mark, Mancini, Grazia M.S., van Ham, Tjakko J.
Published in American journal of human genetics (02.02.2023)
Published in American journal of human genetics (02.02.2023)
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Gastric microbes associated with gastric inflammation, atrophy and intestinal metaplasia 1 year after Helicobacter pylori eradication
Sung, Joseph J Y, Coker, Olabisi Oluwabukola, Chu, Eagle, Szeto, Chun Ho, Luk, Simson Tsz Yat, Lau, Harry Cheuk Hay, Yu, Jun
Published in Gut (01.09.2020)
Published in Gut (01.09.2020)
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RNA sequencing by direct tagmentation of RNA/DNA hybrids
Di, Lin, Fu, Yusi, Sun, Yue, Li, Jie, Liu, Lu, Yao, Jiacheng, Wang, Guanbo, Wu, Yalei, Lao, Kaiqin, Lee, Raymond W., Zheng, Genhua, Xu, Jun, Oh, Juntaek, Wang, Dong, Xie, X. Sunney, Huang, Yanyi, Wang, Jianbin
Published in Proceedings of the National Academy of Sciences - PNAS (11.02.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (11.02.2020)
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IL-5Rα marks nasal polyp IgG4- and IgE-expressing cells in aspirin-exacerbated respiratory disease
Buchheit, Kathleen M., Dwyer, Daniel F., Ordovas-Montanes, Jose, Katz, Howard R., Lewis, Erin, Vukovic, Marko, Lai, Juying, Bankova, Lora G., Bhattacharyya, Neil, Shalek, Alex K., Barrett, Nora A., Boyce, Joshua A., Laidlaw, Tanya M.
Published in Journal of allergy and clinical immunology (01.06.2020)
Published in Journal of allergy and clinical immunology (01.06.2020)
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Dysregulated transcriptional responses to SARS-CoV-2 in the periphery
McClain, Micah T., Constantine, Florica J., Henao, Ricardo, Liu, Yiling, Tsalik, Ephraim L., Burke, Thomas W., Steinbrink, Julie M., Petzold, Elizabeth, Nicholson, Bradly P., Rolfe, Robert, Kraft, Bryan D., Kelly, Matthew S., Saban, Daniel R., Yu, Chen, Shen, Xiling, Ko, Emily M., Sempowski, Gregory D., Denny, Thomas N., Ginsburg, Geoffrey S., Woods, Christopher W.
Published in Nature communications (17.02.2021)
Published in Nature communications (17.02.2021)
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Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types
Cheung, Leonard Y M, George, Akima S, McGee, Stacey R, Daly, Alexandre Z, Brinkmeier, Michelle L, Ellsworth, Buffy S, Camper, Sally A
Published in Endocrinology (Philadelphia) (01.12.2018)
Published in Endocrinology (Philadelphia) (01.12.2018)
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Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli
Thomason, Maureen K., Bischler, Thorsten, Eisenbart, Sara K., Förstner, Konrad U., Zhang, Aixia, Herbig, Alexander, Nieselt, Kay, Sharma, Cynthia M., Storz, Gisela
Published in Journal of bacteriology (01.01.2015)
Published in Journal of bacteriology (01.01.2015)
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A pilot precision medicine trial for children with diffuse intrinsic pontine glioma—PNOC003: A report from the Pacific Pediatric Neuro‐Oncology Consortium
Mueller, Sabine, Jain, Payal, Liang, Winnie S., Kilburn, Lindsay, Kline, Cassie, Gupta, Nalin, Panditharatna, Eshini, Magge, Suresh N., Zhang, Bo, Zhu, Yuankun, Crawford, John R., Banerjee, Anu, Nazemi, Kellie, Packer, Roger J., Petritsch, Claudia K., Truffaux, Nathalene, Roos, Alison, Nasser, Sara, Phillips, Joanna J., Solomon, David, Molinaro, Annette, Waanders, Angela J., Byron, Sara A., Berens, Michael E., Kuhn, John, Nazarian, Javad, Prados, Michael, Resnick, Adam C.
Published in International journal of cancer (01.10.2019)
Published in International journal of cancer (01.10.2019)
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MicroRNA signatures of CD4+ T cell subsets in healthy and multiple sclerosis subjects determined by small RNA-sequencing
Culina, Slobodan, Commère, Pierre-Henri, Turc, Elodie, Jouy, Axel, Pellegrini, Sandra, Roux, Thomas, Hasan, Milena, Monot, Marc, Michel, Frédérique
Published in Journal of neuroimmunology (15.04.2025)
Published in Journal of neuroimmunology (15.04.2025)
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Simulating paired and longitudinal single-cell RNA sequencing data with rescueSim
Wynn, Elizabeth A, Mould, Kara J, Vestal, Brian E, Moore, Camille M
Published in Bioinformatics (Oxford, England) (14.08.2025)
Published in Bioinformatics (Oxford, England) (14.08.2025)
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