Genome and epigenome engineering CRISPR toolkit for in vivo modulation of cis -regulatory interactions and gene expression in the chicken embryo
Williams, Ruth M, Senanayake, Upeka, Artibani, Mara, Taylor, Gunes, Wells, Daniel, Ahmed, Ahmed Ashour, Sauka-Spengler, Tatjana
Published in Development (Cambridge) (15.02.2018)
Published in Development (Cambridge) (15.02.2018)
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Journal Article
From Pioneer to Repressor: Bimodal foxd3 Activity Dynamically Remodels Neural Crest Regulatory Landscape In Vivo
Lukoseviciute, Martyna, Gavriouchkina, Daria, Williams, Ruth M., Hochgreb-Hagele, Tatiana, Senanayake, Upeka, Chong-Morrison, Vanessa, Thongjuea, Supat, Repapi, Emmanouela, Mead, Adam, Sauka-Spengler, Tatjana
Published in Developmental cell (03.12.2018)
Published in Developmental cell (03.12.2018)
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Biotagging of Specific Cell Populations in Zebrafish Reveals Gene Regulatory Logic Encoded in the Nuclear Transcriptome
Trinh, Le A., Chong-Morrison, Vanessa, Gavriouchkina, Daria, Hochgreb-Hägele, Tatiana, Senanayake, Upeka, Fraser, Scott E., Sauka-Spengler, Tatjana
Published in Cell reports (Cambridge) (11.04.2017)
Published in Cell reports (Cambridge) (11.04.2017)
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Journal Article
Tissue-Specific In Vivo Biotin Chromatin Immunoprecipitation with Sequencing in Zebrafish and Chicken
Lukoseviciute, Martyna, Ling, Irving T.C., Senanayake, Upeka, Candido-Ferreira, Ivan, Taylor, Gunes, Williams, Ruth M., Sauka-Spengler, Tatjana
Published in STAR protocols (18.09.2020)
Published in STAR protocols (18.09.2020)
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Journal Article
Reconstruction of the Global Neural Crest Gene Regulatory Network In Vivo
Williams, Ruth M., Candido-Ferreira, Ivan, Repapi, Emmanouela, Gavriouchkina, Daria, Senanayake, Upeka, Ling, Irving T.C., Telenius, Jelena, Taylor, Stephen, Hughes, Jim, Sauka-Spengler, Tatjana
Published in Developmental cell (21.10.2019)
Published in Developmental cell (21.10.2019)
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Journal Article
Active DNA demethylation at enhancers during the vertebrate phylotypic period
Bogdanović, Ozren, Smits, Arne H, de la Calle Mustienes, Elisa, Tena, Juan J, Ford, Ethan, Williams, Ruth, Senanayake, Upeka, Schultz, Matthew D, Hontelez, Saartje, van Kruijsbergen, Ila, Rayon, Teresa, Gnerlich, Felix, Carell, Thomas, Veenstra, Gert Jan C, Manzanares, Miguel, Sauka-Spengler, Tatjana, Ecker, Joseph R, Vermeulen, Michiel, Gómez-Skarmeta, José Luis, Lister, Ryan
Published in Nature genetics (01.04.2016)
Published in Nature genetics (01.04.2016)
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Journal Article
1261 Standardising care for children admitted with Acute Wheeze: implementation of a new discharge bundle in a major Urban Hospital
White, Laura, Nanthakumaran, Madura, Senanayake, Upeka, Kumar, Meera, Hughes, Dominic, Latham, Sarah, Tomlin, Becky, Osinibi, Mira
Published in Archives of disease in childhood (17.08.2022)
Published in Archives of disease in childhood (17.08.2022)
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miR-192, miR-194, miR-215, miR-200c and miR-141 are downregulated and their common target ACVR2B is strongly expressed in renal childhood neoplasms
SENANAYAKE, Upeka, DAS, Suman, VESELY, Paul, ALZOUGHBI, Wael, FRÖHLICH, Leopold F, CHOWDHURY, Pooja, LEUSCHNER, Ivo, HOEFLER, Gerald, GUERTL, Barbara
Published in Carcinogenesis (New York) (01.05.2012)
Published in Carcinogenesis (New York) (01.05.2012)
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The pluripotent renal stem cell regulator SIX2 is activated in renal neoplasms and influences cellular proliferation and migration
Senanayake, Upeka, Koller, Karin, Pichler, Martin, Leuschner, Ivo, Strohmaier, Heimo, Hadler, Ulrike, Das, Suman, Hoefler, Gerald, Guertl, Barbara
Published in Human pathology (01.03.2013)
Published in Human pathology (01.03.2013)
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Lim1, an Embryonal Transcription Factor, Is Absent in Multicystic Renal Dysplasia, but Reactivated in Nephroblastomas
Guertl, Barbara, Senanayake, Upeka, Nusshold, Elisa, Leuschner, Ivo, Mannweiler, Sebastian, Ebner, Birgit, Hoefler, Gerald
Published in Pathobiology (Basel) (01.07.2011)
Published in Pathobiology (Basel) (01.07.2011)
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Journal Article
Reconstruction of the global neural crest gene regulatory network in vivo
Williams, Ruth M, Candido-Ferreira, Ivan, Repapi, Emmanouela, Gavriouchkina, Daria, Senanayake, Upeka, Telenius, Jelena, Taylor, Stephen, Hughes, Jim, Sauka-Spengler, Tatjana
Published in bioRxiv (30.12.2018)
Published in bioRxiv (30.12.2018)
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From pioneer to repressor: Bimodal foxd3 activity dynamically remodels neural crest regulatory landscape in vivo
Gavriouchkina, Daria, Williams, Ruth M, Lukoseviciute, Martyna, Hochgreb-Hagele, Tatiana, Senanayake, Upeka, Chong-Morrison, Vanessa, Thongjuea, Supat, Repapi, Emmanouela, Mead, Adam, Sauka-Spengler, Tatjana
Published in bioRxiv (22.11.2017)
Published in bioRxiv (22.11.2017)
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